Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.22830 * 2 1 4 4 C 1.52401 * 110.26765 * 238.01498 * 2 1 3 5 5 S 1.74768 * 114.52428 * 150.54358 * 4 2 1 6 6 C 1.85016 * 101.65694 * 61.31864 * 5 4 2 7 7 C 1.50346 * 108.77037 * 292.80399 * 6 5 4 8 8 N 1.48958 * 116.92317 * 90.73707 * 7 6 5 9 9 C 1.46898 * 111.00230 * 83.95391 * 8 7 6 10 10 C 1.50705 * 109.47194 * 66.04701 * 9 8 7 11 11 C 1.38634 * 119.74811 * 269.73102 * 10 9 8 12 12 C 1.37619 * 120.24747 * 179.72283 * 11 10 9 13 13 C 1.40705 * 119.74517 * 0.51906 * 12 11 10 14 14 C 1.41398 * 120.24449 * 179.72832 * 13 12 11 15 15 H 1.08005 * 119.99917 * 155.31048 * 14 13 12 16 16 C 1.39940 * 119.99835 * 335.31341 * 14 13 12 17 17 N 1.30825 * 120.00461 * 342.23096 * 16 14 13 18 18 Si 1.86803 * 119.99945 * 162.23333 * 16 14 13 19 19 H 1.48496 * 109.47465 * 94.66100 * 18 16 14 20 20 H 1.48504 * 109.46998 * 214.66113 * 18 16 14 21 21 H 1.48501 * 109.47017 * 334.66182 * 18 16 14 22 22 C 1.40715 * 119.51274 * 359.74976 * 13 12 11 23 23 C 1.37611 * 119.74658 * 0.02562 * 22 13 12 24 24 C 1.47463 * 118.68116 * 313.59803 * 8 7 6 25 25 H 1.09004 * 109.47317 * 181.97992 * 1 2 3 26 26 H 1.09006 * 109.47497 * 61.98647 * 1 2 3 27 27 H 1.08998 * 109.47480 * 301.98329 * 1 2 3 28 28 H 1.09005 * 108.47652 * 271.84858 * 4 2 1 29 29 H 1.09002 * 108.47941 * 29.23907 * 4 2 1 30 30 H 1.09003 * 109.58824 * 52.59236 * 6 5 4 31 31 H 1.09000 * 109.58574 * 172.87391 * 6 5 4 32 32 H 1.09006 * 107.95537 * 212.60863 * 7 6 5 33 33 H 1.08994 * 107.96184 * 328.85336 * 7 6 5 34 34 H 1.09006 * 109.47073 * 186.04170 * 9 8 7 35 35 H 1.08995 * 109.47359 * 306.04467 * 9 8 7 36 36 H 1.08003 * 119.87710 * 359.97136 * 11 10 9 37 37 H 1.08004 * 120.12583 * 180.27709 * 12 11 10 38 38 H 0.96996 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.12876 * 180.02562 * 22 13 12 40 40 H 1.07995 * 119.87975 * 179.97438 * 23 22 13 41 41 H 1.09001 * 109.22435 * 197.30830 * 24 8 7 42 42 H 1.08992 * 109.22897 * 77.94126 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9069 1.0227 0.0000 4 6 2.0579 -0.7573 -1.2126 5 16 3.6080 -0.2005 -1.7972 6 6 4.6936 -0.5106 -0.3315 7 6 4.2816 0.4141 0.7800 8 7 3.2517 -0.0906 1.7305 9 6 3.8648 -0.9079 2.7859 10 6 4.7493 -0.0398 3.6435 11 6 6.0869 0.1167 3.3143 12 6 6.9025 0.9115 4.0869 13 6 6.3766 1.5576 5.2209 14 6 7.2065 2.3721 6.0254 15 1 6.7732 3.1596 6.6243 16 6 8.5893 2.1578 6.0457 17 7 9.0819 1.0237 5.6184 18 14 9.7318 3.4913 6.6829 19 1 10.0234 3.2489 8.1186 20 1 10.9994 3.4682 5.9095 21 1 9.0809 4.8169 6.5270 22 6 5.0188 1.3870 5.5486 23 6 4.2207 0.5913 4.7590 24 6 2.0477 -0.7459 1.1870 25 1 -0.3634 -1.0271 0.0355 26 1 -0.3634 0.4827 -0.9073 27 1 -0.3634 0.5443 0.8716 28 1 2.1463 -1.8115 -0.9499 29 1 1.3314 -0.6662 -2.0200 30 1 4.5821 -1.5451 -0.0065 31 1 5.7330 -0.3221 -0.6003 32 1 5.1730 0.6678 1.3539 33 1 3.9031 1.3321 0.3306 34 1 3.0829 -1.3511 3.4027 35 1 4.4619 -1.6989 2.3323 36 1 6.4894 -0.3837 2.4460 37 1 7.9432 1.0357 3.8261 38 1 10.0403 0.8751 5.6328 39 1 4.6047 1.8786 6.4165 40 1 3.1784 0.4585 5.0087 41 1 1.2766 -0.7753 1.9568 42 1 2.2966 -1.7647 0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335694215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 16.794691 kcal Electronic energy + Delta-G solvation = -21055.617344 eV Core-core repulsion = 18125.942527 eV Total energy + Delta-G solvation = -2929.674817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -38.83160 -37.37115 -34.91752 -33.51118 -31.28324 -29.96263 -29.19625 -27.74053 -26.95549 -25.05323 -23.84201 -21.70585 -20.93751 -19.81625 -19.49452 -17.29897 -17.01149 -16.00221 -15.41900 -15.25094 -14.72539 -14.56780 -14.05985 -13.69125 -13.61078 -13.39697 -13.06121 -12.97229 -12.61063 -12.43059 -12.08030 -11.90541 -11.67373 -11.59792 -11.30881 -11.20620 -11.11214 -10.92686 -10.77953 -10.60526 -10.48963 -10.32132 -9.74566 -9.56768 -9.38418 -9.12108 -7.96625 -7.61675 -7.41498 -7.28790 -6.76775 -4.34622 1.76256 2.46958 2.72619 3.06131 3.07800 3.10585 3.17397 3.92851 4.04354 4.52657 4.59318 4.67185 4.87130 5.10059 5.25314 5.27539 5.33913 5.44959 5.51432 5.56143 5.64420 5.72133 5.79621 5.83211 5.93036 5.99265 6.11906 6.17296 6.26244 6.35903 6.40522 6.42845 6.93999 7.07583 7.25352 7.37353 7.41100 7.53136 7.61894 7.88823 8.05607 8.13602 8.30688 8.63931 8.90047 8.97970 10.17876 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027357 B = 0.003548 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.254351 B = 7890.981538 C = 8437.497976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.114 4.114 5 S -0.251 6.251 6 C -0.093 4.093 7 C 0.054 3.946 8 N -0.556 5.556 9 C 0.126 3.874 10 C -0.206 4.206 11 C -0.096 4.096 12 C -0.165 4.165 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.227 4.227 23 C -0.069 4.069 24 C 0.071 3.929 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -3.703 -10.361 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.262 4.262 5 S -0.023 6.023 6 C -0.242 4.242 7 C -0.074 4.074 8 N -0.281 5.281 9 C 0.000 4.000 10 C -0.208 4.208 11 C -0.115 4.115 12 C -0.184 4.184 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.247 4.247 23 C -0.088 4.088 24 C -0.056 4.056 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.539 -3.075 -11.245 15.063 hybrid contribution 0.531 -0.855 1.081 1.477 sum -9.007 -3.930 -10.164 14.138 Atomic orbital electron populations 1.21798 0.93870 1.01730 1.02186 1.20833 0.96261 1.01114 0.93161 0.88330 1.22852 0.98380 1.02564 1.02453 1.86265 1.04961 1.85693 1.25351 1.24053 1.01048 1.03657 0.95449 1.22203 0.96632 0.96646 0.91941 1.60849 1.07567 1.45422 1.14281 1.20632 0.95614 0.92552 0.91166 1.18848 0.93623 1.08343 0.99961 1.20481 0.93247 0.99492 0.98287 1.21267 0.99525 1.01767 0.95853 1.17607 0.91147 0.89748 0.90486 1.19600 0.91173 1.15026 1.23486 0.90511 1.25895 0.99200 0.95379 0.93595 1.69826 1.14653 1.21748 1.35718 0.86349 0.79371 0.82073 0.79238 1.19617 1.20054 1.18406 1.20968 0.95641 1.06372 1.01711 1.20301 0.96811 0.96946 0.94757 1.21750 0.92607 0.94678 0.96593 0.92777 0.92513 0.91821 0.90524 0.88290 0.90310 0.87286 0.88069 0.90489 0.92005 0.95996 0.89931 0.86618 0.90947 0.89169 0.89622 0.90673 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.81 37.16 0.33 -0.88 16 2 C -0.09 -1.02 2.51 -92.68 -0.23 -1.26 16 3 H 0.10 1.27 6.64 -51.93 -0.35 0.92 16 4 C -0.11 -1.22 5.05 36.85 0.19 -1.03 16 5 S -0.25 -3.12 21.74 -107.50 -2.34 -5.46 16 6 C -0.09 -1.19 6.30 35.83 0.23 -0.97 16 7 C 0.05 0.81 4.73 -4.00 -0.02 0.79 16 8 N -0.56 -8.50 4.41 -237.63 -1.05 -9.54 16 9 C 0.13 2.14 5.21 -4.97 -0.03 2.12 16 10 C -0.21 -4.29 4.98 -104.33 -0.52 -4.81 16 11 C -0.10 -2.14 7.82 -39.66 -0.31 -2.45 16 12 C -0.16 -4.17 8.70 -38.88 -0.34 -4.51 16 13 C 0.11 2.97 5.57 -106.83 -0.60 2.37 16 14 C -0.46 -12.23 9.05 -37.74 -0.34 -12.57 16 15 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.33 10.97 55.55 0.61 -19.72 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.23 -5.54 9.80 -38.88 -0.38 -5.92 16 23 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 24 C 0.07 0.88 4.73 -5.27 -0.02 0.86 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.82 6.88 -48.78 -0.34 0.48 16 29 H 0.10 0.96 7.78 -48.77 -0.38 0.58 16 30 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 31 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.73 4.77 -51.93 -0.25 1.48 16 33 H 0.08 1.17 6.75 -51.93 -0.35 0.82 16 34 H 0.06 1.00 7.87 -51.93 -0.41 0.59 16 35 H 0.02 0.36 7.86 -51.93 -0.41 -0.04 16 36 H 0.08 1.65 7.58 -52.48 -0.40 1.26 16 37 H 0.12 3.04 6.18 -52.48 -0.32 2.72 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.07 0.91 7.69 -51.93 -0.40 0.52 16 42 H 0.02 0.31 6.73 -51.93 -0.35 -0.04 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -26.22 335.62 -11.71 -37.94 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.44 Total: 6.56 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -2.52 Total: -28.34 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: -0.44 Total: -29.27 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.34 Total: -5.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.22 -11.71 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335694215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.733 kcal (2) G-P(sol) polarization free energy of solvation -26.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds