Wall clock time and date at job start Tue Mar 31 2020 08:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46661 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.94067 * 269.72498 * 12 11 10 14 14 C 1.38147 * 120.05240 * 179.72926 * 13 12 11 15 15 C 1.38732 * 119.94345 * 0.54576 * 14 13 12 16 16 O 1.35904 * 120.05480 * 179.74778 * 15 14 13 17 17 C 1.42903 * 116.99771 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.46772 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.27303 * 54.30185 * 18 17 16 20 20 C 1.54946 * 110.30698 * 176.39080 * 18 17 16 21 21 C 1.55416 * 100.88962 * 155.29049 * 20 18 17 22 22 C 1.54381 * 102.31166 * 325.99167 * 21 20 18 23 23 O 1.43239 * 107.58797 * 21.28607 * 22 21 20 24 24 C 1.38731 * 119.88856 * 359.72677 * 15 14 13 25 25 C 1.38146 * 119.94570 * 0.02562 * 24 15 14 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.00902 * 110.99923 * 303.95945 * 10 9 7 30 30 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 31 31 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 32 32 H 1.07998 * 119.97517 * 0.02562 * 13 12 11 33 33 H 1.08004 * 120.02562 * 180.27296 * 14 13 12 34 34 H 1.08998 * 109.46960 * 299.99655 * 17 16 15 35 35 H 1.09001 * 109.47223 * 60.00627 * 17 16 15 36 36 H 1.08997 * 111.12474 * 273.27646 * 20 18 17 37 37 H 1.08994 * 111.12419 * 37.44690 * 20 18 17 38 38 H 1.09002 * 110.88126 * 207.75353 * 21 20 18 39 39 H 1.09007 * 110.93676 * 84.25241 * 21 20 18 40 40 H 1.09003 * 109.82728 * 261.77495 * 22 21 20 41 41 H 1.08993 * 109.83132 * 140.79867 * 22 21 20 42 42 H 1.07998 * 120.02600 * 179.97438 * 24 15 14 43 43 H 1.07993 * 119.97251 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 6 2.5151 -6.0259 0.0006 13 6 2.9740 -6.5420 -1.1972 14 6 3.9037 -7.5638 -1.1994 15 6 4.3683 -8.0798 0.0017 16 8 5.2790 -9.0886 0.0022 17 6 5.7144 -9.5702 -1.2708 18 6 6.7312 -10.6956 -1.0697 19 1 6.3135 -11.4720 -0.4287 20 6 7.1486 -11.2938 -2.4367 21 6 8.5480 -11.8735 -2.0885 22 6 9.0750 -10.8602 -1.0499 23 8 7.9431 -10.1766 -0.4991 24 6 3.9020 -7.5640 1.2022 25 6 2.9761 -6.5387 1.1990 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8407 -3.5486 -0.7808 30 1 0.8803 -4.9818 0.8896 31 1 0.8809 -4.9813 -0.8903 32 1 2.6090 -6.1427 -2.1320 33 1 4.2651 -7.9637 -2.1353 34 1 4.8578 -9.9493 -1.8281 35 1 6.1790 -8.7564 -1.8276 36 1 6.4618 -12.0811 -2.7472 37 1 7.2241 -10.5179 -3.1984 38 1 9.1896 -11.8953 -2.9694 39 1 8.4597 -12.8677 -1.6504 40 1 9.7388 -10.1447 -1.5352 41 1 9.6102 -11.3857 -0.2591 42 1 4.2618 -7.9643 2.1385 43 1 2.6132 -6.1366 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338395823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:09 Heat of formation + Delta-G solvation = -87.159789 kcal Electronic energy + Delta-G solvation = -21888.498995 eV Core-core repulsion = 18511.563503 eV Total energy + Delta-G solvation = -3376.935493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25268 -40.28377 -38.75393 -36.74913 -34.58233 -33.23710 -32.40951 -31.84489 -31.18926 -28.60234 -26.89498 -25.53836 -23.84830 -23.43797 -22.64423 -22.18092 -21.78763 -19.15611 -18.63204 -18.07128 -17.40530 -16.87816 -16.59579 -16.49430 -16.31100 -15.90606 -15.49867 -15.34226 -15.13454 -14.59744 -14.38040 -14.32172 -14.20171 -13.48611 -13.44343 -13.34175 -13.05496 -12.79696 -12.69495 -12.60712 -12.33785 -12.31770 -12.21709 -11.91874 -11.82349 -11.76338 -11.64695 -11.29478 -10.66552 -10.52125 -9.93026 -9.21943 -8.97968 -8.22543 -6.33897 0.41907 0.44434 1.41134 1.43066 1.55083 2.15557 2.40169 2.77233 2.80475 3.10291 3.50284 3.72012 3.77907 3.87252 3.92308 3.95963 4.04602 4.09135 4.13890 4.29657 4.37088 4.40970 4.46339 4.49714 4.64520 4.73917 4.79809 4.82276 4.88560 4.94708 5.00103 5.06985 5.12857 5.21951 5.23829 5.31413 5.39371 5.60477 5.75460 5.81565 6.01489 6.05703 6.43112 6.47669 6.70140 6.87776 7.36827 8.88750 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002267 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.846800 B =12349.918541 C =12819.725758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.103 3.897 12 C -0.121 4.121 13 C -0.078 4.078 14 C -0.205 4.205 15 C 0.118 3.882 16 O -0.325 6.325 17 C 0.054 3.946 18 C 0.077 3.923 19 H 0.080 0.920 20 C -0.142 4.142 21 C -0.148 4.148 22 C 0.037 3.963 23 O -0.407 6.407 24 C -0.161 4.161 25 C -0.066 4.066 26 H 0.266 0.734 27 H -0.036 1.036 28 H 0.002 0.998 29 H 0.334 0.666 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.133 0.867 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.927 -27.233 -6.730 31.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.315 5.315 11 C -0.026 4.026 12 C -0.122 4.122 13 C -0.097 4.097 14 C -0.224 4.224 15 C 0.072 3.928 16 O -0.239 6.239 17 C -0.021 4.021 18 C 0.020 3.980 19 H 0.098 0.902 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.039 4.039 23 O -0.328 6.328 24 C -0.180 4.180 25 C -0.085 4.085 26 H 0.074 0.926 27 H -0.018 1.018 28 H 0.020 0.980 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.956 -27.055 -5.729 31.440 hybrid contribution -0.376 0.971 -0.959 1.415 sum 14.581 -26.084 -6.688 30.622 Atomic orbital electron populations 1.70088 1.07732 1.28034 1.51446 1.25963 0.95844 1.03391 0.94573 0.85310 0.78417 0.77899 0.78524 1.19553 1.20598 1.19083 1.21531 0.93751 0.91465 1.50700 0.91944 1.19240 0.90630 0.88738 0.93424 1.60611 1.20385 1.01092 1.49380 1.20783 0.93856 0.87610 1.00376 1.19769 1.00486 0.97959 0.93962 1.21019 0.95692 0.95221 0.97777 1.21354 1.02263 1.01235 0.97527 1.19111 0.90094 0.89030 0.94517 1.86081 1.56104 1.48740 1.33007 1.23241 0.97689 0.97127 0.84054 1.23157 0.84996 0.94019 0.95841 0.90211 1.23283 0.97698 1.01832 0.95141 1.23144 0.96290 0.99312 0.99836 1.23355 0.88684 0.95126 0.96782 1.88512 1.15150 1.62298 1.66795 1.20553 1.00830 0.99592 0.96982 1.20951 0.95131 0.94230 0.98194 0.92568 1.01847 0.97974 0.84911 0.91447 0.95218 0.84876 0.83198 0.88402 0.91318 0.87218 0.89326 0.88003 0.89384 0.90942 0.90954 0.84443 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.41 5.44 85.56 0.47 11.88 16 10 N -0.68 -30.85 6.48 -521.98 -3.38 -34.23 16 11 C 0.10 3.82 5.81 85.56 0.50 4.32 16 12 C -0.12 -3.86 5.39 -19.85 -0.11 -3.97 16 13 C -0.08 -2.16 9.69 22.25 0.22 -1.95 16 14 C -0.21 -5.00 9.04 22.37 0.20 -4.80 16 15 C 0.12 3.15 6.69 22.51 0.15 3.30 16 16 O -0.33 -8.21 10.14 -91.77 -0.93 -9.14 16 17 C 0.05 0.92 4.45 71.98 0.32 1.24 16 18 C 0.08 1.18 3.72 31.26 0.12 1.29 16 19 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.14 -1.12 6.58 32.09 0.21 -0.91 16 21 C -0.15 -1.05 7.02 31.89 0.22 -0.83 16 22 C 0.04 0.48 7.80 72.45 0.56 1.04 16 23 O -0.41 -8.56 11.04 -148.28 -1.64 -10.20 16 24 C -0.16 -4.51 9.99 22.37 0.22 -4.29 16 25 C -0.07 -2.01 9.69 22.25 0.22 -1.79 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H -0.04 -2.11 8.14 -2.39 -0.02 -2.13 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.33 14.44 8.71 -89.69 -0.78 13.66 16 30 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 31 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.15 2.70 6.30 -2.91 -0.02 2.68 16 34 H 0.10 1.19 7.66 -2.39 -0.02 1.17 16 35 H 0.07 1.18 7.66 -2.39 -0.02 1.17 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.63 8.06 -2.39 -0.02 0.61 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -70.92 357.87 0.57 -70.35 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.21 Total: 18.97 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.00 Total: -26.08 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -3.10 Total: -90.97 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -2.57 Total: -19.34 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.92 0.57 -70.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338395823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.806 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds