Wall clock time and date at job start Tue Mar 31 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 H 1.08999 * 109.63041 * 54.60133 * 3 2 1 5 5 C 1.53246 * 109.62999 * 175.00055 * 3 2 1 6 6 N 1.46469 * 109.85732 * 181.70795 * 5 3 2 7 7 C 1.46906 * 110.99929 * 162.23396 * 6 5 3 8 8 C 1.50699 * 109.47190 * 169.99846 * 7 6 5 9 9 C 1.38628 * 119.74944 * 269.73078 * 8 7 6 10 10 C 1.37622 * 120.24930 * 179.72047 * 9 8 7 11 11 C 1.40722 * 119.74270 * 0.57031 * 10 9 8 12 12 C 1.41394 * 120.24532 * 179.68253 * 11 10 9 13 13 H 1.07992 * 120.00200 * 155.31069 * 12 11 10 14 14 C 1.39948 * 119.99856 * 335.30721 * 12 11 10 15 15 N 1.30825 * 120.00172 * 342.23152 * 14 12 11 16 16 Si 1.86801 * 120.00027 * 162.23384 * 14 12 11 17 17 H 1.48497 * 109.47060 * 94.66286 * 16 14 12 18 18 H 1.48500 * 109.47084 * 214.66729 * 16 14 12 19 19 H 1.48500 * 109.47179 * 334.66469 * 16 14 12 20 20 C 1.40719 * 119.50849 * 359.70275 * 11 10 9 21 21 C 1.37611 * 119.74946 * 359.97438 * 20 11 10 22 22 C 1.46467 * 112.56216 * 287.33875 * 6 5 3 23 23 C 1.53253 * 109.85625 * 72.65862 * 22 6 5 24 24 S 1.81897 * 109.62953 * 294.01352 * 3 2 1 25 25 H 1.08997 * 109.46856 * 59.99921 * 1 2 3 26 26 H 1.08996 * 109.46753 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46946 * 299.99847 * 1 2 3 28 28 H 1.08999 * 109.46946 * 240.00153 * 2 1 3 29 29 H 1.08994 * 109.47101 * 119.99607 * 2 1 3 30 30 H 1.09000 * 109.40818 * 61.58809 * 5 3 2 31 31 H 1.08999 * 109.40940 * 301.82381 * 5 3 2 32 32 H 1.08998 * 109.46765 * 289.99998 * 7 6 5 33 33 H 1.08998 * 109.47109 * 49.99463 * 7 6 5 34 34 H 1.08002 * 119.87691 * 359.97260 * 9 8 7 35 35 H 1.07998 * 120.13275 * 180.26946 * 10 9 8 36 36 H 0.96994 * 120.00229 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.12340 * 179.97438 * 20 11 10 38 38 H 1.07994 * 119.88128 * 180.02562 * 21 20 11 39 39 H 1.08997 * 109.41189 * 192.77859 * 22 6 5 40 40 H 1.09002 * 109.40621 * 312.54134 * 22 6 5 41 41 H 1.09001 * 109.63150 * 178.29777 * 23 22 6 42 42 H 1.08999 * 109.63430 * 57.70354 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9860 0.8369 5 6 3.5673 1.4487 0.1258 6 7 4.0576 2.8282 0.1672 7 6 5.4255 2.8850 0.6998 8 6 5.9848 4.2702 0.5012 9 6 6.6769 4.5725 -0.6613 10 6 7.1870 5.8358 -0.8559 11 6 7.0142 6.8189 0.1360 12 6 7.5398 8.1183 -0.0499 13 1 7.1011 8.9575 0.4692 14 6 8.6285 8.3168 -0.9065 15 7 9.3760 7.3030 -1.2600 16 14 9.0143 10.0293 -1.5452 17 1 10.0313 10.6663 -0.6705 18 1 9.5422 9.9338 -2.9299 19 1 7.7761 10.8491 -1.5429 20 6 6.3149 6.4990 1.3145 21 6 5.8077 5.2312 1.4848 22 6 3.9733 3.4939 -1.1347 23 6 2.5107 3.8143 -1.4618 24 16 1.5864 2.2510 -1.5650 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 4.0033 0.9349 -0.7310 31 1 3.8574 0.9336 1.0416 32 1 5.4113 2.6480 1.7636 33 1 6.0501 2.1623 0.1749 34 1 6.8127 3.8149 -1.4190 35 1 7.7221 6.0704 -1.7642 36 1 10.1304 7.4405 -1.8540 37 1 6.1769 7.2457 2.0825 38 1 5.2703 4.9835 2.3882 39 1 4.5491 4.4190 -1.1066 40 1 4.3811 2.8381 -1.9039 41 1 2.4550 4.3364 -2.4170 42 1 2.0877 4.4386 -0.6747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:22 Heat of formation + Delta-G solvation = -2.486133 kcal Electronic energy + Delta-G solvation = -20847.448961 eV Core-core repulsion = 17916.938064 eV Total energy + Delta-G solvation = -2930.510896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.24417 -38.58626 -36.09290 -35.32334 -32.73815 -31.73173 -31.09155 -29.89225 -27.62521 -25.15225 -24.66191 -22.98635 -22.39221 -22.06706 -21.17584 -19.22578 -17.99776 -17.19625 -16.65555 -16.57412 -15.95315 -15.84501 -15.67513 -15.22419 -15.07779 -14.72118 -14.25753 -14.17901 -13.83077 -13.79188 -13.40628 -13.22291 -13.02739 -12.94146 -12.86206 -12.65026 -12.39776 -12.29074 -12.17516 -11.98998 -11.89184 -11.58145 -11.32337 -11.25859 -10.97967 -10.57859 -9.42999 -9.30499 -9.12782 -8.65188 -8.63810 -6.33888 0.82994 0.91772 1.15094 1.37168 1.46657 1.52780 1.58240 2.19554 2.62411 2.98248 3.73152 3.75793 3.88623 4.03672 4.11162 4.16616 4.22902 4.33425 4.39545 4.47031 4.54949 4.57089 4.65162 4.67661 4.80172 4.82613 4.91714 4.95870 4.99350 5.04873 5.11110 5.15988 5.24738 5.36734 5.42822 5.46305 5.70013 5.93344 6.00082 6.09710 6.21189 6.26130 6.39233 6.69561 6.94043 7.03055 8.31453 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.003335 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.837393 B = 8394.786046 C = 8702.335730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.031 4.031 4 H 0.090 0.910 5 C 0.059 3.941 6 N -0.550 5.550 7 C 0.130 3.870 8 C -0.202 4.202 9 C -0.092 4.092 10 C -0.188 4.188 11 C 0.082 3.918 12 C -0.501 4.501 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.825 5.825 16 Si 0.979 3.021 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.244 4.244 21 C -0.069 4.069 22 C 0.055 3.945 23 C -0.068 4.068 24 S -0.292 6.292 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.288 0.712 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.108 0.892 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 -11.721 0.783 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.160 4.160 4 H 0.108 0.892 5 C -0.070 4.070 6 N -0.275 5.275 7 C 0.004 3.996 8 C -0.204 4.204 9 C -0.110 4.110 10 C -0.207 4.207 11 C 0.080 3.920 12 C -0.530 4.530 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.451 5.451 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.264 4.264 21 C -0.088 4.088 22 C -0.075 4.075 23 C -0.216 4.216 24 S -0.066 6.066 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.126 0.874 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.019 -11.912 0.142 16.923 hybrid contribution 1.828 1.121 -0.023 2.144 sum -10.192 -10.790 0.119 14.843 Atomic orbital electron populations 1.21770 0.94635 1.02376 1.01970 1.21389 0.96931 0.91906 1.03618 1.23359 0.97372 0.99796 0.95434 0.89171 1.22345 0.93486 0.88709 1.02455 1.61292 1.23496 1.17123 1.25591 1.20667 0.86376 0.92745 0.99835 1.19203 1.07987 0.96308 0.96864 1.20686 0.97974 0.95605 0.96776 1.21215 1.05401 0.94327 0.99764 1.17949 0.89889 0.93562 0.90587 1.19837 1.13733 0.94533 1.24933 0.90873 1.26726 0.94264 1.02880 0.93983 1.69871 1.13108 1.34702 1.27378 0.85244 0.79254 0.77215 0.78333 1.18725 1.19035 1.18340 1.21155 1.09851 0.97286 0.98088 1.20620 0.97652 0.92618 0.97913 1.22256 0.95339 1.00363 0.89527 1.23459 0.96499 0.96257 1.05412 1.86722 1.66124 1.22577 1.31142 0.93247 0.91142 0.92346 0.91322 0.88673 0.94105 0.88215 0.89752 0.94928 0.88444 0.88452 0.90174 0.88844 0.86840 0.89698 0.94768 0.87379 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.75 71.98 0.70 -1.60 16 2 C -0.10 -1.60 5.41 30.60 0.17 -1.43 16 3 C -0.03 -0.65 2.76 30.68 0.08 -0.57 16 4 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 5 C 0.06 1.36 4.68 86.47 0.40 1.76 16 6 N -0.55 -15.99 4.55 -902.08 -4.11 -20.09 16 7 C 0.13 4.08 5.34 85.56 0.46 4.54 16 8 C -0.20 -8.09 4.12 -19.67 -0.08 -8.18 16 9 C -0.09 -4.06 7.57 22.22 0.17 -3.89 16 10 C -0.19 -9.71 8.70 22.73 0.20 -9.51 16 11 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 12 C -0.50 -27.13 9.05 23.46 0.21 -26.91 16 13 H 0.07 3.85 7.91 -2.91 -0.02 3.82 16 14 C 0.04 1.84 5.14 85.26 0.44 2.28 16 15 N -0.82 -43.15 10.97 21.83 0.24 -42.91 16 16 Si 0.98 38.28 29.60 68.60 2.03 40.31 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 C -0.24 -11.90 9.80 22.73 0.22 -11.67 16 21 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 22 C 0.05 1.70 4.85 86.47 0.42 2.12 16 23 C -0.07 -1.90 6.69 72.07 0.48 -1.41 16 24 S -0.29 -7.44 20.65 -56.49 -1.17 -8.61 16 25 H 0.05 0.91 7.19 -2.39 -0.02 0.89 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.98 7.91 -2.39 -0.02 0.96 16 31 H 0.10 1.92 7.96 -2.39 -0.02 1.90 16 32 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 33 H 0.03 1.00 8.01 -2.39 -0.02 0.98 16 34 H 0.10 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.10 5.34 6.18 -2.91 -0.02 5.32 16 36 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 37 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 39 H 0.08 3.18 4.77 -2.39 -0.01 3.17 16 40 H 0.03 1.08 7.92 -2.39 -0.02 1.06 16 41 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -56.79 341.58 1.95 -54.84 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.98 Total: 29.35 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 3.97 Total: -52.90 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -3.87 Total: -63.00 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.17 Total: -8.61 kcal Total: -56.79 1.95 -54.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.359 kcal (2) G-P(sol) polarization free energy of solvation -56.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds