Wall clock time and date at job start Tue Mar 31 2020 08:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46661 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.94067 * 269.72498 * 12 11 10 14 14 C 1.38147 * 120.05240 * 179.72926 * 13 12 11 15 15 C 1.38732 * 119.94345 * 0.54576 * 14 13 12 16 16 O 1.35904 * 120.05480 * 179.74778 * 15 14 13 17 17 C 1.42903 * 116.99771 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.46772 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.27303 * 54.30185 * 18 17 16 20 20 C 1.54946 * 110.30698 * 176.39080 * 18 17 16 21 21 C 1.55416 * 100.88962 * 155.29049 * 20 18 17 22 22 C 1.54381 * 102.31166 * 325.99167 * 21 20 18 23 23 O 1.43239 * 107.58797 * 21.28607 * 22 21 20 24 24 C 1.38731 * 119.88856 * 359.72677 * 15 14 13 25 25 C 1.38146 * 119.94570 * 0.02562 * 24 15 14 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.00902 * 110.99923 * 303.95945 * 10 9 7 30 30 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 31 31 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 32 32 H 1.07998 * 119.97517 * 0.02562 * 13 12 11 33 33 H 1.08004 * 120.02562 * 180.27296 * 14 13 12 34 34 H 1.08998 * 109.46960 * 299.99655 * 17 16 15 35 35 H 1.09001 * 109.47223 * 60.00627 * 17 16 15 36 36 H 1.08997 * 111.12474 * 273.27646 * 20 18 17 37 37 H 1.08994 * 111.12419 * 37.44690 * 20 18 17 38 38 H 1.09002 * 110.88126 * 207.75353 * 21 20 18 39 39 H 1.09007 * 110.93676 * 84.25241 * 21 20 18 40 40 H 1.09003 * 109.82728 * 261.77495 * 22 21 20 41 41 H 1.08993 * 109.83132 * 140.79867 * 22 21 20 42 42 H 1.07998 * 120.02600 * 179.97438 * 24 15 14 43 43 H 1.07993 * 119.97251 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 6 2.5151 -6.0259 0.0006 13 6 2.9740 -6.5420 -1.1972 14 6 3.9037 -7.5638 -1.1994 15 6 4.3683 -8.0798 0.0017 16 8 5.2790 -9.0886 0.0022 17 6 5.7144 -9.5702 -1.2708 18 6 6.7312 -10.6956 -1.0697 19 1 6.3135 -11.4720 -0.4287 20 6 7.1486 -11.2938 -2.4367 21 6 8.5480 -11.8735 -2.0885 22 6 9.0750 -10.8602 -1.0499 23 8 7.9431 -10.1766 -0.4991 24 6 3.9020 -7.5640 1.2022 25 6 2.9761 -6.5387 1.1990 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8407 -3.5486 -0.7808 30 1 0.8803 -4.9818 0.8896 31 1 0.8809 -4.9813 -0.8903 32 1 2.6090 -6.1427 -2.1320 33 1 4.2651 -7.9637 -2.1353 34 1 4.8578 -9.9493 -1.8281 35 1 6.1790 -8.7564 -1.8276 36 1 6.4618 -12.0811 -2.7472 37 1 7.2241 -10.5179 -3.1984 38 1 9.1896 -11.8953 -2.9694 39 1 8.4597 -12.8677 -1.6504 40 1 9.7388 -10.1447 -1.5352 41 1 9.6102 -11.3857 -0.2591 42 1 4.2618 -7.9643 2.1385 43 1 2.6132 -6.1366 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338395823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:11 Heat of formation + Delta-G solvation = -65.837400 kcal Electronic energy + Delta-G solvation = -21887.574387 eV Core-core repulsion = 18511.563503 eV Total energy + Delta-G solvation = -3376.010885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34199 -39.52972 -37.63782 -35.01501 -32.70657 -32.52722 -31.52508 -30.76161 -29.92973 -26.86136 -26.04369 -23.97027 -22.86232 -22.16832 -21.54208 -21.27294 -20.67012 -18.17063 -17.46134 -16.62701 -16.46460 -15.86435 -15.65867 -15.18409 -14.88355 -14.55205 -14.38191 -14.13337 -13.79827 -13.62431 -13.41622 -13.15289 -12.53033 -12.48845 -12.41445 -12.24216 -11.78560 -11.75835 -11.56530 -11.35613 -11.27996 -11.06298 -10.84358 -10.71544 -10.61784 -10.55829 -9.89756 -9.88623 -9.17324 -8.81880 -8.46692 -7.94709 -7.25314 -6.01361 -4.03157 1.52743 1.60585 3.00434 3.33607 3.35303 3.39504 3.44892 3.93476 3.95141 4.32078 4.39509 4.45893 4.65029 4.67952 4.78051 4.93654 4.97193 5.04480 5.06995 5.17927 5.21864 5.28264 5.34452 5.37077 5.43602 5.51618 5.57734 5.62761 5.67989 5.82246 6.00442 6.20881 6.29694 6.43365 6.52042 6.62075 6.93211 6.94950 7.26264 7.43298 7.47312 7.80661 8.14284 8.41669 8.62827 9.06249 9.61648 11.09697 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002267 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.846800 B =12349.918541 C =12819.725758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.098 3.902 12 C -0.102 4.102 13 C -0.077 4.077 14 C -0.210 4.210 15 C 0.118 3.882 16 O -0.310 6.310 17 C 0.062 3.938 18 C 0.083 3.917 19 H 0.082 0.918 20 C -0.149 4.149 21 C -0.155 4.155 22 C 0.047 3.953 23 O -0.370 6.370 24 C -0.152 4.152 25 C -0.060 4.060 26 H 0.261 0.739 27 H -0.014 1.014 28 H 0.029 0.971 29 H 0.329 0.671 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 -26.232 -5.393 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.032 4.032 12 C -0.103 4.103 13 C -0.096 4.096 14 C -0.229 4.229 15 C 0.074 3.926 16 O -0.224 6.224 17 C -0.014 4.014 18 C 0.026 3.974 19 H 0.100 0.900 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.030 4.030 23 O -0.289 6.289 24 C -0.170 4.170 25 C -0.078 4.078 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.047 0.953 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.375 -26.020 -4.382 29.583 hybrid contribution 0.062 0.790 -1.380 1.592 sum 13.436 -25.230 -5.763 29.160 Atomic orbital electron populations 1.69965 1.06065 1.26771 1.50997 1.24998 0.94899 0.99385 0.95379 0.86471 0.79817 0.82961 0.78004 1.20751 1.21244 1.19746 1.21191 0.93557 0.90208 1.50212 0.91940 1.19587 0.90616 0.87341 0.95823 1.60736 1.21016 1.00628 1.49084 1.20826 0.93254 0.88610 1.00483 1.19959 0.99751 0.97813 0.92745 1.20857 0.95702 0.95079 0.97961 1.21104 1.03199 1.02052 0.96535 1.18950 0.90314 0.89041 0.94344 1.86081 1.56520 1.49170 1.30612 1.22912 0.96485 0.96693 0.85263 1.22997 0.85850 0.94545 0.94029 0.90037 1.23263 0.97166 1.01293 0.96982 1.23136 0.96471 0.99716 0.99929 1.23163 0.89416 0.94473 0.95909 1.88556 1.13612 1.61109 1.65631 1.20401 1.00922 0.99700 0.96011 1.20896 0.94787 0.93814 0.98326 0.92932 0.99591 0.95311 0.85443 0.90945 0.95575 0.86089 0.86080 0.90807 0.91288 0.89270 0.89806 0.89708 0.90290 0.91146 0.91243 0.85502 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.19 5.15 5.44 -4.97 -0.03 5.12 16 10 N -0.68 -15.16 6.48 -116.34 -0.75 -15.91 16 11 C 0.10 1.79 5.81 -4.97 -0.03 1.76 16 12 C -0.10 -1.64 5.39 -104.60 -0.56 -2.20 16 13 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16 14 C -0.21 -2.77 9.04 -39.43 -0.36 -3.13 16 15 C 0.12 1.66 6.69 -39.22 -0.26 1.40 16 16 O -0.31 -4.11 10.14 -20.17 -0.20 -4.32 16 17 C 0.06 0.60 4.45 37.16 0.17 0.76 16 18 C 0.08 0.70 3.72 -25.70 -0.10 0.61 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 20 C -0.15 -0.79 6.58 -24.42 -0.16 -0.95 16 21 C -0.15 -0.74 7.02 -24.72 -0.17 -0.91 16 22 C 0.05 0.33 7.80 37.88 0.30 0.63 16 23 O -0.37 -4.01 11.04 -35.96 -0.40 -4.41 16 24 C -0.15 -2.17 9.99 -39.43 -0.39 -2.56 16 25 C -0.06 -0.90 9.69 -39.61 -0.38 -1.29 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.33 7.07 8.71 -39.29 -0.34 6.73 16 30 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.12 1.28 6.30 -52.48 -0.33 0.95 16 34 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -32.83 357.87 -9.96 -42.78 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.92 Total: 1.79 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.79 Total: -15.92 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.02 Total: -42.31 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.60 Total: -8.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.83 -9.96 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338395823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.053 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds