Wall clock time and date at job start Tue Mar 31 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.42106 * 2 1 4 4 C 1.55292 * 109.42736 * 240.10488 * 2 1 3 5 5 C 1.45393 * 109.84602 * 168.68500 * 4 2 1 6 6 N 1.46829 * 115.64206 * 63.58164 * 5 4 2 7 7 C 1.46899 * 111.00314 * 142.12836 * 6 5 4 8 8 C 1.50697 * 109.47157 * 170.00064 * 7 6 5 9 9 C 1.38628 * 119.75375 * 90.00167 * 8 7 6 10 10 C 1.37618 * 120.25366 * 180.02562 * 9 8 7 11 11 C 1.40709 * 119.74028 * 359.97438 * 10 9 8 12 12 C 1.41403 * 120.24299 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99700 * 207.11769 * 12 11 10 14 14 C 1.39942 * 119.99726 * 27.11332 * 12 11 10 15 15 N 1.30825 * 119.99688 * 196.95950 * 14 12 11 16 16 Si 1.86797 * 120.00022 * 16.96649 * 14 12 11 17 17 H 1.48509 * 109.46821 * 264.88350 * 16 14 12 18 18 H 1.48500 * 109.47263 * 24.88086 * 16 14 12 19 19 H 1.48492 * 109.47338 * 144.88671 * 16 14 12 20 20 C 1.40714 * 119.51553 * 0.27867 * 11 10 9 21 21 C 1.37624 * 119.74447 * 359.44468 * 20 11 10 22 22 C 1.45581 * 105.37954 * 262.37882 * 6 5 4 23 23 C 1.54642 * 108.47608 * 107.72867 * 22 6 5 24 24 S 1.79391 * 109.42980 * 119.84410 * 2 1 3 25 25 H 1.09008 * 109.47210 * 179.89729 * 1 2 3 26 26 H 1.09002 * 109.47791 * 299.89334 * 1 2 3 27 27 H 1.09001 * 109.47653 * 59.89886 * 1 2 3 28 28 H 1.08999 * 109.40768 * 48.56970 * 4 2 1 29 29 H 1.08998 * 109.40876 * 288.79781 * 4 2 1 30 30 H 1.09002 * 108.24974 * 301.97825 * 5 4 2 31 31 H 1.09005 * 108.09085 * 185.06217 * 5 4 2 32 32 H 1.09003 * 109.47018 * 49.99384 * 7 6 5 33 33 H 1.09002 * 109.46741 * 290.00241 * 7 6 5 34 34 H 1.08004 * 119.87195 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.12605 * 179.97438 * 10 9 8 36 36 H 0.97003 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.13039 * 179.72142 * 20 11 10 38 38 H 1.07995 * 119.88041 * 180.28053 * 21 20 11 39 39 H 1.09008 * 109.63527 * 227.41855 * 22 6 5 40 40 H 1.09003 * 109.63987 * 348.02442 * 22 6 5 41 41 H 1.08993 * 109.26802 * 200.99146 * 23 22 6 42 42 H 1.08997 * 109.23435 * 81.51160 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 6 2.0465 -0.7299 -1.2696 5 6 3.4753 -0.5070 -1.4202 6 7 4.3197 -1.0519 -0.3498 7 6 5.5723 -1.5950 -0.8920 8 6 6.5119 -1.9180 0.2410 9 6 6.4851 -3.1776 0.8193 10 6 7.3383 -3.4834 1.8549 11 6 8.2405 -2.5119 2.3260 12 6 9.1223 -2.8148 3.3891 13 1 9.4827 -2.0263 4.0331 14 6 9.5278 -4.1364 3.6068 15 7 10.0581 -4.4774 4.7531 16 14 9.3120 -5.4133 2.2607 17 1 8.0377 -6.1459 2.4730 18 1 9.2804 -4.7382 0.9384 19 1 10.4461 -6.3711 2.3005 20 6 8.2553 -1.2349 1.7350 21 6 7.3970 -0.9531 0.6968 22 6 4.5801 0.0673 0.5441 23 6 3.7700 -0.1449 1.8441 24 16 2.1267 -0.8419 1.4674 25 1 -0.3634 -1.0277 -0.0018 26 1 -0.3635 0.5122 0.8909 27 1 -0.3634 0.5154 -0.8890 28 1 1.5254 -0.3447 -2.1461 29 1 1.8546 -1.7988 -1.1762 30 1 3.6489 0.5675 -1.4784 31 1 3.7899 -0.9532 -2.3637 32 1 6.0342 -0.8574 -1.5483 33 1 5.3600 -2.5022 -1.4579 34 1 5.7914 -3.9215 0.4562 35 1 7.3153 -4.4652 2.3042 36 1 10.3388 -5.3936 4.9041 37 1 8.9407 -0.4803 2.0918 38 1 7.4097 0.0247 0.2386 39 1 5.6439 0.1093 0.7783 40 1 4.2702 0.9971 0.0669 41 1 3.6469 0.8118 2.3515 42 1 4.3106 -0.8309 2.4962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336546230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:17 Heat of formation + Delta-G solvation = 15.398466 kcal Electronic energy + Delta-G solvation = -21295.273181 eV Core-core repulsion = 18365.537819 eV Total energy + Delta-G solvation = -2929.735362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.52756 -38.99677 -36.05853 -35.21678 -32.93612 -31.99004 -31.44707 -30.20514 -27.70515 -25.15492 -24.23832 -23.40560 -22.89054 -21.89737 -21.31491 -19.37732 -17.64316 -17.36906 -16.90493 -16.60741 -15.98630 -15.90396 -15.67862 -15.26681 -15.23571 -14.71351 -14.43936 -14.22103 -14.14375 -13.96185 -13.68711 -13.30530 -13.16520 -12.69791 -12.66389 -12.48456 -12.46395 -12.23961 -12.10749 -12.02466 -11.73144 -11.49627 -11.38085 -11.27150 -10.96726 -10.44469 -9.51153 -9.39963 -9.26907 -8.92192 -8.26982 -6.50223 0.75546 0.86256 0.91863 1.24892 1.39108 1.47117 1.95483 2.10251 2.52737 3.12767 3.57998 3.65656 3.95128 4.02870 4.04446 4.11972 4.20685 4.30629 4.39036 4.42878 4.49455 4.60380 4.71508 4.73000 4.79128 4.85442 4.89043 4.91769 4.94338 4.98587 5.04567 5.06147 5.11400 5.31346 5.31851 5.37819 5.61324 5.74450 5.89591 6.03229 6.17537 6.22580 6.26255 6.41609 6.73956 6.83660 8.16354 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.004085 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.332294 B = 6853.525893 C = 7011.422871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.051 4.051 3 H 0.083 0.917 4 C -0.098 4.098 5 C 0.034 3.966 6 N -0.508 5.508 7 C 0.117 3.883 8 C -0.190 4.190 9 C -0.058 4.058 10 C -0.255 4.255 11 C 0.075 3.925 12 C -0.484 4.484 13 H 0.055 0.945 14 C 0.046 3.954 15 N -0.851 5.851 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.250 1.250 19 H -0.280 1.280 20 C -0.223 4.223 21 C -0.069 4.069 22 C 0.025 3.975 23 C -0.061 4.061 24 S -0.284 6.284 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.293 0.707 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 8.534 -14.408 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.180 4.180 3 H 0.101 0.899 4 C -0.138 4.138 5 C -0.093 4.093 6 N -0.231 5.231 7 C -0.009 4.009 8 C -0.192 4.192 9 C -0.077 4.077 10 C -0.274 4.274 11 C 0.073 3.927 12 C -0.514 4.514 13 H 0.073 0.927 14 C -0.169 4.169 15 N -0.478 5.478 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.174 1.174 19 H -0.207 1.207 20 C -0.242 4.242 21 C -0.087 4.087 22 C -0.105 4.105 23 C -0.210 4.210 24 S -0.057 6.057 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.202 7.216 -13.382 22.219 hybrid contribution 1.681 0.787 -0.416 1.902 sum -14.521 8.003 -13.798 21.571 Atomic orbital electron populations 1.21606 0.90914 1.02681 1.03213 1.23323 0.99772 1.00480 0.94385 0.89894 1.20843 0.94939 1.01254 0.96739 1.21099 0.95003 0.98542 0.94694 1.63349 1.14775 1.29312 1.15677 1.20920 0.87424 0.99436 0.93149 1.19343 1.02281 0.94378 1.03150 1.20694 0.96059 0.96600 0.94346 1.21051 1.02416 0.99599 1.04328 1.17851 0.91009 0.93073 0.90784 1.19540 1.25876 0.94143 1.11854 0.92682 1.26843 0.91719 1.00789 0.97513 1.69720 1.32722 1.21655 1.23689 0.85427 0.77508 0.77196 0.80362 1.18996 1.17351 1.20684 1.21122 1.04367 0.97490 1.01223 1.20753 0.94375 0.97931 0.95650 1.22976 1.01418 0.92601 0.93533 1.23848 0.94195 1.02676 1.00306 1.86140 1.20501 1.61733 1.37320 0.92504 0.92122 0.89170 0.88170 0.91619 0.93268 0.90955 0.93486 0.90223 0.86922 0.89252 0.89639 0.88209 0.85671 0.89818 0.91501 0.89731 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.17 71.98 0.66 -1.22 16 2 C -0.05 -0.95 2.66 31.38 0.08 -0.87 16 3 H 0.08 1.47 7.97 -2.49 -0.02 1.45 16 4 C -0.10 -1.68 5.08 29.06 0.15 -1.53 16 5 C 0.03 0.65 4.72 84.00 0.40 1.04 16 6 N -0.51 -13.06 4.01 -915.35 -3.67 -16.73 16 7 C 0.12 3.21 4.97 85.56 0.43 3.64 16 8 C -0.19 -6.83 4.75 -19.68 -0.09 -6.93 16 9 C -0.06 -2.41 9.67 22.22 0.21 -2.19 16 10 C -0.25 -12.27 7.08 22.73 0.16 -12.11 16 11 C 0.08 3.88 5.19 -21.29 -0.11 3.77 16 12 C -0.48 -27.73 9.60 23.46 0.23 -27.51 16 13 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 14 C 0.05 2.51 5.43 85.26 0.46 2.97 16 15 N -0.85 -47.87 13.93 21.83 0.30 -47.56 16 16 Si 0.97 44.27 24.41 68.60 1.67 45.94 16 17 H -0.26 -11.59 6.69 99.48 0.67 -10.93 16 18 H -0.25 -11.49 6.70 99.48 0.67 -10.83 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 C -0.22 -10.04 9.80 22.73 0.22 -9.82 16 21 C -0.07 -2.55 7.62 22.22 0.17 -2.38 16 22 C 0.02 0.64 5.07 87.11 0.44 1.08 16 23 C -0.06 -1.74 6.84 72.54 0.50 -1.24 16 24 S -0.28 -7.77 20.44 -56.49 -1.15 -8.93 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 29 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.05 0.83 6.47 -2.39 -0.02 0.82 16 31 H 0.07 1.23 7.58 -2.38 -0.02 1.21 16 32 H 0.05 1.13 8.02 -2.39 -0.02 1.11 16 33 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.09 4.40 4.26 -2.91 -0.01 4.39 16 36 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 37 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.13 3.79 7.40 -2.91 -0.02 3.77 16 39 H 0.08 2.41 3.88 -2.38 -0.01 2.40 16 40 H 0.07 1.42 6.41 -2.39 -0.02 1.41 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -61.16 330.41 1.97 -59.20 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.91 Total: 21.38 kcal Atomic # 6 Polarization: -57.19 SS G_CDS: 3.90 Total: -53.29 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -3.37 Total: -64.30 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.94 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.15 Total: -8.93 kcal Total: -61.16 1.97 -59.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.594 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds