Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09002 * 109.62884 * 305.39424 * 3 2 1 5 5 C 1.53246 * 109.63024 * 185.00041 * 3 2 1 6 6 N 1.46470 * 109.85716 * 178.29093 * 5 3 2 7 7 C 1.46903 * 110.99816 * 197.76311 * 6 5 3 8 8 C 1.50699 * 109.46977 * 170.00331 * 7 6 5 9 9 C 1.38635 * 119.75470 * 90.00207 * 8 7 6 10 10 C 1.37611 * 120.25212 * 180.02562 * 9 8 7 11 11 C 1.40717 * 119.74429 * 359.97438 * 10 9 8 12 12 C 1.41393 * 120.24544 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00167 * 334.84990 * 12 11 10 14 14 C 1.39947 * 120.00447 * 154.85088 * 12 11 10 15 15 N 1.30829 * 119.99580 * 334.27844 * 14 12 11 16 16 Si 1.86794 * 120.00413 * 154.27772 * 14 12 11 17 17 H 1.48504 * 109.47556 * 180.02562 * 16 14 12 18 18 H 1.48495 * 109.47307 * 60.00117 * 16 14 12 19 19 H 1.48499 * 109.47060 * 300.00218 * 16 14 12 20 20 C 1.40717 * 119.51251 * 0.27207 * 11 10 9 21 21 C 1.37622 * 119.74258 * 359.45159 * 20 11 10 22 22 C 1.46469 * 112.56240 * 72.65663 * 6 5 3 23 23 C 1.53252 * 109.85705 * 287.34481 * 22 6 5 24 24 S 1.81896 * 109.63178 * 65.98465 * 3 2 1 25 25 H 1.08997 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47090 * 300.00673 * 1 2 3 27 27 H 1.09006 * 109.46823 * 60.00187 * 1 2 3 28 28 H 1.08994 * 109.47203 * 239.99701 * 2 1 3 29 29 H 1.08994 * 109.46828 * 119.99386 * 2 1 3 30 30 H 1.08992 * 109.40864 * 58.17138 * 5 3 2 31 31 H 1.08999 * 109.40682 * 298.40348 * 5 3 2 32 32 H 1.08993 * 109.47077 * 50.00131 * 7 6 5 33 33 H 1.09004 * 109.47115 * 290.00097 * 7 6 5 34 34 H 1.07997 * 119.87250 * 0.04226 * 9 8 7 35 35 H 1.07999 * 120.13162 * 179.97438 * 10 9 8 36 36 H 0.96996 * 120.00212 * 354.29995 * 15 14 12 37 37 H 1.07998 * 120.12873 * 179.72603 * 20 11 10 38 38 H 1.07997 * 119.87625 * 180.27232 * 21 20 11 39 39 H 1.09006 * 109.40517 * 47.45585 * 22 6 5 40 40 H 1.08992 * 109.41331 * 167.21951 * 22 6 5 41 41 H 1.08996 * 109.63054 * 302.29188 * 23 22 6 42 42 H 1.09005 * 109.79132 * 181.79992 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9860 -0.8369 5 6 3.5673 1.4486 -0.1258 6 7 4.0576 2.8282 -0.1673 7 6 5.4255 2.8849 -0.6998 8 6 5.8050 4.3203 -0.9579 9 6 6.4106 5.0627 0.0441 10 6 6.7609 6.3744 -0.1803 11 6 6.5026 6.9616 -1.4328 12 6 6.8585 8.3083 -1.6750 13 1 6.9415 9.0015 -0.8511 14 6 7.1034 8.7432 -2.9825 15 7 7.4993 7.8902 -3.8921 16 14 6.8650 10.5412 -3.4290 17 1 7.1873 10.7418 -4.8647 18 1 7.7639 11.3812 -2.5974 19 1 5.4536 10.9301 -3.1800 20 6 5.8826 6.2001 -2.4407 21 6 5.5462 4.8882 -2.1959 22 6 3.9732 3.4939 1.1346 23 6 2.5107 3.8143 1.4617 24 16 1.5864 2.2511 1.5649 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5137 0.8900 30 1 3.8573 0.9335 -1.0415 31 1 4.0033 0.9349 0.7310 32 1 5.4761 2.3224 -1.6320 33 1 6.1155 2.4512 0.0241 34 1 6.6085 4.6098 1.0043 35 1 7.2322 6.9511 0.6018 36 1 7.7027 6.9751 -3.6431 37 1 5.6757 6.6420 -3.4042 38 1 5.0743 4.3005 -2.9694 39 1 4.3810 2.8381 1.9039 40 1 4.5491 4.4189 1.1065 41 1 2.0878 4.4386 0.6746 42 1 2.4520 4.3381 2.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = 0.938663 kcal Electronic energy + Delta-G solvation = -20811.597400 eV Core-core repulsion = 17881.235014 eV Total energy + Delta-G solvation = -2930.362386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.74779 -37.29652 -35.05870 -33.88777 -31.30035 -30.27924 -29.52267 -28.46097 -25.95936 -23.77050 -23.49978 -21.50811 -21.28500 -20.77413 -19.84519 -17.95337 -16.98471 -15.52319 -15.46148 -14.94789 -14.72331 -14.52920 -14.18539 -13.99837 -13.82254 -13.60115 -13.17248 -12.90983 -12.43776 -12.25718 -12.15772 -11.96642 -11.87345 -11.57132 -11.47111 -11.32308 -11.17864 -11.07374 -10.81992 -10.56915 -10.41235 -10.35737 -9.68179 -9.59057 -9.47618 -9.00225 -8.16236 -7.71671 -7.61245 -7.52715 -7.20623 -4.46982 1.82124 2.57267 2.65355 2.84073 3.13724 3.21748 3.34324 3.98403 3.99709 4.55321 4.67162 4.78580 4.96677 5.04511 5.20684 5.27679 5.36002 5.37337 5.50131 5.51546 5.62900 5.68869 5.73327 5.77245 5.81616 5.98191 6.02214 6.06862 6.10892 6.12932 6.18492 6.24984 6.74383 6.96851 7.10473 7.23939 7.28828 7.36100 7.65834 7.73537 7.78886 7.93798 8.17048 8.28424 8.72599 8.85929 10.02030 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.003292 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.043738 B = 8503.251593 C = 8545.672673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.039 4.039 4 H 0.095 0.905 5 C 0.059 3.941 6 N -0.546 5.546 7 C 0.127 3.873 8 C -0.223 4.223 9 C -0.074 4.074 10 C -0.229 4.229 11 C 0.101 3.899 12 C -0.523 4.523 13 H 0.075 0.925 14 C 0.039 3.961 15 N -0.795 5.795 16 Si 1.064 2.936 17 H -0.274 1.274 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.222 4.222 21 C -0.057 4.057 22 C 0.053 3.947 23 C -0.071 4.071 24 S -0.281 6.281 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.299 0.701 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -11.104 5.823 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.168 4.168 4 H 0.113 0.887 5 C -0.071 4.071 6 N -0.270 5.270 7 C 0.002 3.998 8 C -0.225 4.225 9 C -0.093 4.093 10 C -0.249 4.249 11 C 0.098 3.902 12 C -0.550 4.550 13 H 0.093 0.907 14 C -0.183 4.183 15 N -0.418 5.418 16 Si 0.888 3.112 17 H -0.198 1.198 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.241 4.241 21 C -0.076 4.076 22 C -0.077 4.077 23 C -0.219 4.219 24 S -0.055 6.055 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.163 -10.191 5.023 14.596 hybrid contribution 1.214 -1.042 0.931 1.851 sum -7.949 -11.233 5.954 14.994 Atomic orbital electron populations 1.21794 0.95030 1.01538 1.02629 1.21371 0.96667 0.93567 1.02675 1.23303 0.98080 0.98568 0.96832 0.88694 1.22265 0.93074 0.90263 1.01477 1.61243 1.24878 1.15322 1.25573 1.20664 0.85812 0.95595 0.97779 1.18769 1.13050 0.94872 0.95791 1.20390 0.98296 0.94479 0.96142 1.20892 1.10143 0.94844 0.99011 1.17672 0.88582 0.92665 0.91326 1.20583 1.43068 0.95414 0.95981 0.90730 1.27014 0.91505 1.07379 0.92387 1.70455 1.25506 1.08276 1.37589 0.83651 0.77952 0.72536 0.77092 1.19845 1.20146 1.19967 1.21138 1.07411 0.94796 1.00796 1.20407 0.97435 0.94776 0.95021 1.22272 0.95059 1.00988 0.89340 1.23519 0.97280 0.95786 1.05355 1.86639 1.66432 1.22815 1.29641 0.92680 0.91790 0.92540 0.90735 0.91223 0.90197 0.94053 0.91481 0.95700 0.89693 0.89043 0.88708 0.87815 0.89349 0.94441 0.87934 0.89050 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.75 37.16 0.36 -1.02 16 2 C -0.10 -0.99 5.41 -26.73 -0.14 -1.14 16 3 C -0.04 -0.46 2.76 -26.60 -0.07 -0.54 16 4 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.06 0.75 4.72 -3.93 -0.02 0.73 16 6 N -0.55 -8.43 4.40 -236.48 -1.04 -9.47 16 7 C 0.13 2.13 5.11 -4.97 -0.03 2.10 16 8 C -0.22 -4.57 4.91 -104.33 -0.51 -5.08 16 9 C -0.07 -1.57 7.73 -39.66 -0.31 -1.88 16 10 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 11 C 0.10 2.61 5.30 -106.82 -0.57 2.05 16 12 C -0.52 -13.76 8.98 -37.74 -0.34 -14.10 16 13 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 14 C 0.04 0.99 4.93 -17.34 -0.09 0.90 16 15 N -0.80 -20.98 12.32 55.55 0.68 -20.29 16 16 Si 1.06 21.41 30.00 -169.99 -5.10 16.31 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.22 -5.58 7.96 -38.87 -0.31 -5.89 16 21 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 22 C 0.05 0.79 5.26 -3.93 -0.02 0.77 16 23 C -0.07 -0.98 6.69 37.29 0.25 -0.73 16 24 S -0.28 -3.70 20.65 -107.50 -2.22 -5.92 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.65 7.19 -51.93 -0.37 0.27 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 31 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 32 H 0.07 1.07 7.77 -51.93 -0.40 0.66 16 33 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 1.59 7.74 -52.49 -0.41 1.19 16 35 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.30 8.09 6.70 -40.82 -0.27 7.82 16 37 H 0.10 2.72 6.50 -52.49 -0.34 2.38 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 40 H 0.10 1.74 4.94 -51.93 -0.26 1.49 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -26.35 341.27 -11.81 -38.16 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.72 Total: 7.41 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.55 Total: -31.34 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: -0.36 Total: -29.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.10 Total: 16.31 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.22 Total: -5.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.35 -11.81 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.098 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds