Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.57682 * 2 1 4 4 C 1.45862 * 109.52717 * 120.16477 * 2 1 3 5 5 C 1.53011 * 115.26734 * 184.11579 * 4 2 1 6 6 N 1.45537 * 106.89911 * 267.49678 * 5 4 2 7 7 C 1.46904 * 111.00092 * 227.36361 * 6 5 4 8 8 C 1.50699 * 109.46894 * 169.99958 * 7 6 5 9 9 C 1.38631 * 119.74515 * 269.71779 * 8 7 6 10 10 C 1.37623 * 120.24785 * 179.76569 * 9 8 7 11 11 C 1.40723 * 119.73975 * 0.48980 * 10 9 8 12 12 C 1.41395 * 120.24057 * 179.78612 * 11 10 9 13 13 H 1.08001 * 120.00207 * 204.37253 * 12 11 10 14 14 C 1.39946 * 119.99899 * 24.37993 * 12 11 10 15 15 N 1.30816 * 120.00427 * 17.86271 * 14 12 11 16 16 Si 1.86808 * 119.99875 * 197.86346 * 14 12 11 17 17 H 1.48506 * 109.46927 * 60.00035 * 16 14 12 18 18 H 1.48498 * 109.47070 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47074 * 300.00041 * 16 14 12 20 20 C 1.40711 * 119.51498 * 359.76908 * 11 10 9 21 21 C 1.37620 * 119.74076 * 359.97438 * 20 11 10 22 22 C 1.46853 * 110.43671 * 103.80724 * 6 5 4 23 23 C 1.53617 * 116.10735 * 318.08082 * 22 6 5 24 24 S 1.80171 * 113.03983 * 315.59392 * 23 22 6 25 25 H 1.08998 * 109.47226 * 299.83434 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.83008 * 1 2 3 27 27 H 1.09001 * 109.47338 * 179.83330 * 1 2 3 28 28 H 1.09000 * 108.32455 * 305.61959 * 4 2 1 29 29 H 1.09001 * 108.32233 * 62.61681 * 4 2 1 30 30 H 1.09004 * 109.96994 * 26.84707 * 5 4 2 31 31 H 1.09005 * 109.96879 * 148.05761 * 5 4 2 32 32 H 1.09001 * 109.46650 * 289.99707 * 7 6 5 33 33 H 1.08995 * 109.47215 * 49.99435 * 7 6 5 34 34 H 1.07993 * 119.87930 * 0.02562 * 9 8 7 35 35 H 1.07992 * 120.13013 * 180.27822 * 10 9 8 36 36 H 0.96998 * 120.00527 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.12560 * 180.02562 * 20 11 10 38 38 H 1.08003 * 119.86889 * 180.02562 * 21 20 11 39 39 H 1.08998 * 108.15418 * 79.80600 * 22 6 5 40 40 H 1.09003 * 108.15496 * 196.35619 * 22 6 5 41 41 H 1.09001 * 108.77004 * 76.52006 * 23 22 6 42 42 H 1.09004 * 108.76999 * 194.67792 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0175 -0.6908 1.1886 5 6 3.5366 -0.6824 1.3718 6 7 4.0447 -1.8950 0.7477 7 6 4.9911 -2.5862 1.6335 8 6 5.3058 -3.9473 1.0682 9 6 4.5325 -5.0388 1.4322 10 6 4.8076 -6.2856 0.9185 11 6 5.8851 -6.4517 0.0287 12 6 6.1801 -7.7287 -0.5020 13 1 7.1795 -7.9537 -0.8439 14 6 5.1769 -8.7010 -0.5842 15 7 3.9187 -8.3507 -0.5100 16 14 5.6345 -10.4992 -0.8001 17 1 6.4674 -10.9393 0.3480 18 1 4.3990 -11.3209 -0.8583 19 1 6.4011 -10.6670 -2.0608 20 6 6.6665 -5.3376 -0.3294 21 6 6.3696 -4.0993 0.1925 22 6 4.6657 -1.5843 -0.5462 23 6 3.9197 -0.5718 -1.4284 24 16 2.1442 -0.8703 -1.4972 25 1 -0.3633 0.5112 0.8914 26 1 -0.3633 0.5165 -0.8884 27 1 -0.3634 -1.0276 -0.0030 28 1 1.5641 -0.2271 2.0646 29 1 1.6835 -1.7274 1.1436 30 1 3.9654 0.1941 0.8859 31 1 3.7835 -0.6770 2.4335 32 1 5.9090 -2.0034 1.7100 33 1 4.5478 -2.6973 2.6230 34 1 3.7084 -4.9096 2.1181 35 1 4.2012 -7.1337 1.1998 36 1 3.2234 -9.0246 -0.5666 37 1 7.4954 -5.4538 -1.0118 38 1 6.9678 -3.2428 -0.0813 39 1 5.6673 -1.1976 -0.3581 40 1 4.7663 -2.5138 -1.1067 41 1 4.0920 0.4300 -1.0350 42 1 4.3234 -0.6232 -2.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336546231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = 3.986534 kcal Electronic energy + Delta-G solvation = -21041.296736 eV Core-core repulsion = 18111.066516 eV Total energy + Delta-G solvation = -2930.230221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.11626 -38.80270 -36.27401 -35.36817 -32.80036 -31.55949 -31.14582 -29.85389 -27.71450 -25.14628 -24.77909 -23.04586 -22.76214 -21.71453 -21.02600 -19.19228 -17.54285 -17.17072 -16.92435 -16.78785 -16.10948 -15.81345 -15.54997 -15.29498 -15.05257 -14.64091 -14.26508 -14.06091 -13.94236 -13.74365 -13.40694 -13.08175 -12.95486 -12.83264 -12.71270 -12.61323 -12.40268 -12.27470 -12.01436 -11.92052 -11.82123 -11.70593 -11.33270 -11.18336 -10.97539 -10.49836 -9.31106 -9.26894 -9.00441 -8.61056 -8.51380 -6.31158 0.84059 0.98609 1.18292 1.36988 1.48573 1.53263 1.69629 2.21094 2.68807 3.16013 3.72859 3.76048 3.85108 3.98257 4.00956 4.17579 4.29711 4.34259 4.46857 4.51595 4.53712 4.62379 4.65029 4.73882 4.78842 4.82647 4.85653 4.97349 5.06359 5.06709 5.09079 5.17535 5.27241 5.41048 5.46887 5.50176 5.73844 5.98231 6.11874 6.16189 6.33594 6.40520 6.43157 6.74213 6.96920 7.07743 8.35442 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.003804 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.486332 B = 7358.299656 C = 7722.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.020 4.020 3 H 0.099 0.901 4 C -0.117 4.117 5 C 0.044 3.956 6 N -0.531 5.531 7 C 0.127 3.873 8 C -0.192 4.192 9 C -0.085 4.085 10 C -0.192 4.192 11 C 0.080 3.920 12 C -0.506 4.506 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.245 4.245 21 C -0.082 4.082 22 C 0.064 3.936 23 C -0.070 4.070 24 S -0.313 6.313 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.287 0.713 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 16.782 3.444 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 H 0.117 0.883 4 C -0.157 4.157 5 C -0.084 4.084 6 N -0.256 5.256 7 C 0.001 3.999 8 C -0.193 4.193 9 C -0.104 4.104 10 C -0.211 4.211 11 C 0.078 3.922 12 C -0.536 4.536 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.265 4.265 21 C -0.100 4.100 22 C -0.066 4.066 23 C -0.219 4.219 24 S -0.087 6.087 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.023 15.833 2.564 16.807 hybrid contribution 1.570 -0.177 0.475 1.650 sum -3.453 15.656 3.039 16.318 Atomic orbital electron populations 1.21641 0.90956 1.02574 1.03666 1.22101 0.99904 1.00173 0.92642 0.88316 1.20633 0.95871 1.01637 0.97530 1.22150 0.95206 0.91175 0.99823 1.62083 1.37173 1.23317 1.02990 1.20821 0.93515 0.90763 0.94841 1.19285 0.99606 0.94730 1.05716 1.20705 0.97733 0.92789 0.99165 1.21256 1.01854 0.96784 1.01232 1.17932 0.91551 0.93070 0.89695 1.19813 0.97334 0.97552 1.38902 0.90903 1.26750 0.93911 1.05580 0.91683 1.69894 1.01462 1.37640 1.36263 0.85282 0.78868 0.75762 0.79944 1.18419 1.19154 1.18403 1.21123 1.04884 0.93529 1.06922 1.20616 0.96955 0.95653 0.96798 1.22106 0.95202 0.98067 0.91216 1.23307 0.93440 1.01459 1.03705 1.87232 1.07152 1.76591 1.37737 0.88784 0.91532 0.93156 0.89305 0.92265 0.92490 0.89885 0.94194 0.90150 0.88134 0.88574 0.90259 0.89000 0.87244 0.94036 0.93629 0.88340 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.15 71.98 0.66 -1.57 16 2 C -0.02 -0.41 2.88 28.41 0.08 -0.32 16 3 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.12 -2.46 4.34 28.41 0.12 -2.34 16 5 C 0.04 0.97 5.41 86.56 0.47 1.44 16 6 N -0.53 -15.84 4.07 -903.24 -3.68 -19.52 16 7 C 0.13 4.05 4.88 85.56 0.42 4.47 16 8 C -0.19 -8.08 4.93 -19.68 -0.10 -8.17 16 9 C -0.09 -4.06 9.67 22.22 0.21 -3.84 16 10 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 11 C 0.08 4.49 5.58 -21.29 -0.12 4.37 16 12 C -0.51 -28.56 9.05 23.46 0.21 -28.35 16 13 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 14 C 0.04 1.86 5.14 85.26 0.44 2.30 16 15 N -0.83 -45.43 10.95 21.83 0.24 -45.19 16 16 Si 0.98 39.71 29.60 68.60 2.03 41.74 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 21 C -0.08 -3.57 8.27 22.22 0.18 -3.39 16 22 C 0.06 1.90 4.45 86.52 0.39 2.28 16 23 C -0.07 -1.72 5.60 72.19 0.40 -1.31 16 24 S -0.31 -8.73 21.23 -56.49 -1.20 -9.93 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 29 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 30 H 0.06 1.08 6.06 -2.39 -0.01 1.07 16 31 H 0.08 1.58 7.44 -2.38 -0.02 1.57 16 32 H 0.04 1.15 7.84 -2.39 -0.02 1.13 16 33 H 0.08 2.37 7.79 -2.39 -0.02 2.36 16 34 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.10 5.56 6.15 -2.91 -0.02 5.55 16 36 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 37 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.11 4.10 8.03 -2.91 -0.02 4.08 16 39 H 0.04 1.12 7.78 -2.39 -0.02 1.10 16 40 H 0.05 1.72 6.97 -2.39 -0.02 1.71 16 41 H 0.10 1.88 7.03 -2.50 -0.02 1.86 16 42 H 0.11 2.54 8.14 -2.50 -0.02 2.52 16 Total: -1.00 -63.54 339.07 2.17 -61.38 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.98 Total: 28.51 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 3.79 Total: -56.97 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -3.44 Total: -64.72 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.20 Total: -9.93 kcal Total: -63.54 2.17 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.365 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds