Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 H 1.08999 * 109.63041 * 54.60133 * 3 2 1 5 5 C 1.53246 * 109.62999 * 175.00055 * 3 2 1 6 6 N 1.46469 * 109.85732 * 181.70795 * 5 3 2 7 7 C 1.46906 * 110.99929 * 162.23396 * 6 5 3 8 8 C 1.50699 * 109.47190 * 169.99846 * 7 6 5 9 9 C 1.38628 * 119.74944 * 269.73078 * 8 7 6 10 10 C 1.37622 * 120.24930 * 179.72047 * 9 8 7 11 11 C 1.40722 * 119.74270 * 0.57031 * 10 9 8 12 12 C 1.41394 * 120.24532 * 179.68253 * 11 10 9 13 13 H 1.07992 * 120.00200 * 155.31069 * 12 11 10 14 14 C 1.39948 * 119.99856 * 335.30721 * 12 11 10 15 15 N 1.30825 * 120.00172 * 342.23152 * 14 12 11 16 16 Si 1.86801 * 120.00027 * 162.23384 * 14 12 11 17 17 H 1.48497 * 109.47060 * 94.66286 * 16 14 12 18 18 H 1.48500 * 109.47084 * 214.66729 * 16 14 12 19 19 H 1.48500 * 109.47179 * 334.66469 * 16 14 12 20 20 C 1.40719 * 119.50849 * 359.70275 * 11 10 9 21 21 C 1.37611 * 119.74946 * 359.97438 * 20 11 10 22 22 C 1.46467 * 112.56216 * 287.33875 * 6 5 3 23 23 C 1.53253 * 109.85625 * 72.65862 * 22 6 5 24 24 S 1.81897 * 109.62953 * 294.01352 * 3 2 1 25 25 H 1.08997 * 109.46856 * 59.99921 * 1 2 3 26 26 H 1.08996 * 109.46753 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46946 * 299.99847 * 1 2 3 28 28 H 1.08999 * 109.46946 * 240.00153 * 2 1 3 29 29 H 1.08994 * 109.47101 * 119.99607 * 2 1 3 30 30 H 1.09000 * 109.40818 * 61.58809 * 5 3 2 31 31 H 1.08999 * 109.40940 * 301.82381 * 5 3 2 32 32 H 1.08998 * 109.46765 * 289.99998 * 7 6 5 33 33 H 1.08998 * 109.47109 * 49.99463 * 7 6 5 34 34 H 1.08002 * 119.87691 * 359.97260 * 9 8 7 35 35 H 1.07998 * 120.13275 * 180.26946 * 10 9 8 36 36 H 0.96994 * 120.00229 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.12340 * 179.97438 * 20 11 10 38 38 H 1.07994 * 119.88128 * 180.02562 * 21 20 11 39 39 H 1.08997 * 109.41189 * 192.77859 * 22 6 5 40 40 H 1.09002 * 109.40621 * 312.54134 * 22 6 5 41 41 H 1.09001 * 109.63150 * 178.29777 * 23 22 6 42 42 H 1.08999 * 109.63430 * 57.70354 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9860 0.8369 5 6 3.5673 1.4487 0.1258 6 7 4.0576 2.8282 0.1672 7 6 5.4255 2.8850 0.6998 8 6 5.9848 4.2702 0.5012 9 6 6.6769 4.5725 -0.6613 10 6 7.1870 5.8358 -0.8559 11 6 7.0142 6.8189 0.1360 12 6 7.5398 8.1183 -0.0499 13 1 7.1011 8.9575 0.4692 14 6 8.6285 8.3168 -0.9065 15 7 9.3760 7.3030 -1.2600 16 14 9.0143 10.0293 -1.5452 17 1 10.0313 10.6663 -0.6705 18 1 9.5422 9.9338 -2.9299 19 1 7.7761 10.8491 -1.5429 20 6 6.3149 6.4990 1.3145 21 6 5.8077 5.2312 1.4848 22 6 3.9733 3.4939 -1.1347 23 6 2.5107 3.8143 -1.4618 24 16 1.5864 2.2510 -1.5650 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 4.0033 0.9349 -0.7310 31 1 3.8574 0.9336 1.0416 32 1 5.4113 2.6480 1.7636 33 1 6.0501 2.1623 0.1749 34 1 6.8127 3.8149 -1.4190 35 1 7.7221 6.0704 -1.7642 36 1 10.1304 7.4405 -1.8540 37 1 6.1769 7.2457 2.0825 38 1 5.2703 4.9835 2.3882 39 1 4.5491 4.4190 -1.1066 40 1 4.3811 2.8381 -1.9039 41 1 2.4550 4.3364 -2.4170 42 1 2.0877 4.4386 -0.6747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = 8.834752 kcal Electronic energy + Delta-G solvation = -20846.958051 eV Core-core repulsion = 17916.938064 eV Total energy + Delta-G solvation = -2930.019986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -38.75413 -37.07277 -34.97039 -33.69495 -31.22404 -30.40375 -29.33200 -28.58031 -26.06788 -23.71267 -23.48878 -21.46738 -21.28014 -20.57009 -19.62592 -17.35354 -16.92489 -15.47521 -15.45122 -15.23217 -14.84133 -14.43762 -14.11700 -13.79228 -13.70191 -13.51892 -13.01082 -12.83380 -12.56480 -12.08589 -12.00976 -11.87233 -11.72367 -11.61751 -11.44980 -11.29123 -11.12692 -11.02749 -10.91204 -10.67120 -10.42682 -10.32323 -9.65914 -9.48282 -9.44195 -9.15896 -8.09837 -7.56320 -7.47420 -7.35092 -6.82722 -4.41164 1.88901 2.65019 2.65924 3.00664 3.03749 3.06405 3.12977 3.88220 4.06580 4.58028 4.72866 4.83151 4.99957 5.15843 5.28698 5.35708 5.43221 5.48459 5.57123 5.63412 5.67783 5.77206 5.78845 5.84212 5.88827 6.03184 6.13570 6.17794 6.21405 6.29782 6.34455 6.39105 6.88732 7.01706 7.17453 7.30466 7.34772 7.39896 7.54947 7.81619 7.99115 8.05654 8.23717 8.57212 8.83388 8.90713 10.11548 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.003335 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.837393 B = 8394.786046 C = 8702.335730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.038 4.038 4 H 0.093 0.907 5 C 0.059 3.941 6 N -0.547 5.547 7 C 0.125 3.875 8 C -0.220 4.220 9 C -0.094 4.094 10 C -0.166 4.166 11 C 0.114 3.886 12 C -0.461 4.461 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.229 4.229 21 C -0.067 4.067 22 C 0.048 3.952 23 C -0.069 4.069 24 S -0.285 6.285 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.281 0.719 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.037 0.963 41 H 0.102 0.898 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -10.050 0.204 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.167 4.167 4 H 0.112 0.888 5 C -0.071 4.071 6 N -0.271 5.271 7 C 0.000 4.000 8 C -0.222 4.222 9 C -0.113 4.113 10 C -0.185 4.185 11 C 0.111 3.889 12 C -0.490 4.490 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.249 4.249 21 C -0.086 4.086 22 C -0.081 4.081 23 C -0.218 4.218 24 S -0.059 6.059 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.980 -10.224 -0.443 15.010 hybrid contribution 1.615 0.786 0.102 1.799 sum -9.365 -9.439 -0.342 13.300 Atomic orbital electron populations 1.21791 0.95077 1.01495 1.02593 1.21374 0.96613 0.93653 1.02667 1.23281 0.98093 0.98494 0.96819 0.88826 1.22252 0.93009 0.90426 1.01423 1.61313 1.24608 1.15216 1.25991 1.20703 0.85595 0.95277 0.98473 1.18829 1.10277 0.94690 0.98404 1.20523 0.98572 0.96404 0.95824 1.21282 1.04018 0.92989 1.00205 1.17633 0.88714 0.92964 0.89545 1.19617 1.12244 0.94336 1.22825 0.90412 1.25925 0.95006 0.98861 0.94393 1.69822 1.12500 1.32647 1.26656 0.86327 0.79543 0.82367 0.78695 1.19541 1.20005 1.18370 1.20971 1.09460 0.95990 0.98439 1.20333 0.98083 0.93412 0.96750 1.22406 0.94687 1.01805 0.89185 1.23559 0.97482 0.95464 1.05276 1.86644 1.66373 1.23193 1.29684 0.91769 0.92725 0.92604 0.91203 0.90797 0.93991 0.90342 0.91530 0.95659 0.89878 0.86530 0.90829 0.89063 0.89410 0.86747 0.94488 0.87971 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.75 37.16 0.36 -1.02 16 2 C -0.10 -1.01 5.41 -26.73 -0.14 -1.15 16 3 C -0.04 -0.45 2.76 -26.60 -0.07 -0.53 16 4 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.06 0.77 4.68 -3.93 -0.02 0.75 16 6 N -0.55 -8.59 4.55 -236.48 -1.08 -9.67 16 7 C 0.13 2.14 5.34 -4.97 -0.03 2.11 16 8 C -0.22 -4.53 4.12 -104.33 -0.43 -4.97 16 9 C -0.09 -2.08 7.57 -39.66 -0.30 -2.38 16 10 C -0.17 -4.13 8.70 -38.87 -0.34 -4.47 16 11 C 0.11 2.95 5.57 -106.82 -0.60 2.35 16 12 C -0.46 -11.96 9.05 -37.74 -0.34 -12.30 16 13 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 14 C 0.08 1.87 5.14 -17.34 -0.09 1.79 16 15 N -0.79 -20.03 10.97 55.55 0.61 -19.42 16 16 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 20 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 21 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 22 C 0.05 0.78 4.85 -3.93 -0.02 0.76 16 23 C -0.07 -1.00 6.69 37.29 0.25 -0.75 16 24 S -0.29 -3.87 20.65 -107.50 -2.22 -6.09 16 25 H 0.06 0.66 7.19 -51.93 -0.37 0.28 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.57 7.91 -51.93 -0.41 0.16 16 31 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 32 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.03 0.42 8.01 -51.93 -0.42 0.01 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.11 2.14 4.77 -51.93 -0.25 1.90 16 40 H 0.04 0.60 7.92 -51.93 -0.41 0.19 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -25.72 341.58 -11.89 -37.61 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.79 Total: 6.65 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -2.53 Total: -27.49 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: -0.47 Total: -29.09 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.22 Total: -6.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.72 -11.89 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.450 kcal (2) G-P(sol) polarization free energy of solvation -25.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds