Wall clock time and date at job start Tue Mar 31 2020 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.46967 * 29.99868 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00296 * 3 2 1 7 7 C 1.37869 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99953 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00084 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46881 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 64.99925 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08994 * 108.64650 * 323.10381 * 14 13 12 16 16 C 1.52147 * 108.68511 * 205.00040 * 14 13 12 17 17 C 1.52884 * 110.80090 * 171.42802 * 16 14 13 18 18 C 1.51659 * 108.68609 * 83.33034 * 17 16 14 19 19 C 1.38028 * 120.01075 * 111.46714 * 18 17 16 20 20 C 1.38385 * 119.63920 * 179.21683 * 19 18 17 21 21 C 1.38285 * 120.07175 * 359.87213 * 20 19 18 22 22 C 1.38169 * 120.23113 * 0.36615 * 21 20 19 23 23 C 1.37942 * 119.44791 * 291.28035 * 18 17 16 24 24 O 1.36150 * 120.35737 * 2.67310 * 23 18 17 25 25 C 1.43136 * 115.60725 * 70.33560 * 24 23 18 26 26 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47388 * 60.00141 * 9 7 2 28 28 H 1.08996 * 109.47223 * 299.99819 * 9 7 2 29 29 H 1.08992 * 109.47198 * 60.00172 * 11 10 9 30 30 H 1.08997 * 109.46749 * 299.99934 * 11 10 9 31 31 H 1.09001 * 109.47002 * 184.99708 * 12 11 10 32 32 H 1.08993 * 109.46955 * 305.00145 * 12 11 10 33 33 H 1.00906 * 111.00348 * 56.04933 * 13 12 11 34 34 H 1.09000 * 109.21301 * 291.76731 * 16 14 13 35 35 H 1.08994 * 109.21140 * 51.08523 * 16 14 13 36 36 H 1.09000 * 109.59992 * 203.08611 * 17 16 14 37 37 H 1.08997 * 109.60077 * 323.41267 * 17 16 14 38 38 H 1.08000 * 120.18152 * 359.24168 * 19 18 17 39 39 H 1.08005 * 119.96579 * 179.88819 * 20 19 18 40 40 H 1.08001 * 119.88491 * 180.40001 * 21 20 19 41 41 H 1.08005 * 120.16424 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.18833 * 152.87577 * 25 24 23 43 43 H 1.09007 * 109.18916 * 33.62206 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0009 12 6 5.8069 -4.1324 -0.0002 13 7 5.3676 -4.7571 -1.2551 14 6 5.7307 -6.1801 -1.2900 15 1 6.7026 -6.3035 -0.8124 16 6 5.8421 -6.6191 -2.7425 17 6 6.4221 -8.0303 -2.8402 18 6 5.3005 -9.0314 -2.6410 19 6 4.8826 -9.8188 -3.6948 20 6 3.8695 -10.7412 -3.5003 21 6 3.2825 -10.8735 -2.2553 22 6 3.6983 -10.0813 -1.2024 23 6 4.7084 -9.1486 -1.4006 24 8 5.0887 -8.3354 -0.3770 25 6 4.7021 -6.9628 -0.5010 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 5.8151 -2.1705 0.8890 30 1 5.8151 -2.1706 -0.8909 31 1 6.8897 -4.2195 0.0894 32 1 5.3310 -4.6350 0.8418 33 1 5.7442 -4.2684 -2.0535 34 1 4.8520 -6.6059 -3.1982 35 1 6.4917 -5.9265 -3.2777 36 1 6.8703 -8.1742 -3.8233 37 1 7.1799 -8.1684 -2.0690 38 1 5.3440 -9.7158 -4.6659 39 1 3.5372 -11.3588 -4.3217 40 1 2.4965 -11.5988 -2.1052 41 1 3.2394 -10.1858 -0.2303 42 1 4.6056 -6.5266 0.4932 43 1 3.7404 -6.9061 -1.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339163447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:00 Heat of formation + Delta-G solvation = -81.178648 kcal Electronic energy + Delta-G solvation = -22796.608092 eV Core-core repulsion = 19419.931961 eV Total energy + Delta-G solvation = -3376.676131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55563 -39.15963 -38.44766 -37.36522 -35.11363 -34.65090 -32.20122 -31.28341 -30.27379 -28.79185 -27.82798 -25.49791 -23.94679 -23.60680 -22.90302 -21.81092 -21.53629 -19.05452 -18.99045 -17.69985 -17.47156 -16.77365 -16.68396 -16.52838 -16.30395 -15.82363 -15.70034 -15.39465 -14.91579 -14.72800 -14.48162 -14.37848 -14.14100 -14.01321 -13.60834 -13.23516 -13.10180 -12.97309 -12.79631 -12.69703 -12.43063 -12.13277 -11.94837 -11.79889 -11.63003 -11.55344 -11.30754 -11.08302 -10.91355 -10.29566 -9.78597 -9.49127 -9.32880 -8.36221 -6.43979 0.24294 0.38730 1.33177 1.36910 1.47748 2.30124 2.39266 2.86479 2.96264 3.12773 3.30370 3.62986 3.70517 3.89342 3.94725 4.16180 4.20596 4.25765 4.27925 4.36746 4.40801 4.50927 4.54768 4.57773 4.58029 4.62376 4.65685 4.70466 4.83876 4.94636 4.97285 5.00699 5.05034 5.11681 5.23294 5.41975 5.45933 5.54550 5.58679 5.79981 5.94559 6.04136 6.45312 6.51509 6.60777 6.82320 7.20850 8.81279 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002911 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.921619 B = 9615.792004 C =10168.717547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.395 6.395 11 C 0.051 3.949 12 C 0.069 3.931 13 N -0.693 5.693 14 C 0.071 3.929 15 H 0.055 0.945 16 C -0.113 4.113 17 C -0.070 4.070 18 C -0.125 4.125 19 C -0.107 4.107 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.151 4.151 23 C 0.069 3.931 24 O -0.340 6.340 25 C 0.079 3.921 26 H 0.273 0.727 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.352 0.648 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.229 -18.895 -7.757 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.582 4.582 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.315 6.315 11 C -0.026 4.026 12 C -0.060 4.060 13 N -0.328 5.328 14 C -0.039 4.039 15 H 0.073 0.927 16 C -0.151 4.151 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.132 4.132 22 C -0.169 4.169 23 C 0.025 3.975 24 O -0.256 6.256 25 C 0.004 3.996 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.415 -19.108 -7.351 26.241 hybrid contribution 0.474 1.048 0.127 1.157 sum 16.890 -18.060 -7.224 25.761 Atomic orbital electron populations 1.70045 1.08339 1.28745 1.51264 1.25887 0.95829 1.03532 0.93504 0.85562 0.79401 0.77283 0.79776 1.18348 1.19918 1.16791 1.21183 0.91192 0.93680 1.52110 0.95541 1.20285 0.93127 0.81426 0.94836 1.87972 1.20904 1.27460 1.95141 1.22693 0.82351 0.97053 1.00501 1.22019 0.98401 0.92663 0.92874 1.60145 1.65901 1.01828 1.04926 1.21526 0.97201 0.88277 0.96898 0.92704 1.21500 1.02158 0.96922 0.94538 1.20719 0.94850 0.91287 1.03949 1.20513 0.99227 0.99688 0.93117 1.21324 0.97354 0.95083 0.98706 1.21594 0.96426 0.98771 0.97842 1.21357 1.00228 0.99157 0.92479 1.21549 0.96025 0.98518 1.00834 1.18866 0.95986 0.94453 0.88146 1.86242 1.77804 1.19287 1.42280 1.22426 0.96943 0.78881 1.01391 0.91845 0.97217 0.97233 0.92421 0.92909 0.90860 0.91470 0.82719 0.92365 0.88989 0.88063 0.90667 0.83106 0.83021 0.83449 0.85378 0.89090 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.46 13.96 21.44 0.30 -60.16 16 2 C 0.01 0.60 5.47 84.65 0.46 1.07 16 3 Si 0.96 43.76 27.47 68.60 1.88 45.65 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.54 -33.88 9.99 25.60 0.26 -33.63 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.18 9.10 4.76 71.24 0.34 9.43 16 10 O -0.40 -18.54 10.27 -148.98 -1.53 -20.08 16 11 C 0.05 1.66 6.22 71.98 0.45 2.11 16 12 C 0.07 1.84 5.84 86.31 0.50 2.34 16 13 N -0.69 -18.65 6.22 -495.70 -3.08 -21.73 16 14 C 0.07 1.65 2.31 44.12 0.10 1.75 16 15 H 0.06 1.18 7.64 -2.39 -0.02 1.16 16 16 C -0.11 -2.19 4.99 30.27 0.15 -2.04 16 17 C -0.07 -1.20 5.55 30.12 0.17 -1.04 16 18 C -0.12 -2.62 5.07 -19.68 -0.10 -2.72 16 19 C -0.11 -1.79 9.69 22.26 0.22 -1.58 16 20 C -0.13 -2.02 10.05 22.32 0.22 -1.79 16 21 C -0.11 -2.04 10.03 22.26 0.22 -1.82 16 22 C -0.15 -3.46 10.01 22.41 0.22 -3.23 16 23 C 0.07 1.74 5.61 22.36 0.13 1.87 16 24 O -0.34 -9.49 9.99 -95.26 -0.95 -10.44 16 25 C 0.08 2.20 5.96 71.47 0.43 2.63 16 26 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 28 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 32 H 0.07 1.96 6.99 -2.39 -0.02 1.94 16 33 H 0.35 8.33 8.14 -89.69 -0.73 7.60 16 34 H 0.06 1.34 7.89 -2.39 -0.02 1.32 16 35 H 0.09 1.39 7.87 -2.39 -0.02 1.37 16 36 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 37 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 38 H 0.15 1.68 7.98 -2.91 -0.02 1.65 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.09 2.64 6.93 -2.39 -0.02 2.62 16 43 H 0.04 1.41 7.90 -2.38 -0.02 1.39 16 Total: -1.00 -75.17 347.00 0.59 -74.57 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.21 Total: 18.84 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.77 Total: -26.65 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.78 Total: -81.89 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -2.48 Total: -30.51 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -75.17 0.59 -74.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339163447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.606 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds