Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.42106 * 2 1 4 4 C 1.55292 * 109.42736 * 240.10488 * 2 1 3 5 5 C 1.45393 * 109.84602 * 168.68500 * 4 2 1 6 6 N 1.46829 * 115.64206 * 63.58164 * 5 4 2 7 7 C 1.46899 * 111.00314 * 142.12836 * 6 5 4 8 8 C 1.50697 * 109.47157 * 170.00064 * 7 6 5 9 9 C 1.38628 * 119.75375 * 90.00167 * 8 7 6 10 10 C 1.37618 * 120.25366 * 180.02562 * 9 8 7 11 11 C 1.40709 * 119.74028 * 359.97438 * 10 9 8 12 12 C 1.41403 * 120.24299 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99700 * 207.11769 * 12 11 10 14 14 C 1.39942 * 119.99726 * 27.11332 * 12 11 10 15 15 N 1.30825 * 119.99688 * 196.95950 * 14 12 11 16 16 Si 1.86797 * 120.00022 * 16.96649 * 14 12 11 17 17 H 1.48509 * 109.46821 * 264.88350 * 16 14 12 18 18 H 1.48500 * 109.47263 * 24.88086 * 16 14 12 19 19 H 1.48492 * 109.47338 * 144.88671 * 16 14 12 20 20 C 1.40714 * 119.51553 * 0.27867 * 11 10 9 21 21 C 1.37624 * 119.74447 * 359.44468 * 20 11 10 22 22 C 1.45581 * 105.37954 * 262.37882 * 6 5 4 23 23 C 1.54642 * 108.47608 * 107.72867 * 22 6 5 24 24 S 1.79391 * 109.42980 * 119.84410 * 2 1 3 25 25 H 1.09008 * 109.47210 * 179.89729 * 1 2 3 26 26 H 1.09002 * 109.47791 * 299.89334 * 1 2 3 27 27 H 1.09001 * 109.47653 * 59.89886 * 1 2 3 28 28 H 1.08999 * 109.40768 * 48.56970 * 4 2 1 29 29 H 1.08998 * 109.40876 * 288.79781 * 4 2 1 30 30 H 1.09002 * 108.24974 * 301.97825 * 5 4 2 31 31 H 1.09005 * 108.09085 * 185.06217 * 5 4 2 32 32 H 1.09003 * 109.47018 * 49.99384 * 7 6 5 33 33 H 1.09002 * 109.46741 * 290.00241 * 7 6 5 34 34 H 1.08004 * 119.87195 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.12605 * 179.97438 * 10 9 8 36 36 H 0.97003 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.13039 * 179.72142 * 20 11 10 38 38 H 1.07995 * 119.88041 * 180.28053 * 21 20 11 39 39 H 1.09008 * 109.63527 * 227.41855 * 22 6 5 40 40 H 1.09003 * 109.63987 * 348.02442 * 22 6 5 41 41 H 1.08993 * 109.26802 * 200.99146 * 23 22 6 42 42 H 1.08997 * 109.23435 * 81.51160 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 6 2.0465 -0.7299 -1.2696 5 6 3.4753 -0.5070 -1.4202 6 7 4.3197 -1.0519 -0.3498 7 6 5.5723 -1.5950 -0.8920 8 6 6.5119 -1.9180 0.2410 9 6 6.4851 -3.1776 0.8193 10 6 7.3383 -3.4834 1.8549 11 6 8.2405 -2.5119 2.3260 12 6 9.1223 -2.8148 3.3891 13 1 9.4827 -2.0263 4.0331 14 6 9.5278 -4.1364 3.6068 15 7 10.0581 -4.4774 4.7531 16 14 9.3120 -5.4133 2.2607 17 1 8.0377 -6.1459 2.4730 18 1 9.2804 -4.7382 0.9384 19 1 10.4461 -6.3711 2.3005 20 6 8.2553 -1.2349 1.7350 21 6 7.3970 -0.9531 0.6968 22 6 4.5801 0.0673 0.5441 23 6 3.7700 -0.1449 1.8441 24 16 2.1267 -0.8419 1.4674 25 1 -0.3634 -1.0277 -0.0018 26 1 -0.3635 0.5122 0.8909 27 1 -0.3634 0.5154 -0.8890 28 1 1.5254 -0.3447 -2.1461 29 1 1.8546 -1.7988 -1.1762 30 1 3.6489 0.5675 -1.4784 31 1 3.7899 -0.9532 -2.3637 32 1 6.0342 -0.8574 -1.5483 33 1 5.3600 -2.5022 -1.4579 34 1 5.7914 -3.9215 0.4562 35 1 7.3153 -4.4652 2.3042 36 1 10.3388 -5.3936 4.9041 37 1 8.9407 -0.4803 2.0918 38 1 7.4097 0.0247 0.2386 39 1 5.6439 0.1093 0.7783 40 1 4.2702 0.9971 0.0669 41 1 3.6469 0.8118 2.3515 42 1 4.3106 -0.8309 2.4962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336546230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = 29.305867 kcal Electronic energy + Delta-G solvation = -21294.670110 eV Core-core repulsion = 18365.537819 eV Total energy + Delta-G solvation = -2929.132292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.19945 -37.50209 -34.84918 -33.57116 -31.36317 -30.84174 -29.74974 -28.96914 -26.19898 -23.65879 -23.29592 -21.88777 -21.48433 -20.73592 -19.81824 -17.47421 -16.41890 -16.02308 -15.55647 -15.42645 -14.67973 -14.49835 -14.10794 -13.95710 -13.82932 -13.43737 -13.31651 -12.96308 -12.74328 -12.36496 -12.13301 -11.94284 -11.78660 -11.64879 -11.53618 -11.20664 -11.07722 -10.82132 -10.73275 -10.58124 -10.38168 -10.13559 -9.78042 -9.55719 -9.40065 -9.14204 -8.25945 -7.70211 -7.56777 -7.14298 -6.98623 -4.51285 1.94098 2.51728 2.66073 2.99409 3.10269 3.21331 3.30596 3.96150 4.10953 4.49585 4.55544 4.84511 5.03930 5.09584 5.19427 5.32971 5.35952 5.42159 5.46410 5.58537 5.70000 5.70527 5.75439 5.80574 5.87650 5.95700 6.04168 6.06031 6.09325 6.15904 6.21663 6.25704 6.51977 6.82104 6.86000 7.13515 7.20192 7.32479 7.41412 7.57296 7.78049 7.86508 8.09249 8.32120 8.62878 8.77140 10.03462 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.004085 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.332294 B = 6853.525893 C = 7011.422871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 H 0.075 0.925 4 C -0.102 4.102 5 C 0.036 3.964 6 N -0.493 5.493 7 C 0.114 3.886 8 C -0.218 4.218 9 C -0.047 4.047 10 C -0.243 4.243 11 C 0.096 3.904 12 C -0.443 4.443 13 H 0.090 0.910 14 C 0.082 3.918 15 N -0.807 5.807 16 Si 0.917 3.083 17 H -0.270 1.270 18 H -0.243 1.243 19 H -0.294 1.294 20 C -0.212 4.212 21 C -0.077 4.077 22 C 0.021 3.979 23 C -0.065 4.065 24 S -0.237 6.237 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 7.267 -10.522 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.192 4.192 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.092 4.092 6 N -0.216 5.216 7 C -0.012 4.012 8 C -0.220 4.220 9 C -0.066 4.066 10 C -0.262 4.262 11 C 0.093 3.907 12 C -0.472 4.472 13 H 0.108 0.892 14 C -0.137 4.137 15 N -0.431 5.431 16 Si 0.744 3.256 17 H -0.197 1.197 18 H -0.166 1.166 19 H -0.222 1.222 20 C -0.232 4.232 21 C -0.095 4.095 22 C -0.109 4.109 23 C -0.214 4.214 24 S -0.009 6.009 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.705 5.942 -9.493 17.699 hybrid contribution 1.145 0.970 -1.453 2.089 sum -12.561 6.911 -10.946 18.038 Atomic orbital electron populations 1.21604 0.92423 1.02689 1.02015 1.23217 0.98755 1.00794 0.96435 0.90644 1.20846 0.95298 1.02074 0.95961 1.21025 0.95036 0.97808 0.95354 1.63441 1.15238 1.28533 1.14378 1.20942 0.87518 0.98109 0.94657 1.18827 1.03433 0.95744 1.03998 1.20398 0.96296 0.95057 0.94802 1.20976 1.01846 1.00000 1.03355 1.17726 0.90819 0.91552 0.90593 1.19561 1.23195 0.94210 1.10188 0.89243 1.26207 0.92064 0.99516 0.95890 1.69688 1.30317 1.20741 1.22309 0.86250 0.76964 0.79101 0.83278 1.19691 1.16633 1.22152 1.20915 1.03550 0.98278 1.00432 1.20422 0.95799 0.96298 0.97009 1.22994 1.02649 0.91602 0.93681 1.23942 0.94242 1.03009 1.00245 1.85939 1.20482 1.60354 1.34158 0.91886 0.91894 0.91857 0.91356 0.90107 0.94639 0.92236 0.95624 0.91163 0.88770 0.88411 0.90375 0.88366 0.89258 0.88231 0.93820 0.91021 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.17 37.16 0.34 -0.85 16 2 C -0.06 -0.71 2.66 -25.52 -0.07 -0.77 16 3 H 0.08 0.84 7.97 -51.77 -0.41 0.43 16 4 C -0.10 -1.10 5.08 -29.10 -0.15 -1.25 16 5 C 0.04 0.43 4.72 -7.44 -0.04 0.40 16 6 N -0.49 -7.29 4.01 -240.67 -0.97 -8.26 16 7 C 0.11 1.82 4.97 -4.98 -0.02 1.79 16 8 C -0.22 -4.24 4.75 -104.33 -0.50 -4.73 16 9 C -0.05 -1.00 9.67 -39.66 -0.38 -1.39 16 10 C -0.24 -5.81 7.08 -38.88 -0.28 -6.08 16 11 C 0.10 2.40 5.19 -106.83 -0.55 1.85 16 12 C -0.44 -11.91 9.60 -37.74 -0.36 -12.27 16 13 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 14 C 0.08 2.16 5.43 -17.34 -0.09 2.06 16 15 N -0.81 -21.48 13.93 55.55 0.77 -20.71 16 16 Si 0.92 20.94 24.41 -169.99 -4.15 16.79 16 17 H -0.27 -6.05 6.69 56.52 0.38 -5.67 16 18 H -0.24 -5.66 6.70 56.52 0.38 -5.28 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.21 -4.77 9.80 -38.87 -0.38 -5.15 16 21 C -0.08 -1.51 7.62 -39.66 -0.30 -1.81 16 22 C 0.02 0.30 5.07 -3.67 -0.02 0.28 16 23 C -0.07 -0.97 6.84 38.02 0.26 -0.71 16 24 S -0.24 -3.43 20.44 -107.50 -2.20 -5.62 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.08 0.99 8.12 -51.93 -0.42 0.56 16 30 H 0.04 0.41 6.47 -51.93 -0.34 0.07 16 31 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 32 H 0.03 0.38 8.02 -51.93 -0.42 -0.03 16 33 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.10 2.37 4.26 -52.49 -0.22 2.15 16 36 H 0.29 6.89 8.30 -40.82 -0.34 6.56 16 37 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 38 H 0.09 1.54 7.40 -52.49 -0.39 1.15 16 39 H 0.10 1.59 3.88 -51.92 -0.20 1.39 16 40 H 0.04 0.57 6.41 -51.93 -0.33 0.23 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -26.70 330.41 -10.63 -37.33 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.53 Total: 4.14 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.54 Total: -28.64 kcal Atomic # 7 Polarization: -28.78 SS G_CDS: -0.19 Total: -28.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.15 Total: 16.79 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.20 Total: -5.62 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.70 -10.63 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.639 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds