Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.51917 * 2 1 4 4 C 1.50961 * 109.56825 * 120.14752 * 2 1 3 5 5 S 1.82608 * 111.06091 * 214.62915 * 4 2 1 6 6 C 1.82254 * 104.17678 * 319.44910 * 5 4 2 7 7 C 1.51080 * 110.48140 * 319.75341 * 6 5 4 8 8 N 1.47399 * 107.92808 * 96.73648 * 7 6 5 9 9 C 1.46903 * 110.99587 * 143.76646 * 8 7 6 10 10 C 1.50699 * 109.46977 * 299.64922 * 9 8 7 11 11 C 1.38635 * 119.75470 * 90.00207 * 10 9 8 12 12 C 1.37611 * 120.25212 * 180.02562 * 11 10 9 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.38907 * 115.32197 * 271.08203 * 8 7 6 25 25 H 1.08997 * 109.46843 * 180.12883 * 1 2 3 26 26 H 1.08999 * 109.47306 * 300.12912 * 1 2 3 27 27 H 1.09003 * 109.46443 * 60.12518 * 1 2 3 28 28 H 1.08998 * 109.16287 * 335.03977 * 4 2 1 29 29 H 1.09001 * 109.15709 * 94.27612 * 4 2 1 30 30 H 1.08998 * 109.30541 * 80.06534 * 6 5 4 31 31 H 1.09000 * 109.30019 * 199.44654 * 6 5 4 32 32 H 1.09006 * 109.76435 * 337.13540 * 7 6 5 33 33 H 1.08998 * 109.77240 * 216.34833 * 7 6 5 34 34 H 1.08993 * 109.47077 * 179.64722 * 9 8 7 35 35 H 1.09004 * 109.47115 * 59.64688 * 9 8 7 36 36 H 1.07996 * 119.87152 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 39 39 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 40 40 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 41 41 H 1.09000 * 108.77817 * 187.04454 * 24 8 7 42 42 H 1.08998 * 108.78140 * 305.36190 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0357 -0.7144 1.2300 5 16 3.5767 0.0483 1.8449 6 6 4.5229 0.4240 0.3332 7 6 4.3910 -0.7012 -0.6663 8 7 3.3268 -0.3388 -1.6196 9 6 3.6526 -0.8045 -2.9742 10 6 4.9384 -0.1641 -3.4298 11 6 6.1481 -0.7905 -3.1722 12 6 7.3284 -0.2145 -3.5832 13 6 7.3042 1.0147 -4.2677 14 6 8.5105 1.6156 -4.6952 15 1 9.4356 1.3923 -4.1847 16 6 8.5059 2.5000 -5.7798 17 7 7.5746 2.4087 -6.6942 18 14 9.8292 3.8106 -5.9222 19 1 9.6014 4.6128 -7.1510 20 1 11.1629 3.1617 -5.9943 21 1 9.7749 4.6998 -4.7341 22 6 6.0709 1.6440 -4.5191 23 6 4.9026 1.0469 -4.1039 24 6 2.0443 -0.7281 -1.2545 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5158 0.8888 27 1 -0.3632 0.5119 -0.8912 28 1 1.2760 -0.6650 2.0101 29 1 2.2278 -1.7586 0.9836 30 1 4.1442 1.3453 -0.1093 31 1 5.5740 0.5566 0.5898 32 1 4.1250 -1.6236 -0.1499 33 1 5.3330 -0.8342 -1.1983 34 1 2.8481 -0.5296 -3.6562 35 1 3.7689 -1.8883 -2.9677 36 1 6.1642 -1.7336 -2.6464 37 1 8.2696 -0.7040 -3.3811 38 1 6.9368 1.6784 -6.6657 39 1 6.0411 2.5897 -5.0397 40 1 3.9546 1.5258 -4.2995 41 1 1.3661 -0.5222 -2.0825 42 1 2.0450 -1.8006 -1.0603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335694214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = 0.135826 kcal Electronic energy + Delta-G solvation = -21175.757571 eV Core-core repulsion = 18245.360371 eV Total energy + Delta-G solvation = -2930.397200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66755 -39.23786 -36.37131 -35.26088 -32.87193 -31.65716 -31.27630 -28.43183 -28.22092 -26.19969 -25.09283 -23.16827 -22.54362 -21.56482 -21.29373 -19.84038 -17.78966 -17.04577 -16.75143 -16.53612 -16.36557 -16.05006 -15.64461 -15.38293 -15.24397 -14.48035 -14.25104 -14.14678 -14.06142 -13.78219 -13.70031 -13.36078 -13.10797 -12.89966 -12.70583 -12.55627 -12.51049 -12.28567 -11.99003 -11.96001 -11.73245 -11.62227 -11.44764 -11.26605 -10.85144 -10.66963 -9.56962 -9.41607 -9.14189 -9.13095 -8.71505 -6.44025 0.75649 0.87887 0.96895 1.49760 1.55085 1.62546 1.78843 2.32904 2.60925 3.01212 3.57520 3.67189 3.73284 4.02905 4.04873 4.15669 4.22809 4.26537 4.30066 4.43093 4.49907 4.51416 4.56214 4.67640 4.73603 4.75053 4.76927 4.88326 4.89245 4.98756 5.08187 5.14698 5.25183 5.26950 5.35095 5.45274 5.75850 5.80930 5.85335 6.02677 6.16282 6.28186 6.42782 6.55862 6.81860 6.96058 8.05169 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.003652 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.871825 B = 7665.877851 C = 8010.441285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.059 4.059 5 S -0.319 6.319 6 C -0.057 4.057 7 C 0.061 3.939 8 N -0.563 5.563 9 C 0.134 3.866 10 C -0.200 4.200 11 C -0.071 4.071 12 C -0.244 4.244 13 C 0.072 3.928 14 C -0.564 4.564 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.819 5.819 18 Si 1.114 2.886 19 H -0.271 1.271 20 H -0.258 1.258 21 H -0.266 1.266 22 C -0.239 4.239 23 C -0.064 4.064 24 C 0.077 3.923 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.283 0.717 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 -5.747 10.958 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.207 4.207 5 S -0.093 6.093 6 C -0.205 4.205 7 C -0.067 4.067 8 N -0.286 5.286 9 C 0.008 3.992 10 C -0.201 4.201 11 C -0.089 4.089 12 C -0.263 4.263 13 C 0.070 3.930 14 C -0.593 4.593 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.442 5.442 18 Si 0.931 3.069 19 H -0.195 1.195 20 H -0.182 1.182 21 H -0.191 1.191 22 C -0.258 4.258 23 C -0.082 4.082 24 C -0.052 4.052 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.178 -3.848 11.068 16.195 hybrid contribution -0.454 -2.198 -0.431 2.285 sum -11.633 -6.046 10.637 16.882 Atomic orbital electron populations 1.21772 0.91770 1.02871 1.02752 1.21286 0.97858 0.99569 0.92456 0.91288 1.23426 0.94750 1.01209 1.01268 1.86897 1.22794 1.81594 1.17991 1.23205 1.01319 1.02070 0.93937 1.22116 0.96552 0.95074 0.92933 1.58113 1.02319 1.65531 1.02682 1.20626 0.94477 0.95851 0.88226 1.19237 0.94113 0.98300 1.08465 1.20684 0.92046 0.98374 0.97809 1.21086 0.97242 0.97264 1.10753 1.17964 0.93238 0.90965 0.90872 1.20766 0.95620 1.26634 1.16265 0.91376 1.28351 1.01455 1.00522 0.90744 1.70571 1.13595 1.29800 1.30283 0.83047 0.72808 0.73339 0.77694 1.19508 1.18231 1.19058 1.21085 0.93447 1.00670 1.10611 1.20656 0.96243 0.94943 0.96405 1.20844 0.89624 0.96498 0.98275 0.91290 0.91472 0.91922 0.86521 0.89852 0.89999 0.88680 0.92899 0.89423 0.90252 0.94246 0.86565 0.88918 0.90482 0.89957 0.87586 0.90032 0.95937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.83 71.98 0.64 -1.18 16 2 C -0.09 -1.75 2.40 -11.15 -0.03 -1.77 16 3 H 0.07 1.66 7.18 -2.39 -0.02 1.65 16 4 C -0.06 -1.11 5.32 71.32 0.38 -0.74 16 5 S -0.32 -8.05 22.04 -56.49 -1.25 -9.29 16 6 C -0.06 -1.60 5.85 71.36 0.42 -1.18 16 7 C 0.06 1.69 5.13 85.58 0.44 2.13 16 8 N -0.56 -15.27 3.84 -921.12 -3.54 -18.80 16 9 C 0.13 3.97 5.12 85.56 0.44 4.41 16 10 C -0.20 -7.71 4.91 -19.67 -0.10 -7.81 16 11 C -0.07 -2.86 7.73 22.22 0.17 -2.69 16 12 C -0.24 -11.69 9.80 22.73 0.22 -11.47 16 13 C 0.07 3.87 5.30 -21.29 -0.11 3.75 16 14 C -0.56 -30.99 8.98 23.46 0.21 -30.77 16 15 H 0.07 3.67 7.96 -2.91 -0.02 3.64 16 16 C 0.01 0.27 4.93 85.26 0.42 0.69 16 17 N -0.82 -44.93 12.32 21.83 0.27 -44.66 16 18 Si 1.11 43.99 30.00 68.60 2.06 46.05 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 21 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 22 C -0.24 -12.30 7.96 22.73 0.18 -12.12 16 23 C -0.06 -2.80 9.67 22.22 0.21 -2.58 16 24 C 0.08 1.65 4.32 88.03 0.38 2.03 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 27 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 28 H 0.12 1.81 7.70 -2.39 -0.02 1.79 16 29 H 0.08 1.52 6.81 -2.39 -0.02 1.51 16 30 H 0.08 2.56 7.56 -2.39 -0.02 2.55 16 31 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.05 1.35 6.65 -2.38 -0.02 1.34 16 33 H 0.09 2.75 4.28 -2.39 -0.01 2.74 16 34 H 0.08 2.20 7.70 -2.39 -0.02 2.18 16 35 H 0.04 1.09 8.08 -2.38 -0.02 1.07 16 36 H 0.12 3.99 7.40 -2.91 -0.02 3.97 16 37 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.28 16.10 6.70 -92.71 -0.62 15.48 16 39 H 0.08 4.53 6.50 -2.91 -0.02 4.51 16 40 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.08 1.63 7.39 -2.39 -0.02 1.62 16 42 H 0.02 0.46 7.27 -2.39 -0.02 0.44 16 Total: -1.00 -58.18 333.56 2.56 -55.62 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 1.14 Total: 30.39 kcal Atomic # 6 Polarization: -63.17 SS G_CDS: 3.88 Total: -59.30 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -3.27 Total: -63.46 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.06 Total: 46.05 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.25 Total: -9.29 kcal Total: -58.18 2.56 -55.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335694214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.756 kcal (2) G-P(sol) polarization free energy of solvation -58.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds