Wall clock time and date at job start Tue Mar 31 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46846 * 270.00183 * 3 2 1 5 5 H 1.48502 * 109.47152 * 30.00058 * 3 2 1 6 6 H 1.48494 * 109.47340 * 150.00107 * 3 2 1 7 7 C 1.37878 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99718 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.46815 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99915 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46965 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47105 * 65.00013 * 12 11 10 14 14 C 1.46905 * 110.99995 * 174.77823 * 13 12 11 15 15 H 1.08997 * 109.24975 * 34.91571 * 14 13 12 16 16 C 1.52728 * 109.21958 * 275.47440 * 14 13 12 17 17 C 1.53319 * 108.39561 * 188.62981 * 16 14 13 18 18 C 1.52730 * 108.38308 * 69.81369 * 17 16 14 19 19 C 1.50631 * 110.52611 * 308.68495 * 18 17 16 20 20 C 1.39405 * 117.75864 * 197.26410 * 19 18 17 21 21 O 1.35900 * 119.78154 * 1.08824 * 20 19 18 22 22 C 1.38428 * 120.42674 * 180.82178 * 20 19 18 23 23 C 1.38170 * 119.71301 * 0.21559 * 22 20 19 24 24 C 1.37966 * 119.83150 * 359.85776 * 23 22 20 25 25 C 1.37568 * 122.58526 * 18.35222 * 19 18 17 26 26 H 0.96994 * 120.00290 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47299 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47251 * 299.99787 * 9 7 2 29 29 H 1.08993 * 109.47171 * 60.00360 * 11 10 9 30 30 H 1.08991 * 109.47018 * 299.99503 * 11 10 9 31 31 H 1.09003 * 109.47068 * 305.00386 * 12 11 10 32 32 H 1.08999 * 109.47369 * 184.99986 * 12 11 10 33 33 H 1.00901 * 111.00183 * 298.72804 * 13 12 11 34 34 H 1.09003 * 109.67733 * 308.35504 * 16 14 13 35 35 H 1.09002 * 109.67832 * 68.86353 * 16 14 13 36 36 H 1.09001 * 109.68418 * 189.53940 * 17 16 14 37 37 H 1.09005 * 109.67743 * 310.09168 * 17 16 14 38 38 H 1.08998 * 109.25213 * 69.16922 * 18 17 16 39 39 H 1.08995 * 109.25389 * 188.60236 * 18 17 16 40 40 H 0.96691 * 114.00678 * 269.72808 * 21 20 19 41 41 H 1.08000 * 120.14410 * 180.23239 * 22 20 19 42 42 H 1.07996 * 120.08867 * 179.84421 * 23 22 20 43 43 H 1.07996 * 119.66779 * 180.10671 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 8 3.9880 -2.5411 -0.0022 11 6 5.4126 -2.6538 -0.0022 12 6 5.8072 -4.1321 -0.0028 13 7 5.3680 -4.7557 -1.2583 14 6 5.8378 -6.1446 -1.3488 15 1 5.8333 -6.5910 -0.3544 16 6 7.2619 -6.1587 -1.9006 17 6 7.6538 -7.6122 -2.1912 18 6 6.8395 -8.1006 -3.3874 19 6 5.3729 -7.8321 -3.1731 20 6 4.4628 -8.5250 -3.9698 21 8 4.9135 -9.4231 -4.8847 22 6 3.1026 -8.3082 -3.8312 23 6 2.6460 -7.3955 -2.8998 24 6 3.5474 -6.7089 -2.1126 25 6 4.9136 -6.9240 -2.2474 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8889 28 1 3.8745 -0.6798 -0.8911 29 1 5.8153 -2.1711 0.8881 30 1 5.8153 -2.1696 -0.8918 31 1 5.3313 -4.6355 0.8388 32 1 6.8900 -4.2192 0.0867 33 1 4.3648 -4.7063 -1.3550 34 1 7.3047 -5.5759 -2.8207 35 1 7.9448 -5.7338 -1.1649 36 1 8.7173 -7.6661 -2.4243 37 1 7.4363 -8.2319 -1.3213 38 1 7.1756 -7.5836 -4.2862 39 1 6.9917 -9.1727 -3.5121 40 1 5.0839 -9.0437 -5.7576 41 1 2.4013 -8.8503 -4.4482 42 1 1.5863 -7.2197 -2.7883 43 1 3.1875 -5.9974 -1.3843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339128803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:16 Heat of formation + Delta-G solvation = -73.648235 kcal Electronic energy + Delta-G solvation = -23006.170729 eV Core-core repulsion = 19629.821141 eV Total energy + Delta-G solvation = -3376.349588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -40.60077 -38.09095 -37.02500 -35.96497 -34.77922 -32.65452 -30.98167 -30.40552 -28.81495 -27.87467 -26.64645 -23.41018 -23.04683 -21.96623 -21.81303 -21.13227 -19.61693 -18.14633 -16.88924 -16.57004 -16.16452 -15.89023 -15.71357 -15.27002 -14.89598 -14.59119 -14.32673 -14.12856 -13.92927 -13.53735 -13.17742 -12.81062 -12.71659 -12.48187 -12.25217 -12.05559 -12.02168 -11.69806 -11.46013 -11.25764 -11.05212 -11.03885 -10.79056 -10.71961 -10.39902 -10.17497 -9.87642 -9.20282 -8.90712 -8.84804 -8.59261 -8.48222 -8.18245 -6.13064 -4.12124 1.15631 1.23655 3.24356 3.31248 3.32706 3.48131 4.05936 4.26736 4.34597 4.49616 4.52113 4.67167 4.85795 4.94912 5.00482 5.08473 5.18746 5.23108 5.31322 5.33776 5.41736 5.48935 5.62223 5.70733 5.71295 5.77095 5.85255 5.87642 5.90350 6.02902 6.08068 6.17309 6.25858 6.32218 6.42665 6.52123 6.60808 6.72206 6.99423 7.14716 7.49319 7.55359 7.59803 7.99796 8.64795 8.97198 9.46384 10.99921 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.003409 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.979590 B = 8211.717904 C = 9265.224036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.059 3.941 12 C 0.064 3.936 13 N -0.682 5.682 14 C 0.126 3.874 15 H 0.055 0.945 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.075 4.075 19 C -0.094 4.094 20 C 0.096 3.904 21 O -0.498 6.498 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.059 4.059 26 H 0.266 0.734 27 H 0.002 0.998 28 H -0.001 1.001 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.358 0.642 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 -16.597 -7.073 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.019 4.019 12 C -0.065 4.065 13 N -0.318 5.318 14 C 0.017 3.983 15 H 0.072 0.928 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.112 4.112 19 C -0.096 4.096 20 C 0.052 3.948 21 O -0.308 6.308 22 C -0.164 4.164 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.060 4.060 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.181 0.819 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.242 0.758 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.931 -16.756 -6.957 23.497 hybrid contribution -0.175 1.124 0.207 1.156 sum 14.755 -15.632 -6.751 22.531 Atomic orbital electron populations 1.69869 1.06063 1.27108 1.50355 1.24763 0.94799 0.98774 0.94611 0.86846 0.80325 0.83744 0.78805 1.19894 1.20812 1.19119 1.20881 0.88293 0.95260 1.51254 0.90047 1.20573 0.96067 0.79434 0.94337 1.87838 1.17703 1.29734 1.95095 1.22369 0.84850 0.95094 0.99560 1.22008 0.99674 0.94333 0.90481 1.60654 1.20329 1.14770 1.35998 1.20317 0.93717 0.88089 0.96184 0.92758 1.21572 0.94836 0.96072 1.02058 1.21561 0.99437 0.96621 0.98114 1.20329 0.90302 1.01738 0.98800 1.19818 0.95813 0.96563 0.97360 1.18405 0.91042 0.91932 0.93427 1.84785 1.87425 1.35257 1.23344 1.21333 0.94830 0.99511 1.00757 1.20984 1.00127 0.95578 0.95230 1.21273 0.92607 0.99897 1.00238 1.19525 0.93863 0.96104 0.96497 0.92363 0.98056 0.98305 0.94002 0.93365 0.94507 0.90430 0.81920 0.90616 0.91642 0.91256 0.91794 0.90819 0.90461 0.75809 0.85550 0.85237 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.34 9.99 -34.44 -0.34 -15.68 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.17 4.33 4.76 36.01 0.17 4.50 16 10 O -0.38 -8.74 9.94 -35.23 -0.35 -9.09 16 11 C 0.06 1.03 6.28 37.16 0.23 1.26 16 12 C 0.06 0.91 5.86 -3.82 -0.02 0.89 16 13 N -0.68 -9.90 6.26 -108.13 -0.68 -10.58 16 14 C 0.13 1.55 2.53 -69.03 -0.17 1.38 16 15 H 0.05 0.66 7.85 -51.93 -0.41 0.26 16 16 C -0.11 -1.11 5.38 -26.71 -0.14 -1.26 16 17 C -0.12 -1.05 5.98 -26.70 -0.16 -1.21 16 18 C -0.07 -0.70 5.28 -28.05 -0.15 -0.85 16 19 C -0.09 -1.11 5.75 -104.47 -0.60 -1.71 16 20 C 0.10 1.10 6.66 -39.08 -0.26 0.84 16 21 O -0.50 -4.77 12.53 -19.43 -0.24 -5.01 16 22 C -0.15 -1.66 9.98 -39.54 -0.39 -2.05 16 23 C -0.10 -1.23 10.04 -39.71 -0.40 -1.63 16 24 C -0.12 -1.62 8.85 -39.42 -0.35 -1.97 16 25 C -0.06 -0.76 5.55 -104.63 -0.58 -1.34 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 28 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.91 7.44 -51.93 -0.39 0.53 16 33 H 0.36 5.82 5.73 -39.29 -0.23 5.59 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.06 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 40 H 0.39 1.99 9.06 45.56 0.41 2.40 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.13 1.79 6.52 -52.49 -0.34 1.45 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.69 345.36 -9.13 -41.82 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.90 Total: 4.49 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.27 Total: -16.80 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.10 Total: -37.34 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.59 Total: -14.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.69 -9.13 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339128803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.830 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds