Wall clock time and date at job start Tue Mar 31 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46846 * 270.00183 * 3 2 1 5 5 H 1.48502 * 109.47152 * 30.00058 * 3 2 1 6 6 H 1.48494 * 109.47340 * 150.00107 * 3 2 1 7 7 C 1.37878 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99718 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.46815 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99915 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46965 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47105 * 65.00013 * 12 11 10 14 14 C 1.46905 * 110.99995 * 174.77823 * 13 12 11 15 15 H 1.08997 * 109.24975 * 34.91571 * 14 13 12 16 16 C 1.52728 * 109.21958 * 275.47440 * 14 13 12 17 17 C 1.53319 * 108.39561 * 188.62981 * 16 14 13 18 18 C 1.52730 * 108.38308 * 69.81369 * 17 16 14 19 19 C 1.50631 * 110.52611 * 308.68495 * 18 17 16 20 20 C 1.39405 * 117.75864 * 197.26410 * 19 18 17 21 21 O 1.35900 * 119.78154 * 1.08824 * 20 19 18 22 22 C 1.38428 * 120.42674 * 180.82178 * 20 19 18 23 23 C 1.38170 * 119.71301 * 0.21559 * 22 20 19 24 24 C 1.37966 * 119.83150 * 359.85776 * 23 22 20 25 25 C 1.37568 * 122.58526 * 18.35222 * 19 18 17 26 26 H 0.96994 * 120.00290 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47299 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47251 * 299.99787 * 9 7 2 29 29 H 1.08993 * 109.47171 * 60.00360 * 11 10 9 30 30 H 1.08991 * 109.47018 * 299.99503 * 11 10 9 31 31 H 1.09003 * 109.47068 * 305.00386 * 12 11 10 32 32 H 1.08999 * 109.47369 * 184.99986 * 12 11 10 33 33 H 1.00901 * 111.00183 * 298.72804 * 13 12 11 34 34 H 1.09003 * 109.67733 * 308.35504 * 16 14 13 35 35 H 1.09002 * 109.67832 * 68.86353 * 16 14 13 36 36 H 1.09001 * 109.68418 * 189.53940 * 17 16 14 37 37 H 1.09005 * 109.67743 * 310.09168 * 17 16 14 38 38 H 1.08998 * 109.25213 * 69.16922 * 18 17 16 39 39 H 1.08995 * 109.25389 * 188.60236 * 18 17 16 40 40 H 0.96691 * 114.00678 * 269.72808 * 21 20 19 41 41 H 1.08000 * 120.14410 * 180.23239 * 22 20 19 42 42 H 1.07996 * 120.08867 * 179.84421 * 23 22 20 43 43 H 1.07996 * 119.66779 * 180.10671 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 8 3.9880 -2.5411 -0.0022 11 6 5.4126 -2.6538 -0.0022 12 6 5.8072 -4.1321 -0.0028 13 7 5.3680 -4.7557 -1.2583 14 6 5.8378 -6.1446 -1.3488 15 1 5.8333 -6.5910 -0.3544 16 6 7.2619 -6.1587 -1.9006 17 6 7.6538 -7.6122 -2.1912 18 6 6.8395 -8.1006 -3.3874 19 6 5.3729 -7.8321 -3.1731 20 6 4.4628 -8.5250 -3.9698 21 8 4.9135 -9.4231 -4.8847 22 6 3.1026 -8.3082 -3.8312 23 6 2.6460 -7.3955 -2.8998 24 6 3.5474 -6.7089 -2.1126 25 6 4.9136 -6.9240 -2.2474 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8889 28 1 3.8745 -0.6798 -0.8911 29 1 5.8153 -2.1711 0.8881 30 1 5.8153 -2.1696 -0.8918 31 1 5.3313 -4.6355 0.8388 32 1 6.8900 -4.2192 0.0867 33 1 4.3648 -4.7063 -1.3550 34 1 7.3047 -5.5759 -2.8207 35 1 7.9448 -5.7338 -1.1649 36 1 8.7173 -7.6661 -2.4243 37 1 7.4363 -8.2319 -1.3213 38 1 7.1756 -7.5836 -4.2862 39 1 6.9917 -9.1727 -3.5121 40 1 5.0839 -9.0437 -5.7576 41 1 2.4013 -8.8503 -4.4482 42 1 1.5863 -7.2197 -2.7883 43 1 3.1875 -5.9974 -1.3843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339128803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:08 Heat of formation + Delta-G solvation = -97.115291 kcal Electronic energy + Delta-G solvation = -23007.188337 eV Core-core repulsion = 19629.821141 eV Total energy + Delta-G solvation = -3377.367196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.48567 -39.17074 -38.43525 -36.87486 -35.85545 -34.80910 -32.13357 -31.27037 -30.29553 -29.26599 -27.88394 -24.32862 -24.06038 -23.85282 -22.97029 -22.19042 -20.44717 -19.11804 -18.92742 -17.69997 -17.26092 -17.13916 -16.83531 -16.54773 -16.33939 -15.99921 -15.49028 -15.21064 -14.80957 -14.73537 -14.66783 -14.23990 -13.77649 -13.70248 -13.35116 -13.24937 -13.15361 -12.88753 -12.81000 -12.54048 -12.39986 -12.33247 -11.89601 -11.83915 -11.78636 -11.46156 -11.33664 -11.01097 -10.92894 -10.35774 -9.87090 -9.49484 -9.24424 -8.38017 -6.45799 0.23246 0.31438 1.33033 1.35826 1.46613 2.28788 2.57097 2.94822 3.09108 3.17523 3.29076 3.62526 3.71572 4.00149 4.08879 4.12878 4.18415 4.26040 4.35864 4.38158 4.46038 4.49138 4.53657 4.61432 4.67691 4.77699 4.89398 4.89675 4.97199 5.00315 5.01974 5.05785 5.11044 5.27324 5.41470 5.43196 5.43916 5.50687 5.60291 5.85523 5.92464 6.10118 6.32440 6.57940 6.74054 6.84314 7.18758 8.78996 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.003409 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.979590 B = 8211.717904 C = 9265.224036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.545 4.545 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.407 6.407 11 C 0.052 3.948 12 C 0.070 3.930 13 N -0.691 5.691 14 C 0.127 3.873 15 H 0.053 0.947 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.072 4.072 19 C -0.102 4.102 20 C 0.098 3.902 21 O -0.501 6.501 22 C -0.151 4.151 23 C -0.112 4.112 24 C -0.144 4.144 25 C -0.071 4.071 26 H 0.273 0.727 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.111 0.889 33 H 0.343 0.657 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.408 0.592 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.799 -16.327 -7.755 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.583 4.583 8 H 0.049 0.951 9 C 0.106 3.894 10 O -0.327 6.327 11 C -0.025 4.025 12 C -0.059 4.059 13 N -0.325 5.325 14 C 0.018 3.982 15 H 0.071 0.929 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.109 4.109 19 C -0.103 4.103 20 C 0.054 3.946 21 O -0.313 6.313 22 C -0.169 4.169 23 C -0.130 4.130 24 C -0.163 4.163 25 C -0.072 4.072 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.129 0.871 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.266 0.734 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.992 -16.514 -7.653 25.593 hybrid contribution -1.170 0.889 0.371 1.516 sum 16.822 -15.624 -7.283 24.086 Atomic orbital electron populations 1.70026 1.08235 1.28765 1.51100 1.25828 0.95789 1.03384 0.93468 0.85615 0.79461 0.77567 0.79742 1.18508 1.19831 1.16869 1.21161 0.90966 0.93824 1.52302 0.95117 1.20279 0.93208 0.80978 0.94926 1.87810 1.21338 1.28288 1.95267 1.22703 0.81783 0.97505 1.00544 1.22031 1.01401 0.92232 0.90217 1.60744 1.19300 1.16398 1.36022 1.20411 0.94821 0.86733 0.96249 0.92890 1.21547 0.93426 0.97263 1.01777 1.21554 1.00631 0.95220 0.97800 1.20380 0.88667 1.02265 0.99583 1.20117 0.97396 0.96053 0.96761 1.18493 0.91004 0.91514 0.93611 1.84731 1.87222 1.35032 1.24354 1.21553 0.95528 0.99289 1.00580 1.21136 1.00424 0.95938 0.95508 1.21275 0.93603 1.00553 1.00876 1.19650 0.93555 0.96801 0.97176 0.91812 0.97043 0.97369 0.92243 0.92925 0.95163 0.87113 0.83635 0.91488 0.90474 0.88947 0.91948 0.89631 0.89833 0.73352 0.83766 0.84646 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -33.32 9.99 25.60 0.26 -33.07 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 9 C 0.18 9.17 4.76 71.24 0.34 9.51 16 10 O -0.41 -18.77 9.94 -148.98 -1.48 -20.25 16 11 C 0.05 1.73 6.28 71.98 0.45 2.18 16 12 C 0.07 1.93 5.86 86.30 0.51 2.43 16 13 N -0.69 -20.11 6.26 -496.00 -3.11 -23.22 16 14 C 0.13 3.06 2.53 44.06 0.11 3.17 16 15 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 16 C -0.10 -1.91 5.38 30.61 0.16 -1.75 16 17 C -0.11 -1.71 5.98 30.61 0.18 -1.53 16 18 C -0.07 -1.19 5.28 29.74 0.16 -1.03 16 19 C -0.10 -2.29 5.75 -19.76 -0.11 -2.41 16 20 C 0.10 2.13 6.66 22.60 0.15 2.28 16 21 O -0.50 -8.49 12.53 -92.42 -1.16 -9.65 16 22 C -0.15 -3.38 9.98 22.30 0.22 -3.16 16 23 C -0.11 -2.85 10.04 22.19 0.22 -2.63 16 24 C -0.14 -4.10 8.85 22.38 0.20 -3.90 16 25 C -0.07 -1.84 5.55 -19.87 -0.11 -1.95 16 26 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 28 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 2.31 7.44 -2.39 -0.02 2.29 16 33 H 0.34 11.75 5.73 -89.69 -0.51 11.23 16 34 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.08 1.26 7.57 -2.39 -0.02 1.24 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.30 7.75 -2.39 -0.02 1.28 16 40 H 0.41 3.17 9.06 -74.06 -0.67 2.49 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.11 3.44 6.52 -2.91 -0.02 3.42 16 Total: -1.00 -72.59 345.36 -0.59 -73.17 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.22 Total: 24.25 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.20 Total: -30.59 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -2.81 Total: -82.39 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -2.64 Total: -29.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -72.59 -0.59 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339128803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.941 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds