Wall clock time and date at job start Tue Mar 31 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.46967 * 29.99868 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00296 * 3 2 1 7 7 C 1.37869 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00084 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46881 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 64.99925 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08994 * 108.64650 * 323.10381 * 14 13 12 16 16 C 1.52147 * 108.68511 * 205.00040 * 14 13 12 17 17 C 1.52884 * 110.80090 * 171.42802 * 16 14 13 18 18 C 1.51659 * 108.68609 * 83.33034 * 17 16 14 19 19 C 1.38028 * 120.01075 * 111.46714 * 18 17 16 20 20 C 1.38385 * 119.63920 * 179.21683 * 19 18 17 21 21 C 1.38285 * 120.07175 * 359.87213 * 20 19 18 22 22 C 1.38169 * 120.23113 * 0.36615 * 21 20 19 23 23 C 1.37942 * 119.44791 * 291.28035 * 18 17 16 24 24 O 1.36150 * 120.35737 * 2.67310 * 23 18 17 25 25 C 1.43136 * 115.60725 * 70.33560 * 24 23 18 26 26 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47388 * 60.00141 * 9 7 2 28 28 H 1.08996 * 109.47223 * 299.99819 * 9 7 2 29 29 H 1.08992 * 109.47198 * 60.00172 * 11 10 9 30 30 H 1.08997 * 109.46749 * 299.99934 * 11 10 9 31 31 H 1.09001 * 109.47002 * 184.99708 * 12 11 10 32 32 H 1.08993 * 109.46955 * 305.00145 * 12 11 10 33 33 H 1.00906 * 111.00348 * 56.04933 * 13 12 11 34 34 H 1.09000 * 109.21301 * 291.76731 * 16 14 13 35 35 H 1.08994 * 109.21140 * 51.08523 * 16 14 13 36 36 H 1.09000 * 109.59992 * 203.08611 * 17 16 14 37 37 H 1.08997 * 109.60077 * 323.41267 * 17 16 14 38 38 H 1.08000 * 120.18152 * 359.24168 * 19 18 17 39 39 H 1.08005 * 119.96579 * 179.88819 * 20 19 18 40 40 H 1.08001 * 119.88491 * 180.40001 * 21 20 19 41 41 H 1.08005 * 120.16424 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.18833 * 152.87577 * 25 24 23 43 43 H 1.09007 * 109.18916 * 33.62206 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0009 12 6 5.8069 -4.1324 -0.0002 13 7 5.3676 -4.7571 -1.2551 14 6 5.7307 -6.1801 -1.2900 15 1 6.7026 -6.3035 -0.8124 16 6 5.8421 -6.6191 -2.7425 17 6 6.4221 -8.0303 -2.8402 18 6 5.3005 -9.0314 -2.6410 19 6 4.8826 -9.8188 -3.6948 20 6 3.8695 -10.7412 -3.5003 21 6 3.2825 -10.8735 -2.2553 22 6 3.6983 -10.0813 -1.2024 23 6 4.7084 -9.1486 -1.4006 24 8 5.0887 -8.3354 -0.3770 25 6 4.7021 -6.9628 -0.5010 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 5.8151 -2.1705 0.8890 30 1 5.8151 -2.1706 -0.8909 31 1 6.8897 -4.2195 0.0894 32 1 5.3310 -4.6350 0.8418 33 1 5.7442 -4.2684 -2.0535 34 1 4.8520 -6.6059 -3.1982 35 1 6.4917 -5.9265 -3.2777 36 1 6.8703 -8.1742 -3.8233 37 1 7.1799 -8.1684 -2.0690 38 1 5.3440 -9.7158 -4.6659 39 1 3.5372 -11.3588 -4.3217 40 1 2.4965 -11.5988 -2.1052 41 1 3.2394 -10.1858 -0.2303 42 1 4.6056 -6.5266 0.4932 43 1 3.7404 -6.9061 -1.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339163447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:01 Heat of formation + Delta-G solvation = -58.335245 kcal Electronic energy + Delta-G solvation = -22795.617527 eV Core-core repulsion = 19419.931961 eV Total energy + Delta-G solvation = -3375.685567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69540 -38.08615 -37.15431 -36.19068 -34.03363 -32.60439 -31.10298 -30.50110 -28.63580 -27.45601 -26.66902 -24.58541 -22.82082 -21.86967 -21.70188 -20.91605 -20.64000 -18.10307 -16.93733 -16.65683 -15.97564 -15.87030 -15.43509 -15.29910 -14.99991 -14.85254 -14.24148 -14.17023 -13.96162 -13.56461 -13.51159 -13.01788 -12.74231 -12.72483 -12.45066 -12.21411 -12.05222 -11.83049 -11.52148 -11.25224 -10.95120 -10.87814 -10.77337 -10.60277 -10.46369 -10.13084 -9.84525 -9.14557 -9.02052 -8.81868 -8.67290 -8.43633 -8.31059 -6.08660 -4.07137 1.04690 1.14916 3.25056 3.25695 3.32579 3.33916 3.74129 4.22807 4.37420 4.43012 4.51475 4.65050 4.71817 4.78851 4.89732 5.03448 5.14242 5.22509 5.28166 5.29999 5.32436 5.41797 5.43142 5.49272 5.59135 5.69795 5.71805 5.81912 5.86184 5.92775 5.95021 6.04567 6.15278 6.18189 6.28659 6.36022 6.56170 6.62371 7.00121 7.03653 7.41930 7.44250 7.63101 8.07235 8.71121 9.04443 9.50933 11.04529 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002911 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.921619 B = 9615.792004 C =10168.717547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.365 6.365 11 C 0.061 3.939 12 C 0.063 3.937 13 N -0.671 5.671 14 C 0.063 3.937 15 H 0.045 0.955 16 C -0.119 4.119 17 C -0.075 4.075 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.131 4.131 23 C 0.102 3.898 24 O -0.330 6.330 25 C 0.075 3.925 26 H 0.266 0.734 27 H 0.000 1.000 28 H -0.003 1.003 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.345 0.655 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.561 -19.465 -6.311 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.284 6.284 11 C -0.018 4.018 12 C -0.066 4.066 13 N -0.305 5.305 14 C -0.047 4.047 15 H 0.063 0.937 16 C -0.157 4.157 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.149 4.149 23 C 0.058 3.942 24 O -0.246 6.246 25 C 0.000 4.000 26 H 0.076 0.924 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.728 -19.648 -5.901 24.685 hybrid contribution 1.391 1.404 -0.308 2.000 sum 15.119 -18.244 -6.210 24.494 Atomic orbital electron populations 1.69878 1.06043 1.26999 1.50573 1.24772 0.94797 0.98706 0.94772 0.86852 0.80322 0.83855 0.78699 1.19993 1.20833 1.19180 1.20897 0.88308 0.95298 1.50824 0.89911 1.20590 0.96220 0.79885 0.94082 1.88016 1.16709 1.28788 1.94885 1.22313 0.85829 0.94582 0.99032 1.22075 0.96566 0.94808 0.93142 1.60222 1.64903 1.00774 1.04643 1.21594 0.97669 0.89631 0.95817 0.93696 1.21541 1.02591 0.95738 0.95847 1.20700 0.95466 0.92465 1.02651 1.20258 0.98796 0.98959 0.93348 1.20950 0.97396 0.95669 0.98100 1.21181 0.97169 0.99050 0.97373 1.21036 0.99869 0.99219 0.92671 1.21349 0.95692 0.97863 1.00030 1.18534 0.94453 0.93737 0.87443 1.86273 1.77626 1.19410 1.41266 1.22537 0.97329 0.78094 1.01994 0.92422 0.98225 0.98582 0.93941 0.94580 0.94459 0.90144 0.83594 0.90587 0.91052 0.90586 0.90392 0.85688 0.85877 0.85657 0.85217 0.87992 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.53 9.99 -34.44 -0.34 -15.88 16 8 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.17 4.30 4.76 36.01 0.17 4.47 16 10 O -0.37 -8.52 10.27 -35.23 -0.36 -8.88 16 11 C 0.06 1.03 6.22 37.16 0.23 1.26 16 12 C 0.06 0.88 5.84 -3.82 -0.02 0.85 16 13 N -0.67 -9.23 6.22 -108.03 -0.67 -9.90 16 14 C 0.06 0.74 2.31 -68.94 -0.16 0.59 16 15 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 16 C -0.12 -1.22 4.99 -27.23 -0.14 -1.35 16 17 C -0.08 -0.70 5.55 -27.47 -0.15 -0.85 16 18 C -0.11 -1.23 5.07 -104.33 -0.53 -1.76 16 19 C -0.10 -0.96 9.69 -39.60 -0.38 -1.35 16 20 C -0.13 -1.15 10.05 -39.51 -0.40 -1.54 16 21 C -0.11 -1.03 10.03 -39.59 -0.40 -1.42 16 22 C -0.13 -1.45 10.01 -39.36 -0.39 -1.84 16 23 C 0.10 1.25 5.61 -39.44 -0.22 1.03 16 24 O -0.33 -4.38 9.99 -20.22 -0.20 -4.58 16 25 C 0.08 0.99 5.96 36.37 0.22 1.21 16 26 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 28 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.42 8.04 -51.93 -0.42 0.01 16 32 H 0.08 1.17 6.99 -51.93 -0.36 0.80 16 33 H 0.34 4.32 8.14 -39.29 -0.32 4.00 16 34 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 35 H 0.07 0.62 7.87 -51.93 -0.41 0.22 16 36 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 37 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 38 H 0.13 0.90 7.98 -52.49 -0.42 0.48 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.10 1.36 6.93 -51.93 -0.36 1.00 16 43 H 0.07 0.99 7.90 -51.92 -0.41 0.58 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -33.11 347.00 -9.31 -42.43 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.80 Total: 0.55 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.61 Total: -14.57 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.10 Total: -37.08 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.56 Total: -13.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.11 -9.31 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339163447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.910 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds