Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47068 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 120.00225 * 3 2 1 7 7 C 1.37874 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00589 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00160 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00180 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00082 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47310 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47523 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47460 * 179.97438 * 15 14 13 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47024 * 59.99985 * 9 7 2 27 27 H 1.09001 * 109.46842 * 300.00061 * 9 7 2 28 28 H 0.97005 * 119.99897 * 0.02562 * 10 9 7 29 29 H 1.08993 * 109.47228 * 60.00405 * 13 11 10 30 30 H 1.09004 * 109.47564 * 300.00176 * 13 11 10 31 31 H 1.08998 * 109.47484 * 59.99590 * 14 13 11 32 32 H 1.09001 * 109.46810 * 299.99854 * 14 13 11 33 33 H 1.09006 * 109.46948 * 59.99612 * 15 14 13 34 34 H 1.08998 * 109.47057 * 300.00511 * 15 14 13 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 6 1.9682 -7.3538 -0.0005 15 6 2.9624 -8.5167 -0.0004 16 8 2.2480 -9.7543 0.0003 17 6 3.0879 -10.9103 0.0010 18 6 2.2207 -12.1708 0.0011 19 6 3.1066 -13.3900 0.0012 20 6 3.5128 -13.9491 1.1984 21 6 4.3249 -15.0678 1.1985 22 6 4.7302 -15.6277 0.0014 23 6 4.3284 -15.0655 -1.1958 24 6 3.5125 -13.9496 -1.1959 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 3.1567 -3.4354 -0.0002 29 1 3.3604 -5.9709 0.8889 30 1 3.3592 -5.9711 -0.8911 31 1 1.3411 -7.4115 -0.8901 32 1 1.3420 -7.4117 0.8898 33 1 3.5892 -8.4589 0.8896 34 1 3.5891 -8.4590 -0.8904 35 1 3.7172 -10.9018 0.8909 36 1 3.7172 -10.9027 -0.8890 37 1 1.5918 -12.1792 -0.8892 38 1 1.5912 -12.1787 0.8909 39 1 3.1957 -13.5119 2.1337 40 1 4.6426 -15.5043 2.1338 41 1 5.3644 -16.5019 0.0015 42 1 4.6487 -15.5003 -2.1311 43 1 3.1945 -13.5132 -2.1313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340456364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = -87.759647 kcal Electronic energy + Delta-G solvation = -20998.049533 eV Core-core repulsion = 17621.088028 eV Total energy + Delta-G solvation = -3376.961504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73171 -38.92959 -38.05217 -34.41748 -34.04506 -32.95311 -32.27616 -31.27360 -29.12397 -27.77144 -26.04449 -23.73885 -22.95910 -22.77912 -21.56065 -21.03985 -19.56632 -17.42912 -17.06021 -16.60701 -16.48325 -15.65256 -15.61822 -15.39469 -15.05842 -14.96757 -14.57135 -14.11013 -13.90077 -13.69397 -13.36600 -13.14195 -12.73434 -12.70577 -11.97209 -11.94010 -11.88161 -11.72741 -11.52873 -11.39062 -11.26455 -11.00929 -10.96183 -10.86958 -10.72151 -10.30980 -9.73789 -9.40437 -9.30601 -9.11173 -9.02215 -8.72460 -7.86347 -6.15817 -4.23022 0.93949 1.01311 3.25115 3.25446 3.30294 3.31858 3.40587 3.53012 4.16803 4.38894 4.44501 4.54059 4.64961 4.76253 4.77831 4.90313 4.99686 5.10838 5.13256 5.15784 5.15829 5.19994 5.24642 5.42501 5.46635 5.52531 5.57323 5.64231 5.69860 5.76979 5.87801 6.07907 6.13127 6.22493 6.25766 6.40023 6.61766 7.07273 7.32306 7.45882 7.53237 7.67324 7.98185 8.64576 8.78884 9.12862 9.43726 10.94346 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.058560 B = 0.001657 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.028576 B =16898.139529 C =17045.169842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.556 6.556 13 C -0.138 4.138 14 C -0.102 4.102 15 C 0.064 3.936 16 O -0.387 6.387 17 C 0.069 3.931 18 C -0.081 4.081 19 C -0.081 4.081 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.390 0.610 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 -29.126 0.001 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.435 6.435 13 C -0.179 4.179 14 C -0.140 4.140 15 C -0.012 4.012 16 O -0.306 6.306 17 C -0.008 4.008 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.223 0.777 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.586 -29.124 0.001 30.988 hybrid contribution 1.287 1.042 0.001 1.656 sum 11.873 -28.082 0.002 30.489 Atomic orbital electron populations 1.69968 1.06112 1.27406 1.48786 1.24957 0.94918 0.99448 0.94696 0.86467 0.79403 0.82316 0.78662 1.20080 1.21056 1.20085 1.21202 0.93225 0.90520 1.53358 0.91958 1.19097 0.88369 0.82027 0.97731 1.46475 1.11071 1.06248 1.72450 1.20421 0.89491 0.84432 0.77495 1.90666 1.17033 1.84953 1.50889 1.21553 0.98728 0.93708 1.03887 1.21196 0.97585 0.90224 1.04957 1.22553 0.94813 0.83843 0.99989 1.87876 1.33880 1.13460 1.95433 1.22393 0.92890 0.85154 1.00332 1.20492 0.96943 0.89899 1.04511 1.19775 0.98285 0.96645 0.93362 1.21128 0.98125 0.96328 0.97715 1.21172 0.98080 0.96301 0.98183 1.21181 1.00302 1.00127 0.92664 1.21172 0.98061 0.96319 0.98183 1.21127 0.98093 0.96360 0.97716 0.92391 0.95552 0.95566 0.77725 0.89353 0.89352 0.90354 0.90363 0.93359 0.93353 0.93310 0.93319 0.89944 0.89941 0.85885 0.86015 0.86144 0.86014 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 10 N -0.71 -15.07 5.55 -61.48 -0.34 -15.41 16 11 C 0.50 9.89 7.83 -10.99 -0.09 9.80 16 12 O -0.56 -13.56 15.98 5.56 0.09 -13.47 16 13 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 14 C -0.10 -1.39 4.87 -26.73 -0.13 -1.52 16 15 C 0.06 0.71 5.94 37.16 0.22 0.93 16 16 O -0.39 -4.67 10.34 -35.23 -0.36 -5.03 16 17 C 0.07 0.63 5.92 37.15 0.22 0.85 16 18 C -0.08 -0.67 5.71 -27.88 -0.16 -0.83 16 19 C -0.08 -0.64 5.13 -104.62 -0.54 -1.18 16 20 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 21 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 22 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -33.33 368.86 -9.43 -42.76 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.05 Total: 2.22 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.04 Total: -6.97 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.40 Total: -40.92 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.28 Total: -18.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.33 -9.43 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds