Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 C 1.52999 * 109.47497 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.46857 * 59.99924 * 4 2 1 6 6 H 1.08000 * 119.99909 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99962 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47290 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47112 * 119.99898 * 9 7 5 12 12 H 1.48507 * 109.46753 * 239.99947 * 9 7 5 13 13 C 1.53000 * 109.47171 * 119.99575 * 2 1 3 14 14 N 1.46493 * 109.47436 * 300.00503 * 13 2 1 15 15 C 1.32149 * 120.00379 * 119.99565 * 14 13 2 16 16 N 1.34334 * 118.20120 * 179.97438 * 15 14 13 17 17 C 1.31471 * 121.01662 * 180.02562 * 16 15 14 18 18 N 1.37144 * 135.55623 * 179.97438 * 17 16 15 19 19 H 0.97000 * 125.93579 * 359.97438 * 18 17 16 20 20 N 1.40084 * 108.11897 * 180.02562 * 18 17 16 21 21 H 0.96996 * 124.93680 * 180.02562 * 20 18 17 22 22 C 1.34563 * 110.12126 * 359.97438 * 20 18 17 23 23 C 1.37935 * 108.82650 * 0.02562 * 22 20 18 24 24 C 1.46195 * 135.50022 * 179.97438 * 23 22 20 25 25 O 1.35171 * 121.11895 * 359.97438 * 24 23 22 26 26 N 1.32179 * 117.75287 * 180.24843 * 24 23 22 27 27 H 1.08998 * 109.47567 * 299.99761 * 1 2 3 28 28 H 1.08998 * 109.47346 * 60.00113 * 1 2 3 29 29 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47133 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46950 * 300.00129 * 3 2 1 32 32 H 1.08998 * 109.46736 * 59.99730 * 3 2 1 33 33 H 1.08999 * 109.47006 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46987 * 300.00466 * 4 2 1 35 35 H 0.96998 * 119.99752 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47348 * 180.02562 * 13 2 1 37 37 H 1.09004 * 109.46692 * 60.00210 * 13 2 1 38 38 H 1.08003 * 125.58705 * 180.02562 * 22 20 18 39 39 H 0.96700 * 114.00353 * 89.99961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6257 -1.5520 -3.8525 9 14 1.2483 0.3988 -5.2571 10 1 0.4237 1.5657 -4.8530 11 1 2.4036 0.8646 -6.0655 12 1 0.4226 -0.5341 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 0.7918 -0.6728 3.3153 16 7 0.3646 -0.0048 4.3996 17 6 -0.3934 -0.5898 5.3006 18 7 -0.9810 -0.2116 6.4806 19 1 -0.9211 0.6653 6.8909 20 7 -1.6817 -1.3121 6.9908 21 1 -2.1882 -1.3132 7.8180 22 6 -1.5509 -2.3670 6.1658 23 6 -0.7652 -1.9989 5.0936 24 6 -0.2645 -2.6627 3.8911 25 8 -0.5622 -3.9555 3.6315 26 7 0.4934 -1.9577 3.0691 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2493 34 1 1.6767 -1.7489 -1.2492 35 1 2.8601 -1.8834 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 -1.9893 -3.3423 6.3182 39 1 -1.3705 -4.0770 3.1149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340935513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = 121.985418 kcal Electronic energy + Delta-G solvation = -22904.512446 eV Core-core repulsion = 19465.398578 eV Total energy + Delta-G solvation = -3439.113868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.87040 -39.18624 -37.61888 -36.53691 -33.62803 -32.84666 -31.91251 -31.54175 -29.87196 -26.77980 -26.04116 -25.62677 -24.13019 -23.07933 -22.30945 -21.45298 -20.23013 -18.57062 -17.92983 -17.05040 -16.40819 -16.25054 -15.97044 -15.76956 -15.24341 -14.63300 -14.42109 -14.12878 -13.77955 -13.14095 -12.88594 -12.40679 -12.08908 -11.80349 -11.65486 -11.45991 -10.87248 -10.72646 -10.60371 -10.55633 -10.31849 -10.21340 -9.96306 -9.81520 -9.50572 -9.40252 -9.22420 -8.82431 -8.64350 -8.22437 -8.14734 -6.90601 -5.79181 -3.78210 0.20902 0.89841 1.78297 1.97471 2.96929 3.43442 3.50303 3.55418 3.59082 3.87309 4.20161 4.36228 4.46518 4.63046 4.85231 4.92421 5.55960 5.58172 5.79650 6.03978 6.18138 6.24497 6.36301 6.61613 6.79622 6.81148 6.87538 6.93493 7.01417 7.09822 7.12961 7.32911 7.46588 7.48603 7.53888 7.63612 7.93599 8.10887 8.23178 8.36658 8.68714 8.99706 9.27575 9.83125 11.32601 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003386 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.459483 B = 8268.231229 C = 8650.661115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.117 4.117 4 C 0.035 3.965 5 C -0.500 4.500 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.058 3.942 14 N -0.484 5.484 15 C 0.483 3.517 16 N -0.561 5.561 17 C 0.451 3.549 18 N -0.490 5.490 19 H 0.455 0.545 20 N -0.460 5.460 21 H 0.454 0.546 22 C 0.230 3.770 23 C -0.357 4.357 24 C 0.456 3.544 25 O -0.477 6.477 26 N -0.551 5.551 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.257 0.743 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.211 0.789 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -3.975 28.605 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.003 4.003 5 C -0.539 4.539 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.073 4.073 14 N -0.206 5.206 15 C 0.114 3.886 16 N -0.295 5.295 17 C 0.178 3.822 18 N -0.226 5.226 19 H 0.304 0.696 20 N -0.175 5.175 21 H 0.301 0.699 22 C 0.083 3.917 23 C -0.378 4.378 24 C 0.231 3.769 25 O -0.284 6.284 26 N -0.279 5.279 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.688 -2.449 27.675 30.543 hybrid contribution -1.629 -0.490 -0.075 1.703 sum -14.316 -2.939 27.600 31.231 Atomic orbital electron populations 1.21635 0.96155 0.99952 0.99701 1.20592 0.94759 0.95744 0.93772 1.21621 0.99596 0.96220 1.00040 1.19134 0.96048 0.95096 0.90025 1.21321 1.30256 1.11670 0.90649 0.92323 1.25016 0.95598 0.95187 0.98919 1.69993 1.37661 1.23310 1.22920 0.86622 0.78552 0.79728 0.83628 1.19833 1.21226 1.21280 1.22235 0.98691 0.97713 0.88681 1.73109 1.10472 1.33367 1.03645 1.19801 0.95674 0.82038 0.91130 1.67133 1.20508 1.37441 1.04399 1.19072 0.89449 0.87794 0.85845 1.42989 1.50942 1.07566 1.21090 0.69605 1.43339 1.47255 1.03147 1.23724 0.69879 1.22545 0.91222 0.91010 0.86941 1.21140 1.15660 0.98151 1.02860 1.19899 0.88263 0.82941 0.85789 1.84572 1.48983 1.19182 1.75628 1.68880 1.16868 1.09663 1.32499 0.95283 0.92419 0.94399 0.94258 0.92846 0.93948 0.96701 0.96736 0.93378 0.91244 0.92058 0.77294 0.73228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.06 37.15 0.30 -2.48 16 2 C -0.05 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.12 -2.80 8.06 37.16 0.30 -2.50 16 4 C 0.03 0.99 4.04 -27.88 -0.11 0.87 16 5 C -0.50 -14.98 7.65 -34.44 -0.26 -15.25 16 6 H 0.06 1.72 5.68 -52.49 -0.30 1.43 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -28.52 13.29 55.43 0.74 -27.78 16 9 Si 0.89 22.92 29.54 -169.99 -5.02 17.90 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.06 1.36 5.21 -4.05 -0.02 1.34 16 14 N -0.48 -11.03 9.15 -63.08 -0.58 -11.60 16 15 C 0.48 9.79 8.27 -326.72 -2.70 7.09 16 16 N -0.56 -9.80 10.47 -12.40 -0.13 -9.93 16 17 C 0.45 5.29 8.75 -154.29 -1.35 3.94 16 18 N -0.49 -2.65 7.44 32.35 0.24 -2.41 16 19 H 0.45 1.33 8.96 -182.61 -1.64 -0.30 16 20 N -0.46 -0.50 7.20 30.88 0.22 -0.28 16 21 H 0.45 -1.61 8.96 -182.61 -1.64 -3.25 16 22 C 0.23 0.60 12.02 -16.47 -0.20 0.40 16 23 C -0.36 -3.37 6.54 -103.18 -0.67 -4.04 16 24 C 0.46 6.01 8.12 -14.21 -0.12 5.89 16 25 O -0.48 -4.71 13.60 -17.21 -0.23 -4.95 16 26 N -0.55 -10.24 8.57 -13.01 -0.11 -10.35 16 27 H 0.03 0.66 7.60 -51.93 -0.39 0.26 16 28 H 0.06 1.40 6.62 -51.93 -0.34 1.05 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 1.30 6.62 -51.93 -0.34 0.95 16 32 H 0.04 0.97 7.60 -51.93 -0.39 0.57 16 33 H 0.01 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.06 1.48 6.57 -51.93 -0.34 1.14 16 38 H 0.21 -0.50 8.06 -52.48 -0.42 -0.92 16 39 H 0.41 1.98 9.06 45.56 0.41 2.39 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -44.84 328.11 -11.61 -56.45 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -6.65 Total: -7.48 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -5.03 Total: -4.51 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.38 Total: -62.35 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.23 Total: -4.95 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -44.84 -11.61 -56.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340935513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.430 kcal (2) G-P(sol) polarization free energy of solvation -44.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds