Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 C 1.52999 * 109.47497 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.46857 * 59.99924 * 4 2 1 6 6 H 1.08000 * 119.99909 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99962 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99865 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47290 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47112 * 119.99898 * 9 7 5 12 12 H 1.48507 * 109.46753 * 239.99947 * 9 7 5 13 13 C 1.53000 * 109.47171 * 119.99575 * 2 1 3 14 14 N 1.46493 * 109.47436 * 300.00503 * 13 2 1 15 15 C 1.32149 * 120.00379 * 119.99565 * 14 13 2 16 16 N 1.34334 * 118.20120 * 179.97438 * 15 14 13 17 17 C 1.31471 * 121.01662 * 180.02562 * 16 15 14 18 18 N 1.37144 * 135.55623 * 179.97438 * 17 16 15 19 19 H 0.97000 * 125.93579 * 359.97438 * 18 17 16 20 20 N 1.40084 * 108.11897 * 180.02562 * 18 17 16 21 21 H 0.96996 * 124.93680 * 180.02562 * 20 18 17 22 22 C 1.34563 * 110.12126 * 359.97438 * 20 18 17 23 23 C 1.37935 * 108.82650 * 0.02562 * 22 20 18 24 24 C 1.46195 * 135.50022 * 179.97438 * 23 22 20 25 25 O 1.35171 * 121.11895 * 359.97438 * 24 23 22 26 26 N 1.32179 * 117.75287 * 180.24843 * 24 23 22 27 27 H 1.08998 * 109.47567 * 299.99761 * 1 2 3 28 28 H 1.08998 * 109.47346 * 60.00113 * 1 2 3 29 29 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47133 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46950 * 300.00129 * 3 2 1 32 32 H 1.08998 * 109.46736 * 59.99730 * 3 2 1 33 33 H 1.08999 * 109.47006 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46987 * 300.00466 * 4 2 1 35 35 H 0.96998 * 119.99752 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47348 * 180.02562 * 13 2 1 37 37 H 1.09004 * 109.46692 * 60.00210 * 13 2 1 38 38 H 1.08003 * 125.58705 * 180.02562 * 22 20 18 39 39 H 0.96700 * 114.00353 * 89.99961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6257 -1.5520 -3.8525 9 14 1.2483 0.3988 -5.2571 10 1 0.4237 1.5657 -4.8530 11 1 2.4036 0.8646 -6.0655 12 1 0.4226 -0.5341 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 0.7918 -0.6728 3.3153 16 7 0.3646 -0.0048 4.3996 17 6 -0.3934 -0.5898 5.3006 18 7 -0.9810 -0.2116 6.4806 19 1 -0.9211 0.6653 6.8909 20 7 -1.6817 -1.3121 6.9908 21 1 -2.1882 -1.3132 7.8180 22 6 -1.5509 -2.3670 6.1658 23 6 -0.7652 -1.9989 5.0936 24 6 -0.2645 -2.6627 3.8911 25 8 -0.5622 -3.9555 3.6315 26 7 0.4934 -1.9577 3.0691 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2493 34 1 1.6767 -1.7489 -1.2492 35 1 2.8601 -1.8834 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 -1.9893 -3.3423 6.3182 39 1 -1.3705 -4.0770 3.1149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340935513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = 82.668609 kcal Electronic energy + Delta-G solvation = -22906.217351 eV Core-core repulsion = 19465.398578 eV Total energy + Delta-G solvation = -3440.818773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = -0.62 seconds Orbital eigenvalues (eV) -42.61854 -40.16987 -38.83889 -38.07257 -35.00941 -34.21382 -33.48822 -32.39394 -30.86301 -28.97067 -27.95301 -27.23163 -25.17431 -24.85298 -23.00959 -22.68819 -20.95371 -19.61688 -19.41890 -18.40296 -18.21266 -17.23942 -16.96701 -16.63449 -16.43822 -16.07781 -15.58587 -15.41299 -15.08592 -14.99884 -14.37201 -14.28908 -13.92595 -13.55479 -12.94513 -12.84242 -12.67543 -12.56219 -12.43627 -12.31716 -12.23165 -11.96758 -11.55395 -11.30317 -11.00955 -10.97050 -10.61857 -10.50445 -10.37790 -10.31204 -9.49325 -8.15648 -8.04864 -6.20481 -0.45224 0.36277 0.82876 1.18396 1.39679 1.41559 1.55155 2.27116 2.45354 2.76566 3.15057 3.19812 3.20464 3.45380 3.97216 4.07517 4.24473 4.31269 4.34746 4.40550 4.75227 4.86906 4.95895 4.97893 5.07827 5.11554 5.13392 5.24077 5.42587 5.47213 5.50965 5.51831 5.66576 5.79533 5.87275 5.91499 6.25548 6.36233 6.61677 6.76112 6.92362 7.26430 7.45900 7.88442 9.01399 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003386 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.459483 B = 8268.231229 C = 8650.661115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.049 4.049 3 C -0.101 4.101 4 C 0.047 3.953 5 C -0.516 4.516 6 H 0.063 0.937 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.088 3.912 14 N -0.581 5.581 15 C 0.518 3.482 16 N -0.625 5.625 17 C 0.444 3.556 18 N -0.472 5.472 19 H 0.469 0.531 20 N -0.402 5.402 21 H 0.486 0.514 22 C 0.319 3.681 23 C -0.416 4.416 24 C 0.484 3.516 25 O -0.477 6.477 26 N -0.639 5.639 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.050 0.950 33 H -0.019 1.019 34 H -0.018 1.018 35 H 0.261 0.739 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.284 0.716 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 -4.891 32.976 38.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.158 4.158 4 C 0.010 3.990 5 C -0.554 4.554 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.202 1.202 13 C -0.044 4.044 14 N -0.310 5.310 15 C 0.149 3.851 16 N -0.364 5.364 17 C 0.175 3.825 18 N -0.206 5.206 19 H 0.322 0.678 20 N -0.115 5.115 21 H 0.341 0.659 22 C 0.164 3.836 23 C -0.438 4.438 24 C 0.266 3.734 25 O -0.288 6.288 26 N -0.373 5.373 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.299 0.701 39 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -17.475 -3.360 32.281 36.861 hybrid contribution -0.685 -0.551 -0.628 1.080 sum -18.160 -3.911 31.653 36.701 Atomic orbital electron populations 1.21358 0.95205 0.99203 0.99265 1.20484 0.95467 0.95896 0.93078 1.21433 0.98909 0.95661 0.99811 1.18942 0.93789 0.93856 0.92439 1.21591 1.30479 1.11915 0.91382 0.91843 1.26013 0.95587 0.95947 1.02698 1.70151 1.38783 1.24936 1.24083 0.85392 0.78199 0.78690 0.78738 1.18629 1.20429 1.20208 1.21582 0.96570 0.96281 0.89960 1.73051 1.18776 1.33613 1.05588 1.19938 0.92465 0.82356 0.90327 1.67024 1.24696 1.38748 1.05913 1.19411 0.87752 0.89213 0.86118 1.43248 1.48973 1.09247 1.19110 0.67832 1.43906 1.42946 1.01179 1.23439 0.65893 1.23711 0.84993 0.92456 0.82478 1.20959 1.20608 0.97104 1.05093 1.20319 0.84635 0.82882 0.85577 1.84510 1.50660 1.17435 1.76165 1.68834 1.22213 1.10217 1.36033 0.94641 0.93285 0.95287 0.95102 0.93585 0.93116 1.00022 0.99977 0.93001 0.94606 0.94379 0.70071 0.70402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.74 8.06 71.98 0.58 -4.16 16 2 C -0.05 -2.65 0.60 -52.18 -0.03 -2.68 16 3 C -0.10 -5.22 8.06 71.98 0.58 -4.64 16 4 C 0.05 2.96 4.04 29.85 0.12 3.08 16 5 C -0.52 -32.51 7.65 25.60 0.20 -32.32 16 6 H 0.06 3.87 5.68 -2.91 -0.02 3.86 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 8 N -0.94 -62.20 13.29 21.45 0.28 -61.92 16 9 Si 0.97 48.24 29.54 68.60 2.03 50.27 16 10 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.09 4.71 5.21 86.38 0.45 5.16 16 14 N -0.58 -29.46 9.15 -353.50 -3.24 -32.70 16 15 C 0.52 22.73 8.27 262.85 2.17 24.90 16 16 N -0.63 -22.69 10.47 -193.15 -2.02 -24.72 16 17 C 0.44 9.40 8.75 136.10 1.19 10.59 16 18 N -0.47 -2.59 7.44 -51.56 -0.38 -2.98 16 19 H 0.47 0.49 8.96 -213.33 -1.91 -1.42 16 20 N -0.40 2.63 7.20 -56.21 -0.40 2.22 16 21 H 0.49 -8.40 8.96 -213.33 -1.91 -10.31 16 22 C 0.32 -1.15 12.02 84.20 1.01 -0.14 16 23 C -0.42 -6.16 6.54 -18.93 -0.12 -6.28 16 24 C 0.48 12.32 8.12 86.71 0.70 13.02 16 25 O -0.48 -8.40 13.60 -84.50 -1.15 -9.55 16 26 N -0.64 -25.49 8.57 -308.25 -2.64 -28.13 16 27 H 0.03 1.73 7.60 -2.39 -0.02 1.71 16 28 H 0.05 2.49 6.62 -2.39 -0.02 2.48 16 29 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 2.36 6.62 -2.39 -0.02 2.35 16 32 H 0.05 2.51 7.60 -2.39 -0.02 2.49 16 33 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 34 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 35 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 2.10 6.57 -2.38 -0.02 2.09 16 38 H 0.28 -4.79 8.06 -2.91 -0.02 -4.81 16 39 H 0.43 3.09 9.06 -74.06 -0.67 2.41 16 Total: -1.00 -115.90 328.11 -3.58 -119.48 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -3.37 Total: -18.61 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 7.31 Total: 6.62 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -8.40 Total: -148.21 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.15 Total: -9.55 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -115.90 -3.58 -119.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340935513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.149 kcal (2) G-P(sol) polarization free energy of solvation -115.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -119.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.62 seconds