Wall clock time and date at job start Tue Mar 31 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.57682 * 2 1 4 4 C 1.45862 * 109.52717 * 120.16477 * 2 1 3 5 5 C 1.53011 * 115.26734 * 184.11579 * 4 2 1 6 6 N 1.45537 * 106.89911 * 267.49678 * 5 4 2 7 7 C 1.46904 * 111.00092 * 227.36361 * 6 5 4 8 8 C 1.50699 * 109.46894 * 169.99958 * 7 6 5 9 9 C 1.38631 * 119.74515 * 269.71779 * 8 7 6 10 10 C 1.37623 * 120.24785 * 179.76569 * 9 8 7 11 11 C 1.40723 * 119.73975 * 0.48980 * 10 9 8 12 12 C 1.41395 * 120.24057 * 179.78612 * 11 10 9 13 13 H 1.08001 * 120.00207 * 204.37253 * 12 11 10 14 14 C 1.39946 * 119.99899 * 24.37993 * 12 11 10 15 15 N 1.30816 * 120.00427 * 17.86271 * 14 12 11 16 16 Si 1.86808 * 119.99875 * 197.86346 * 14 12 11 17 17 H 1.48506 * 109.46927 * 60.00035 * 16 14 12 18 18 H 1.48498 * 109.47070 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47074 * 300.00041 * 16 14 12 20 20 C 1.40711 * 119.51498 * 359.76908 * 11 10 9 21 21 C 1.37620 * 119.74076 * 359.97438 * 20 11 10 22 22 C 1.46853 * 110.43671 * 103.80724 * 6 5 4 23 23 C 1.53617 * 116.10735 * 318.08082 * 22 6 5 24 24 S 1.80171 * 113.03983 * 315.59392 * 23 22 6 25 25 H 1.08998 * 109.47226 * 299.83434 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.83008 * 1 2 3 27 27 H 1.09001 * 109.47338 * 179.83330 * 1 2 3 28 28 H 1.09000 * 108.32455 * 305.61959 * 4 2 1 29 29 H 1.09001 * 108.32233 * 62.61681 * 4 2 1 30 30 H 1.09004 * 109.96994 * 26.84707 * 5 4 2 31 31 H 1.09005 * 109.96879 * 148.05761 * 5 4 2 32 32 H 1.09001 * 109.46650 * 289.99707 * 7 6 5 33 33 H 1.08995 * 109.47215 * 49.99435 * 7 6 5 34 34 H 1.07993 * 119.87930 * 0.02562 * 9 8 7 35 35 H 1.07992 * 120.13013 * 180.27822 * 10 9 8 36 36 H 0.96998 * 120.00527 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.12560 * 180.02562 * 20 11 10 38 38 H 1.08003 * 119.86889 * 180.02562 * 21 20 11 39 39 H 1.08998 * 108.15418 * 79.80600 * 22 6 5 40 40 H 1.09003 * 108.15496 * 196.35619 * 22 6 5 41 41 H 1.09001 * 108.77004 * 76.52006 * 23 22 6 42 42 H 1.09004 * 108.76999 * 194.67792 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0175 -0.6908 1.1886 5 6 3.5366 -0.6824 1.3718 6 7 4.0447 -1.8950 0.7477 7 6 4.9911 -2.5862 1.6335 8 6 5.3058 -3.9473 1.0682 9 6 4.5325 -5.0388 1.4322 10 6 4.8076 -6.2856 0.9185 11 6 5.8851 -6.4517 0.0287 12 6 6.1801 -7.7287 -0.5020 13 1 7.1795 -7.9537 -0.8439 14 6 5.1769 -8.7010 -0.5842 15 7 3.9187 -8.3507 -0.5100 16 14 5.6345 -10.4992 -0.8001 17 1 6.4674 -10.9393 0.3480 18 1 4.3990 -11.3209 -0.8583 19 1 6.4011 -10.6670 -2.0608 20 6 6.6665 -5.3376 -0.3294 21 6 6.3696 -4.0993 0.1925 22 6 4.6657 -1.5843 -0.5462 23 6 3.9197 -0.5718 -1.4284 24 16 2.1442 -0.8703 -1.4972 25 1 -0.3633 0.5112 0.8914 26 1 -0.3633 0.5165 -0.8884 27 1 -0.3634 -1.0276 -0.0030 28 1 1.5641 -0.2271 2.0646 29 1 1.6835 -1.7274 1.1436 30 1 3.9654 0.1941 0.8859 31 1 3.7835 -0.6770 2.4335 32 1 5.9090 -2.0034 1.7100 33 1 4.5478 -2.6973 2.6230 34 1 3.7084 -4.9096 2.1181 35 1 4.2012 -7.1337 1.1998 36 1 3.2234 -9.0246 -0.5666 37 1 7.4954 -5.4538 -1.0118 38 1 6.9678 -3.2428 -0.0813 39 1 5.6673 -1.1976 -0.3581 40 1 4.7663 -2.5138 -1.1067 41 1 4.0920 0.4300 -1.0350 42 1 4.3234 -0.6232 -2.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336546231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:30 Heat of formation + Delta-G solvation = 17.363362 kcal Electronic energy + Delta-G solvation = -21040.716673 eV Core-core repulsion = 18111.066516 eV Total energy + Delta-G solvation = -2929.650158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.72267 -37.19731 -35.11178 -33.62144 -31.32922 -30.24075 -29.26755 -28.53605 -26.11271 -23.79189 -23.53240 -21.88886 -20.91610 -20.24332 -19.63974 -17.24468 -16.47896 -15.75701 -15.65152 -15.30542 -14.81902 -14.36170 -14.08669 -13.86764 -13.62272 -13.43878 -12.96291 -12.73752 -12.48860 -11.99448 -11.93523 -11.88108 -11.62663 -11.53620 -11.25637 -11.11420 -10.98816 -10.87728 -10.84341 -10.65795 -10.36001 -10.31994 -9.58491 -9.46603 -9.32382 -9.07538 -7.91589 -7.40325 -7.37994 -7.22997 -6.70982 -4.30329 1.83208 2.68325 2.79567 3.08882 3.11300 3.12693 3.21909 3.96190 4.26233 4.61242 4.73224 4.85978 4.93440 5.06309 5.07823 5.35143 5.40811 5.53382 5.57643 5.70714 5.71637 5.75376 5.82994 5.90216 5.94868 5.99822 6.04782 6.22395 6.34622 6.38932 6.47884 6.49280 7.00179 7.11336 7.33320 7.37786 7.47924 7.52568 7.66565 7.92745 8.10074 8.19547 8.35255 8.69598 8.94351 9.03144 10.23150 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.003804 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.486332 B = 7358.299656 C = 7722.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 H 0.076 0.924 4 C -0.122 4.122 5 C 0.043 3.957 6 N -0.513 5.513 7 C 0.122 3.878 8 C -0.208 4.208 9 C -0.077 4.077 10 C -0.167 4.167 11 C 0.113 3.887 12 C -0.465 4.465 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.790 5.790 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.228 4.228 21 C -0.084 4.084 22 C 0.060 3.940 23 C -0.085 4.085 24 S -0.244 6.244 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.281 0.719 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 14.356 2.389 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.085 4.085 6 N -0.237 5.237 7 C -0.004 4.004 8 C -0.209 4.209 9 C -0.096 4.096 10 C -0.186 4.186 11 C 0.111 3.889 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.415 5.415 16 Si 0.730 3.270 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.248 4.248 21 C -0.103 4.103 22 C -0.070 4.070 23 C -0.234 4.234 24 S -0.018 6.018 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.985 13.383 1.508 14.361 hybrid contribution 1.601 0.381 0.752 1.809 sum -3.384 13.764 2.259 14.353 Atomic orbital electron populations 1.21626 0.92018 1.03236 1.02191 1.22008 0.99183 0.99930 0.95330 0.90550 1.20692 0.96109 1.03195 0.96094 1.22059 0.95090 0.92339 0.99053 1.62254 1.37562 1.21067 1.02856 1.20883 0.92081 0.93027 0.94433 1.18806 1.01386 0.92974 1.07758 1.20462 0.97039 0.93059 0.99057 1.21296 1.01355 0.96091 0.99893 1.17597 0.90500 0.92042 0.88776 1.19559 0.96857 0.96237 1.36821 0.90634 1.25892 0.94384 1.01210 0.92617 1.69826 1.00423 1.35995 1.35258 0.86410 0.78877 0.81780 0.79885 1.18877 1.20338 1.19062 1.20909 1.04721 0.92812 1.06309 1.20319 0.96696 0.95786 0.97503 1.22192 0.93995 0.99355 0.91472 1.23384 0.95195 1.01086 1.03726 1.86931 1.05105 1.75204 1.34540 0.91443 0.91908 0.91416 0.92220 0.89098 0.94119 0.91422 0.96031 0.91461 0.89582 0.86582 0.90832 0.89311 0.90181 0.95255 0.89384 0.90934 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.15 37.16 0.34 -0.96 16 2 C -0.04 -0.41 2.88 -30.11 -0.09 -0.50 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.47 4.34 -30.10 -0.13 -1.60 16 5 C 0.04 0.56 5.41 -4.55 -0.02 0.53 16 6 N -0.51 -8.26 4.07 -236.84 -0.96 -9.22 16 7 C 0.12 2.11 4.88 -4.97 -0.02 2.08 16 8 C -0.21 -4.45 4.93 -104.33 -0.51 -4.97 16 9 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 10 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 11 C 0.11 3.05 5.58 -106.82 -0.60 2.46 16 12 C -0.47 -12.51 9.05 -37.74 -0.34 -12.85 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.79 -20.80 10.95 55.55 0.61 -20.19 16 16 Si 0.91 18.89 29.60 -169.99 -5.03 13.85 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 21 C -0.08 -1.86 8.27 -39.66 -0.33 -2.19 16 22 C 0.06 0.94 4.45 -3.53 -0.02 0.92 16 23 C -0.08 -1.13 5.60 37.48 0.21 -0.92 16 24 S -0.24 -3.53 21.23 -107.50 -2.28 -5.81 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 30 H 0.04 0.49 6.06 -51.93 -0.31 0.17 16 31 H 0.07 0.81 7.44 -51.93 -0.39 0.42 16 32 H 0.02 0.35 7.84 -51.93 -0.41 -0.05 16 33 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 34 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 36 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.08 1.58 8.03 -52.48 -0.42 1.16 16 39 H 0.03 0.44 7.78 -51.93 -0.40 0.04 16 40 H 0.09 1.67 6.97 -51.93 -0.36 1.31 16 41 H 0.07 0.83 7.03 -51.74 -0.36 0.47 16 42 H 0.10 1.29 8.14 -51.74 -0.42 0.87 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -27.64 339.07 -11.98 -39.63 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.72 Total: 5.68 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -2.70 Total: -29.05 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: -0.36 Total: -29.42 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.28 Total: -5.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.64 -11.98 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds