Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 C 1.31002 * 119.99785 * 126.33848 * 3 2 1 5 5 C 1.50696 * 119.99964 * 7.53342 * 4 3 2 6 6 C 1.53007 * 109.46645 * 127.62425 * 5 4 3 7 7 N 1.46506 * 109.46942 * 180.02562 * 6 5 4 8 8 C 1.39997 * 119.99892 * 179.97438 * 7 6 5 9 9 C 1.38646 * 120.10185 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00582 * 180.02562 * 9 8 7 11 11 C 1.38265 * 120.20362 * 359.97438 * 10 9 8 12 12 C 1.38242 * 120.19968 * 0.02562 * 11 10 9 13 13 C 1.38731 * 119.99253 * 0.02562 * 12 11 10 14 14 S 1.76205 * 120.09897 * 179.97438 * 13 12 11 15 15 C 1.81395 * 103.00352 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.47394 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99743 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99853 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 119.99945 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47012 * 90.00305 * 20 18 16 22 22 H 1.48495 * 109.47175 * 210.00002 * 20 18 16 23 23 H 1.48495 * 109.47468 * 330.00315 * 20 18 16 24 24 H 1.09004 * 109.47097 * 299.99750 * 1 2 3 25 25 H 1.08996 * 109.47464 * 59.99606 * 1 2 3 26 26 H 1.08992 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47097 * 240.00250 * 2 1 3 28 28 H 1.08997 * 109.46941 * 120.00383 * 2 1 3 29 29 H 1.08003 * 120.00300 * 306.33019 * 3 2 1 30 30 H 1.08003 * 119.99497 * 187.53913 * 4 3 2 31 31 H 1.09000 * 109.47522 * 7.62520 * 5 4 3 32 32 H 1.08996 * 109.47202 * 247.61932 * 5 4 3 33 33 H 1.08997 * 109.47332 * 60.00277 * 6 5 4 34 34 H 1.09003 * 109.46679 * 299.99385 * 6 5 4 35 35 H 0.96999 * 119.99714 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.99481 * 0.02562 * 9 8 7 37 37 H 1.08006 * 119.89729 * 180.02562 * 10 9 8 38 38 H 1.08005 * 119.90248 * 179.74585 * 11 10 9 39 39 H 1.08003 * 120.00340 * 180.02562 * 12 11 10 40 40 H 1.09008 * 109.47081 * 300.00113 * 15 14 13 41 41 H 1.09004 * 109.46870 * 59.99597 * 15 14 13 42 42 H 0.97000 * 119.99624 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8844 1.8143 0.9139 5 6 3.4924 0.8104 1.8592 6 6 5.0161 0.9479 1.8380 7 7 5.6073 -0.0284 2.7566 8 6 6.9975 -0.0941 2.9085 9 6 7.8167 0.7634 2.1903 10 6 9.1897 0.6964 2.3415 11 6 9.7499 -0.2237 3.2082 12 6 8.9410 -1.0828 3.9285 13 6 7.5627 -1.0234 3.7823 14 16 6.5290 -2.1175 4.6985 15 6 7.7182 -3.0939 5.6592 16 6 6.9771 -4.0927 6.5101 17 1 5.8985 -4.1355 6.4767 18 6 7.6759 -4.9519 7.3313 19 7 7.0291 -5.8238 8.0736 20 14 9.5415 -4.8783 7.3886 21 1 9.9671 -3.9223 8.4423 22 1 10.0808 -6.2271 7.6970 23 1 10.0599 -4.4271 6.0723 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6899 2.1147 -0.7535 30 1 3.1511 2.8581 0.9898 31 1 3.2141 -0.1965 1.5483 32 1 3.1252 0.9935 2.8690 33 1 5.2945 1.9548 2.1490 34 1 5.3834 0.7648 0.8282 35 1 5.0355 -0.6293 3.2595 36 1 7.3826 1.4837 1.5128 37 1 9.8262 1.3655 1.7815 38 1 10.8230 -0.2746 3.3194 39 1 9.3820 -1.8000 4.6049 40 1 8.3883 -3.6211 4.9800 41 1 8.2989 -2.4307 6.3004 42 1 7.5208 -6.4280 8.6516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342687956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = 11.390999 kcal Electronic energy + Delta-G solvation = -19676.256035 eV Core-core repulsion = 16746.346896 eV Total energy + Delta-G solvation = -2929.909139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25946 -38.13721 -36.27782 -35.27052 -32.99811 -32.18731 -31.29435 -30.53060 -28.26820 -25.12030 -24.50946 -24.12699 -23.26066 -22.11313 -19.56922 -19.14719 -18.38393 -17.47438 -17.26923 -16.78835 -16.34860 -15.78949 -15.66274 -15.18629 -15.01080 -14.96110 -14.70890 -14.61877 -14.54387 -14.33366 -13.86359 -13.13561 -13.03684 -12.95535 -12.77363 -12.71708 -12.43986 -12.30466 -12.16155 -11.93946 -11.82585 -11.64287 -11.30912 -10.97524 -10.93544 -10.89063 -10.45966 -9.85065 -8.83593 -8.42427 -7.88482 -6.52847 0.40902 0.69731 0.82692 1.30464 1.31088 1.32547 1.43060 1.83792 2.25298 2.56497 2.90255 2.92385 3.84253 3.95891 4.04093 4.17387 4.20467 4.24791 4.35019 4.48547 4.50368 4.53444 4.55804 4.62361 4.64824 4.71617 4.78037 4.79239 4.99892 5.00487 5.09832 5.18146 5.23403 5.24727 5.29522 5.35634 5.47788 5.70181 5.77404 5.94576 5.98899 6.00783 6.43843 6.50325 6.70525 7.10233 8.73122 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003516 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.971010 B = 7961.641168 C = 9624.612218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.154 4.154 4 C -0.160 4.160 5 C -0.110 4.110 6 C 0.136 3.864 7 N -0.750 5.750 8 C 0.221 3.779 9 C -0.186 4.186 10 C -0.076 4.076 11 C -0.166 4.166 12 C -0.110 4.110 13 C -0.175 4.175 14 S -0.163 6.163 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.041 0.959 18 C 0.025 3.975 19 N -0.935 5.935 20 Si 0.948 3.052 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.247 1.247 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 17.985 -18.047 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.172 4.172 4 C -0.179 4.179 5 C -0.147 4.147 6 C 0.012 3.988 7 N -0.380 5.380 8 C 0.112 3.888 9 C -0.210 4.210 10 C -0.097 4.097 11 C -0.187 4.187 12 C -0.135 4.135 13 C -0.292 4.292 14 S 0.080 5.920 15 C -0.106 4.106 16 C -0.572 4.572 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.573 5.573 20 Si 0.769 3.231 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.171 1.171 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.147 17.809 -17.984 25.647 hybrid contribution 1.500 -0.785 0.891 1.913 sum -2.647 17.024 -17.092 24.269 Atomic orbital electron populations 1.21681 0.94519 1.01948 1.02098 1.20891 0.96723 0.94961 1.02620 1.22990 0.98099 0.97612 0.98465 1.22646 0.98998 0.99398 0.96832 1.20967 0.93629 0.99968 1.00129 1.21327 0.92620 0.91982 0.92838 1.44977 1.02592 1.41495 1.48915 1.17535 0.84786 0.93203 0.93291 1.20847 0.93755 1.02283 1.04110 1.21266 0.94325 0.97345 0.96732 1.21081 1.00159 0.97914 0.99560 1.21139 0.91869 1.00121 1.00353 1.21522 0.97185 1.04224 1.06251 1.84863 1.17061 1.39890 1.50201 1.21369 0.95891 0.96554 0.96770 1.20605 0.94008 1.17920 1.24635 0.94071 1.25822 1.04395 0.93684 0.93687 1.70000 1.38598 1.21726 1.27022 0.85702 0.78523 0.78601 0.80250 1.18503 1.19851 1.17102 0.92979 0.91871 0.92420 0.91050 0.91415 0.85819 0.85689 0.90425 0.91046 0.91303 0.91688 0.76825 0.83439 0.82571 0.84230 0.87392 0.93964 0.94130 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.12 -1.71 6.04 29.85 0.18 -1.53 16 3 C -0.15 -2.13 9.51 25.64 0.24 -1.89 16 4 C -0.16 -2.31 9.51 25.64 0.24 -2.07 16 5 C -0.11 -1.93 5.41 29.85 0.16 -1.77 16 6 C 0.14 2.63 4.90 86.38 0.42 3.05 16 7 N -0.75 -20.61 5.68 -338.81 -1.93 -22.54 16 8 C 0.22 6.87 6.66 38.24 0.25 7.12 16 9 C -0.19 -4.59 9.31 22.38 0.21 -4.38 16 10 C -0.08 -1.73 10.04 22.29 0.22 -1.51 16 11 C -0.17 -4.51 10.04 22.28 0.22 -4.29 16 12 C -0.11 -3.87 9.36 22.39 0.21 -3.66 16 13 C -0.18 -6.54 6.12 22.70 0.14 -6.40 16 14 S -0.16 -7.16 20.37 -56.49 -1.15 -8.31 16 15 C 0.04 2.10 3.16 71.23 0.23 2.32 16 16 C -0.53 -31.43 9.68 25.60 0.25 -31.19 16 17 H 0.04 2.70 7.96 -2.91 -0.02 2.68 16 18 C 0.02 1.45 5.47 84.66 0.46 1.91 16 19 N -0.93 -57.85 13.96 21.45 0.30 -57.55 16 20 Si 0.95 43.24 27.47 68.60 1.88 45.13 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.15 5.28 -2.39 -0.01 1.14 16 29 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.08 1.47 5.30 -2.39 -0.01 1.46 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.19 7.96 -2.39 -0.02 1.18 16 34 H 0.06 1.18 7.95 -2.39 -0.02 1.17 16 35 H 0.40 12.00 7.02 -92.71 -0.65 11.35 16 36 H 0.15 2.75 6.74 -2.91 -0.02 2.73 16 37 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.11 4.02 5.88 -2.91 -0.02 4.00 16 40 H 0.04 2.05 6.80 -2.39 -0.02 2.04 16 41 H 0.04 1.95 7.18 -2.39 -0.02 1.93 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -67.13 352.66 3.56 -63.57 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.30 Total: 25.19 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.16 Total: -45.48 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.63 Total: -80.09 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.15 Total: -8.31 kcal Total: -67.13 3.56 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342687956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.956 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds