Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.51917 * 2 1 4 4 C 1.50961 * 109.56825 * 120.14752 * 2 1 3 5 5 S 1.82608 * 111.06091 * 214.62915 * 4 2 1 6 6 C 1.82254 * 104.17678 * 319.44910 * 5 4 2 7 7 C 1.51080 * 110.48140 * 319.75341 * 6 5 4 8 8 N 1.47399 * 107.92808 * 96.73648 * 7 6 5 9 9 C 1.46903 * 110.99587 * 143.76646 * 8 7 6 10 10 C 1.50699 * 109.46977 * 299.64922 * 9 8 7 11 11 C 1.38635 * 119.75470 * 90.00207 * 10 9 8 12 12 C 1.37611 * 120.25212 * 180.02562 * 11 10 9 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.38907 * 115.32197 * 271.08203 * 8 7 6 25 25 H 1.08997 * 109.46843 * 180.12883 * 1 2 3 26 26 H 1.08999 * 109.47306 * 300.12912 * 1 2 3 27 27 H 1.09003 * 109.46443 * 60.12518 * 1 2 3 28 28 H 1.08998 * 109.16287 * 335.03977 * 4 2 1 29 29 H 1.09001 * 109.15709 * 94.27612 * 4 2 1 30 30 H 1.08998 * 109.30541 * 80.06534 * 6 5 4 31 31 H 1.09000 * 109.30019 * 199.44654 * 6 5 4 32 32 H 1.09006 * 109.76435 * 337.13540 * 7 6 5 33 33 H 1.08998 * 109.77240 * 216.34833 * 7 6 5 34 34 H 1.08993 * 109.47077 * 179.64722 * 9 8 7 35 35 H 1.09004 * 109.47115 * 59.64688 * 9 8 7 36 36 H 1.07996 * 119.87152 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 39 39 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 40 40 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 41 41 H 1.09000 * 108.77817 * 187.04454 * 24 8 7 42 42 H 1.08998 * 108.78140 * 305.36190 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0357 -0.7144 1.2300 5 16 3.5767 0.0483 1.8449 6 6 4.5229 0.4240 0.3332 7 6 4.3910 -0.7012 -0.6663 8 7 3.3268 -0.3388 -1.6196 9 6 3.6526 -0.8045 -2.9742 10 6 4.9384 -0.1641 -3.4298 11 6 6.1481 -0.7905 -3.1722 12 6 7.3284 -0.2145 -3.5832 13 6 7.3042 1.0147 -4.2677 14 6 8.5105 1.6156 -4.6952 15 1 9.4356 1.3923 -4.1847 16 6 8.5059 2.5000 -5.7798 17 7 7.5746 2.4087 -6.6942 18 14 9.8292 3.8106 -5.9222 19 1 9.6014 4.6128 -7.1510 20 1 11.1629 3.1617 -5.9943 21 1 9.7749 4.6998 -4.7341 22 6 6.0709 1.6440 -4.5191 23 6 4.9026 1.0469 -4.1039 24 6 2.0443 -0.7281 -1.2545 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5158 0.8888 27 1 -0.3632 0.5119 -0.8912 28 1 1.2760 -0.6650 2.0101 29 1 2.2278 -1.7586 0.9836 30 1 4.1442 1.3453 -0.1093 31 1 5.5740 0.5566 0.5898 32 1 4.1250 -1.6236 -0.1499 33 1 5.3330 -0.8342 -1.1983 34 1 2.8481 -0.5296 -3.6562 35 1 3.7689 -1.8883 -2.9677 36 1 6.1642 -1.7336 -2.6464 37 1 8.2696 -0.7040 -3.3811 38 1 6.9368 1.6784 -6.6657 39 1 6.0411 2.5897 -5.0397 40 1 3.9546 1.5258 -4.2995 41 1 1.3661 -0.5222 -2.0825 42 1 2.0450 -1.8006 -1.0603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335694214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = 11.576284 kcal Electronic energy + Delta-G solvation = -21175.261475 eV Core-core repulsion = 18245.360371 eV Total energy + Delta-G solvation = -2929.901104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.38799 -37.60681 -35.05073 -33.72663 -31.55194 -30.06796 -29.47127 -27.43442 -26.87538 -24.88323 -23.58527 -21.59998 -20.95378 -20.46588 -19.86539 -17.95927 -16.71986 -15.92329 -15.40558 -15.28548 -14.71808 -14.58203 -14.17992 -13.98068 -13.73071 -13.37666 -13.25561 -12.94135 -12.41730 -12.31902 -12.20840 -12.04785 -11.86251 -11.54908 -11.46526 -11.32419 -11.05940 -11.02690 -10.70553 -10.60053 -10.41165 -10.34882 -9.71303 -9.56069 -9.49673 -9.00000 -8.01412 -7.71531 -7.63979 -7.52957 -7.20468 -4.46913 1.78912 2.56450 2.67797 2.83468 3.14166 3.22439 3.34685 3.99965 4.09595 4.54520 4.57627 4.63296 4.95786 5.19605 5.25679 5.33744 5.37648 5.44208 5.47014 5.48037 5.55527 5.62508 5.76037 5.78528 5.86866 5.95600 6.01927 6.13067 6.15905 6.19946 6.20486 6.26519 6.74568 6.97240 7.10529 7.28056 7.36112 7.56093 7.70559 7.76612 7.79069 7.93463 8.17109 8.28309 8.72622 8.85940 10.02211 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.003652 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.871825 B = 7665.877851 C = 8010.441285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.067 4.067 5 S -0.302 6.302 6 C -0.061 4.061 7 C 0.055 3.945 8 N -0.556 5.556 9 C 0.130 3.870 10 C -0.223 4.223 11 C -0.076 4.076 12 C -0.229 4.229 13 C 0.101 3.899 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.040 3.960 17 N -0.795 5.795 18 Si 1.064 2.936 19 H -0.274 1.274 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.222 4.222 23 C -0.057 4.057 24 C 0.081 3.919 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.299 0.701 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -4.563 9.618 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.215 4.215 5 S -0.075 6.075 6 C -0.210 4.210 7 C -0.073 4.073 8 N -0.279 5.279 9 C 0.005 3.995 10 C -0.225 4.225 11 C -0.094 4.094 12 C -0.248 4.248 13 C 0.098 3.902 14 C -0.551 4.551 15 H 0.093 0.907 16 C -0.182 4.182 17 N -0.418 5.418 18 Si 0.887 3.113 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.200 1.200 22 C -0.241 4.241 23 C -0.076 4.076 24 C -0.049 4.049 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -9.230 -2.641 9.710 13.655 hybrid contribution -0.856 -2.411 -0.170 2.564 sum -10.086 -5.052 9.540 14.774 Atomic orbital electron populations 1.21808 0.93969 1.01769 1.02177 1.21370 0.96196 1.01107 0.93160 0.89152 1.23334 0.96061 1.01392 1.00738 1.86820 1.21102 1.81182 1.18411 1.23362 1.01342 1.02874 0.93409 1.22197 0.97387 0.94585 0.93082 1.58220 1.01196 1.65056 1.03475 1.20673 0.96385 0.95404 0.87079 1.18780 0.92347 0.99793 1.11541 1.20378 0.92854 0.97483 0.98722 1.20890 0.95866 0.97589 1.10494 1.17665 0.92867 0.89857 0.89825 1.20589 0.95490 1.24133 1.14864 0.90727 1.27005 1.00284 0.99212 0.91729 1.70457 1.12447 1.29683 1.29230 0.83657 0.74584 0.75554 0.77479 1.19845 1.20148 1.19958 1.21141 0.92428 1.00892 1.09626 1.20403 0.96497 0.94157 0.96571 1.20733 0.91075 0.95803 0.97301 0.92696 0.92327 0.92091 0.88422 0.90476 0.88317 0.88134 0.94014 0.87610 0.91571 0.95753 0.89646 0.89048 0.88716 0.87823 0.89336 0.90927 0.96967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.83 37.16 0.33 -0.87 16 2 C -0.10 -1.09 2.40 -91.18 -0.22 -1.31 16 3 H 0.09 1.18 7.18 -51.93 -0.37 0.81 16 4 C -0.07 -0.75 5.32 36.13 0.19 -0.55 16 5 S -0.30 -4.07 22.04 -107.50 -2.37 -6.44 16 6 C -0.06 -0.89 5.85 36.19 0.21 -0.68 16 7 C 0.06 0.83 5.13 -4.52 -0.02 0.80 16 8 N -0.56 -8.30 3.84 -242.49 -0.93 -9.24 16 9 C 0.13 2.13 5.12 -4.97 -0.03 2.11 16 10 C -0.22 -4.49 4.91 -104.33 -0.51 -5.00 16 11 C -0.08 -1.58 7.73 -39.66 -0.31 -1.88 16 12 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 13 C 0.10 2.60 5.30 -106.82 -0.57 2.04 16 14 C -0.52 -13.71 8.98 -37.74 -0.34 -14.05 16 15 H 0.07 1.91 7.96 -52.49 -0.42 1.49 16 16 C 0.04 1.00 4.93 -17.34 -0.09 0.91 16 17 N -0.80 -20.88 12.32 55.55 0.68 -20.20 16 18 Si 1.06 21.36 30.00 -169.99 -5.10 16.26 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 22 C -0.22 -5.51 7.96 -38.87 -0.31 -5.82 16 23 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 24 C 0.08 1.01 4.32 -7.45 -0.03 0.98 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 27 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.10 0.95 7.70 -51.93 -0.40 0.55 16 29 H 0.08 0.86 6.81 -51.93 -0.35 0.50 16 30 H 0.10 1.56 7.56 -51.93 -0.39 1.17 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.04 0.60 6.65 -51.93 -0.35 0.25 16 33 H 0.11 1.76 4.28 -51.93 -0.22 1.54 16 34 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 35 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.09 1.58 7.40 -52.49 -0.39 1.19 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.30 8.05 6.70 -40.82 -0.27 7.78 16 39 H 0.10 2.70 6.50 -52.49 -0.34 2.36 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.07 0.87 7.39 -51.93 -0.38 0.49 16 42 H 0.01 0.15 7.27 -51.93 -0.38 -0.22 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -25.93 333.56 -11.56 -37.49 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.42 Total: 7.87 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.45 Total: -30.78 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: -0.25 Total: -29.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.10 Total: 16.26 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.37 Total: -6.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.93 -11.56 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335694214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.063 kcal (2) G-P(sol) polarization free energy of solvation -25.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds