Wall clock time and date at job start Tue Mar 31 2020 07:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47068 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 120.00225 * 3 2 1 7 7 C 1.37874 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00589 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00160 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00180 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00082 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47310 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47523 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47460 * 179.97438 * 15 14 13 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47024 * 59.99985 * 9 7 2 27 27 H 1.09001 * 109.46842 * 300.00061 * 9 7 2 28 28 H 0.97005 * 119.99897 * 0.02562 * 10 9 7 29 29 H 1.08993 * 109.47228 * 60.00405 * 13 11 10 30 30 H 1.09004 * 109.47564 * 300.00176 * 13 11 10 31 31 H 1.08998 * 109.47484 * 59.99590 * 14 13 11 32 32 H 1.09001 * 109.46810 * 299.99854 * 14 13 11 33 33 H 1.09006 * 109.46948 * 59.99612 * 15 14 13 34 34 H 1.08998 * 109.47057 * 300.00511 * 15 14 13 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 6 1.9682 -7.3538 -0.0005 15 6 2.9624 -8.5167 -0.0004 16 8 2.2480 -9.7543 0.0003 17 6 3.0879 -10.9103 0.0010 18 6 2.2207 -12.1708 0.0011 19 6 3.1066 -13.3900 0.0012 20 6 3.5128 -13.9491 1.1984 21 6 4.3249 -15.0678 1.1985 22 6 4.7302 -15.6277 0.0014 23 6 4.3284 -15.0655 -1.1958 24 6 3.5125 -13.9496 -1.1959 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 3.1567 -3.4354 -0.0002 29 1 3.3604 -5.9709 0.8889 30 1 3.3592 -5.9711 -0.8911 31 1 1.3411 -7.4115 -0.8901 32 1 1.3420 -7.4117 0.8898 33 1 3.5892 -8.4589 0.8896 34 1 3.5891 -8.4590 -0.8904 35 1 3.7172 -10.9018 0.8909 36 1 3.7172 -10.9027 -0.8890 37 1 1.5918 -12.1792 -0.8892 38 1 1.5912 -12.1787 0.8909 39 1 3.1957 -13.5119 2.1337 40 1 4.6426 -15.5043 2.1338 41 1 5.3644 -16.5019 0.0015 42 1 4.6487 -15.5003 -2.1311 43 1 3.1945 -13.5132 -2.1313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340456364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:06 Heat of formation + Delta-G solvation = -108.913671 kcal Electronic energy + Delta-G solvation = -20998.966840 eV Core-core repulsion = 17621.088028 eV Total energy + Delta-G solvation = -3377.878812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.57693 -40.24745 -38.92688 -36.19817 -35.07705 -34.35074 -33.82366 -31.76570 -30.08250 -29.30190 -27.38621 -24.70812 -24.31258 -23.45654 -22.71090 -21.74585 -21.21110 -18.98380 -17.92409 -17.48310 -17.45218 -17.21272 -16.95116 -16.59658 -15.99929 -15.92969 -15.84309 -15.43685 -15.02327 -14.49135 -14.27755 -14.03010 -13.98554 -13.92166 -13.60932 -13.36020 -13.12008 -12.78800 -12.67841 -12.53660 -12.42449 -12.23011 -11.98476 -11.89866 -11.85784 -11.68063 -11.50946 -10.79161 -10.76289 -10.53326 -9.81960 -9.81598 -9.63551 -8.28854 -6.46071 0.41671 0.50425 1.43438 1.47766 1.56047 1.79724 2.29717 2.45441 2.78812 2.99477 3.05828 3.85682 3.89950 3.93651 4.02792 4.11607 4.20099 4.20591 4.31431 4.38223 4.47381 4.50603 4.55056 4.56342 4.63720 4.65435 4.73468 4.93997 4.97669 5.13205 5.14938 5.18920 5.19141 5.24220 5.30341 5.49558 5.58295 5.63902 5.70981 5.71782 5.85116 6.12806 6.29185 6.65262 6.92951 7.23736 7.52860 8.83194 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.058560 B = 0.001657 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.028576 B =16898.139529 C =17045.169842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.263 3.737 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.609 6.609 13 C -0.120 4.120 14 C -0.099 4.099 15 C 0.069 3.931 16 O -0.414 6.414 17 C 0.069 3.931 18 C -0.077 4.077 19 C -0.092 4.092 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.015 1.015 28 H 0.410 0.590 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.298 -29.705 0.001 33.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.140 3.860 10 N -0.358 5.358 11 C 0.278 3.722 12 O -0.491 6.491 13 C -0.159 4.159 14 C -0.138 4.138 15 C -0.007 4.007 16 O -0.334 6.334 17 C -0.007 4.007 18 C -0.115 4.115 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.246 0.754 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.112 -29.737 0.000 32.916 hybrid contribution 0.157 1.114 0.002 1.124 sum 14.268 -28.624 0.002 31.983 Atomic orbital electron populations 1.70142 1.08356 1.28629 1.49919 1.26103 0.95778 1.04025 0.93807 0.85178 0.77865 0.76452 0.79528 1.18586 1.21172 1.18596 1.21617 0.94386 0.90566 1.53010 0.89619 1.18538 0.88854 0.84626 0.93949 1.46217 1.11212 1.05594 1.72798 1.21643 0.89977 0.85261 0.75300 1.90646 1.19985 1.85681 1.52811 1.21525 0.97200 0.89948 1.07255 1.21126 0.97991 0.91922 1.02729 1.22503 0.93832 0.82382 1.01957 1.87841 1.35397 1.14478 1.95666 1.22502 0.92809 0.84319 1.01075 1.20436 0.96911 0.90033 1.04078 1.19798 0.98769 0.96751 0.93901 1.21318 0.98506 0.96839 0.97898 1.21454 0.97754 0.96070 0.99207 1.21504 1.00245 1.00646 0.92487 1.21455 0.97736 0.96088 0.99206 1.21316 0.98476 0.96870 0.97899 0.92273 0.99653 0.99668 0.75370 0.85755 0.85757 0.92716 0.92725 0.91301 0.91293 0.92480 0.92489 0.90390 0.90388 0.85224 0.84292 0.84172 0.84291 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.56 -30.50 9.28 25.60 0.24 -30.27 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.26 14.68 5.43 85.63 0.46 15.14 16 10 N -0.71 -29.82 5.55 -466.82 -2.59 -32.41 16 11 C 0.49 19.53 7.83 87.66 0.69 20.22 16 12 O -0.61 -31.02 15.98 -3.03 -0.05 -31.07 16 13 C -0.12 -2.93 5.70 29.85 0.17 -2.76 16 14 C -0.10 -2.63 4.87 30.59 0.15 -2.48 16 15 C 0.07 1.35 5.94 71.98 0.43 1.78 16 16 O -0.41 -9.56 10.34 -148.98 -1.54 -11.10 16 17 C 0.07 1.18 5.92 71.98 0.43 1.60 16 18 C -0.08 -1.25 5.71 29.85 0.17 -1.08 16 19 C -0.09 -1.40 5.13 -19.86 -0.10 -1.50 16 20 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 21 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 22 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.41 13.82 8.32 -92.70 -0.77 13.05 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 38 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 39 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -76.18 368.86 2.53 -73.65 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.21 Total: 18.89 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 4.20 Total: -5.78 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.30 Total: -88.91 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.59 Total: -42.16 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -76.18 2.53 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.267 kcal (2) G-P(sol) polarization free energy of solvation -76.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds