Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09002 * 109.62884 * 305.39424 * 3 2 1 5 5 C 1.53246 * 109.63024 * 185.00041 * 3 2 1 6 6 N 1.46470 * 109.85716 * 178.29093 * 5 3 2 7 7 C 1.46903 * 110.99816 * 197.76311 * 6 5 3 8 8 C 1.50699 * 109.46977 * 170.00331 * 7 6 5 9 9 C 1.38635 * 119.75470 * 90.00207 * 8 7 6 10 10 C 1.37611 * 120.25212 * 180.02562 * 9 8 7 11 11 C 1.40717 * 119.74429 * 359.97438 * 10 9 8 12 12 C 1.41393 * 120.24544 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00167 * 334.84990 * 12 11 10 14 14 C 1.39947 * 120.00447 * 154.85088 * 12 11 10 15 15 N 1.30829 * 119.99580 * 334.27844 * 14 12 11 16 16 Si 1.86794 * 120.00413 * 154.27772 * 14 12 11 17 17 H 1.48504 * 109.47556 * 180.02562 * 16 14 12 18 18 H 1.48495 * 109.47307 * 60.00117 * 16 14 12 19 19 H 1.48499 * 109.47060 * 300.00218 * 16 14 12 20 20 C 1.40717 * 119.51251 * 0.27207 * 11 10 9 21 21 C 1.37622 * 119.74258 * 359.45159 * 20 11 10 22 22 C 1.46469 * 112.56240 * 72.65663 * 6 5 3 23 23 C 1.53252 * 109.85705 * 287.34481 * 22 6 5 24 24 S 1.81896 * 109.63178 * 65.98465 * 3 2 1 25 25 H 1.08997 * 109.47490 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47090 * 300.00673 * 1 2 3 27 27 H 1.09006 * 109.46823 * 60.00187 * 1 2 3 28 28 H 1.08994 * 109.47203 * 239.99701 * 2 1 3 29 29 H 1.08994 * 109.46828 * 119.99386 * 2 1 3 30 30 H 1.08992 * 109.40864 * 58.17138 * 5 3 2 31 31 H 1.08999 * 109.40682 * 298.40348 * 5 3 2 32 32 H 1.08993 * 109.47077 * 50.00131 * 7 6 5 33 33 H 1.09004 * 109.47115 * 290.00097 * 7 6 5 34 34 H 1.07997 * 119.87250 * 0.04226 * 9 8 7 35 35 H 1.07999 * 120.13162 * 179.97438 * 10 9 8 36 36 H 0.96996 * 120.00212 * 354.29995 * 15 14 12 37 37 H 1.07998 * 120.12873 * 179.72603 * 20 11 10 38 38 H 1.07997 * 119.87625 * 180.27232 * 21 20 11 39 39 H 1.09006 * 109.40517 * 47.45585 * 22 6 5 40 40 H 1.08992 * 109.41331 * 167.21951 * 22 6 5 41 41 H 1.08996 * 109.63054 * 302.29188 * 23 22 6 42 42 H 1.09005 * 109.79132 * 181.79992 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9860 -0.8369 5 6 3.5673 1.4486 -0.1258 6 7 4.0576 2.8282 -0.1673 7 6 5.4255 2.8849 -0.6998 8 6 5.8050 4.3203 -0.9579 9 6 6.4106 5.0627 0.0441 10 6 6.7609 6.3744 -0.1803 11 6 6.5026 6.9616 -1.4328 12 6 6.8585 8.3083 -1.6750 13 1 6.9415 9.0015 -0.8511 14 6 7.1034 8.7432 -2.9825 15 7 7.4993 7.8902 -3.8921 16 14 6.8650 10.5412 -3.4290 17 1 7.1873 10.7418 -4.8647 18 1 7.7639 11.3812 -2.5974 19 1 5.4536 10.9301 -3.1800 20 6 5.8826 6.2001 -2.4407 21 6 5.5462 4.8882 -2.1959 22 6 3.9732 3.4939 1.1346 23 6 2.5107 3.8143 1.4617 24 16 1.5864 2.2511 1.5649 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5137 0.8900 30 1 3.8573 0.9335 -1.0415 31 1 4.0033 0.9349 0.7310 32 1 5.4761 2.3224 -1.6320 33 1 6.1155 2.4512 0.0241 34 1 6.6085 4.6098 1.0043 35 1 7.2322 6.9511 0.6018 36 1 7.7027 6.9751 -3.6431 37 1 5.6757 6.6420 -3.4042 38 1 5.0743 4.3005 -2.9694 39 1 4.3810 2.8381 1.9039 40 1 4.5491 4.4189 1.1065 41 1 2.0878 4.4386 0.6746 42 1 2.4520 4.3381 2.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = -10.882550 kcal Electronic energy + Delta-G solvation = -20812.110006 eV Core-core repulsion = 17881.235014 eV Total energy + Delta-G solvation = -2930.874992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23850 -38.80597 -36.22739 -35.45422 -32.76425 -31.52556 -31.33455 -29.78999 -27.54697 -25.11745 -24.75250 -23.01343 -22.45672 -22.17153 -21.38213 -19.84529 -18.01659 -16.88235 -16.59970 -16.41246 -16.26433 -15.85698 -15.70343 -15.34092 -15.22711 -14.74646 -14.34540 -14.15666 -13.95968 -13.81867 -13.70170 -13.27536 -13.10214 -12.97548 -12.70889 -12.61921 -12.33715 -12.20999 -12.07889 -11.95918 -11.91390 -11.57379 -11.45093 -11.28044 -10.86558 -10.61642 -9.58393 -9.48655 -9.26176 -9.14873 -8.66540 -6.45005 0.79971 0.86804 0.96048 1.49319 1.54669 1.61534 1.78517 2.32410 2.57292 2.93077 3.58572 3.70153 3.83625 3.99255 4.06993 4.12187 4.20335 4.23313 4.36612 4.37735 4.46637 4.49782 4.58717 4.62642 4.70097 4.79464 4.84063 4.87502 4.88760 4.92800 5.08556 5.12548 5.21800 5.24474 5.40035 5.44318 5.73958 5.79583 5.83614 5.96758 6.11985 6.19172 6.27045 6.41746 6.80596 6.95014 8.04163 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.003292 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.043738 B = 8503.251593 C = 8545.672673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.034 4.034 4 H 0.083 0.917 5 C 0.061 3.939 6 N -0.558 5.558 7 C 0.132 3.868 8 C -0.201 4.201 9 C -0.069 4.069 10 C -0.244 4.244 11 C 0.071 3.929 12 C -0.563 4.563 13 H 0.069 0.931 14 C 0.004 3.996 15 N -0.819 5.819 16 Si 1.115 2.885 17 H -0.271 1.271 18 H -0.258 1.258 19 H -0.265 1.265 20 C -0.239 4.239 21 C -0.064 4.064 22 C 0.056 3.944 23 C -0.070 4.070 24 S -0.286 6.286 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.283 0.717 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 -13.114 6.576 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.163 4.163 4 H 0.102 0.898 5 C -0.068 4.068 6 N -0.283 5.283 7 C 0.006 3.994 8 C -0.203 4.203 9 C -0.088 4.088 10 C -0.264 4.264 11 C 0.069 3.931 12 C -0.591 4.591 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.442 5.442 16 Si 0.932 3.068 17 H -0.195 1.195 18 H -0.182 1.182 19 H -0.190 1.190 20 C -0.259 4.259 21 C -0.083 4.083 22 C -0.073 4.073 23 C -0.219 4.219 24 S -0.060 6.060 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.994 -12.224 5.799 16.820 hybrid contribution 1.383 -0.658 0.817 1.736 sum -8.611 -12.882 6.616 16.848 Atomic orbital electron populations 1.21775 0.94754 1.02400 1.01895 1.21381 0.96847 0.91860 1.03684 1.23367 0.97622 0.99813 0.95495 0.89849 1.22328 0.93308 0.88580 1.02582 1.61133 1.23866 1.17339 1.25918 1.20604 0.86989 0.92689 0.99145 1.19234 1.09903 0.96750 0.94388 1.20691 0.97114 0.93419 0.97572 1.21093 1.10622 0.96247 0.98430 1.17980 0.89417 0.93186 0.92545 1.20759 1.45727 0.96036 0.96625 0.91327 1.28384 0.89982 1.10767 0.92060 1.70570 1.28002 1.07799 1.37867 0.83036 0.78640 0.67975 0.77154 1.19519 1.18190 1.19028 1.21087 1.08647 0.96170 0.99990 1.20663 0.97239 0.93930 0.96472 1.22208 0.95450 1.00116 0.89527 1.23452 0.96637 0.96302 1.05478 1.86700 1.66436 1.22260 1.30568 0.91058 0.93116 0.92667 0.88885 0.90933 0.88586 0.93398 0.90059 0.94241 0.86667 0.88852 0.90478 0.89911 0.87574 0.93512 0.90057 0.90667 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.75 71.98 0.70 -1.65 16 2 C -0.10 -1.57 5.41 30.59 0.17 -1.41 16 3 C -0.03 -0.72 2.76 30.68 0.08 -0.63 16 4 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 5 C 0.06 1.35 4.72 86.47 0.41 1.75 16 6 N -0.56 -15.66 4.40 -902.10 -3.97 -19.63 16 7 C 0.13 3.98 5.11 85.56 0.44 4.42 16 8 C -0.20 -7.90 4.91 -19.67 -0.10 -8.00 16 9 C -0.07 -2.84 7.73 22.22 0.17 -2.67 16 10 C -0.24 -11.80 9.80 22.73 0.22 -11.57 16 11 C 0.07 3.84 5.30 -21.29 -0.11 3.73 16 12 C -0.56 -30.96 8.98 23.46 0.21 -30.75 16 13 H 0.07 3.69 7.96 -2.91 -0.02 3.67 16 14 C 0.00 0.21 4.93 85.26 0.42 0.63 16 15 N -0.82 -45.02 12.32 21.83 0.27 -44.75 16 16 Si 1.11 43.96 30.00 68.60 2.06 46.02 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 20 C -0.24 -12.43 7.96 22.73 0.18 -12.25 16 21 C -0.06 -2.86 9.67 22.22 0.21 -2.64 16 22 C 0.06 1.57 5.26 86.47 0.45 2.03 16 23 C -0.07 -1.83 6.69 72.07 0.48 -1.35 16 24 S -0.29 -6.95 20.65 -56.49 -1.17 -8.11 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.93 7.19 -2.39 -0.02 0.91 16 27 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.85 7.76 -2.39 -0.02 1.83 16 31 H 0.05 1.03 7.91 -2.39 -0.02 1.01 16 32 H 0.08 2.27 7.77 -2.39 -0.02 2.25 16 33 H 0.04 1.11 8.08 -2.38 -0.02 1.09 16 34 H 0.12 4.01 7.74 -2.91 -0.02 3.99 16 35 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.28 16.14 6.70 -92.71 -0.62 15.52 16 37 H 0.08 4.57 6.50 -2.91 -0.02 4.55 16 38 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.05 1.22 7.92 -2.38 -0.02 1.21 16 40 H 0.08 2.62 4.94 -2.39 -0.01 2.61 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -58.67 341.27 2.26 -56.41 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 1.13 Total: 30.43 kcal Atomic # 6 Polarization: -64.31 SS G_CDS: 3.95 Total: -60.36 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -3.70 Total: -64.38 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.06 Total: 46.02 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -1.17 Total: -8.11 kcal Total: -58.67 2.26 -56.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.528 kcal (2) G-P(sol) polarization free energy of solvation -58.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds