Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.40921 * 2 1 4 4 C 1.53249 * 109.34223 * 240.19440 * 2 1 3 5 5 H 1.09001 * 109.63165 * 182.22453 * 4 2 1 6 6 C 1.52997 * 109.63048 * 61.82713 * 4 2 1 7 7 S 1.81898 * 108.50607 * 301.92498 * 4 2 1 8 8 C 1.81899 * 101.91652 * 308.69475 * 7 4 2 9 9 C 1.53245 * 108.50407 * 51.30428 * 8 7 4 10 10 N 1.46465 * 109.86348 * 297.99689 * 9 8 7 11 11 C 1.46902 * 111.00485 * 197.76624 * 10 9 8 12 12 C 1.50696 * 109.46993 * 44.01740 * 11 10 9 13 13 C 1.38634 * 119.74683 * 90.00144 * 12 11 10 14 14 C 1.37624 * 120.24960 * 180.02562 * 13 12 11 15 15 C 1.40715 * 119.73842 * 359.97438 * 14 13 12 16 16 C 1.41404 * 120.23770 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00006 * 335.04172 * 16 15 14 18 18 C 1.39948 * 119.99570 * 155.04101 * 16 15 14 19 19 N 1.30824 * 120.00137 * 342.43899 * 18 16 15 20 20 Si 1.86806 * 119.99710 * 162.43588 * 18 16 15 21 21 H 1.48505 * 109.46934 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47126 * 300.00120 * 20 18 16 23 23 H 1.48500 * 109.46813 * 59.99973 * 20 18 16 24 24 C 1.40714 * 119.51567 * 0.27190 * 15 14 13 25 25 C 1.37620 * 119.74341 * 359.44876 * 24 15 14 26 26 H 1.08998 * 109.47338 * 293.04234 * 1 2 3 27 27 H 1.09004 * 109.46830 * 53.04676 * 1 2 3 28 28 H 1.09002 * 109.47016 * 173.03796 * 1 2 3 29 29 H 1.09004 * 109.46932 * 60.00435 * 6 4 2 30 30 H 1.09007 * 109.46761 * 179.97438 * 6 4 2 31 31 H 1.08994 * 109.47740 * 299.99817 * 6 4 2 32 32 H 1.08998 * 109.63276 * 171.01235 * 8 7 4 33 33 H 1.09003 * 109.63259 * 291.60321 * 8 7 4 34 34 H 1.09003 * 109.40785 * 177.87730 * 9 8 7 35 35 H 1.09000 * 109.40955 * 58.11699 * 9 8 7 36 36 H 1.09001 * 109.46567 * 284.01808 * 11 10 9 37 37 H 1.09000 * 109.46782 * 164.01737 * 11 10 9 38 38 H 1.07996 * 119.87960 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.13088 * 179.97438 * 14 13 12 40 40 H 0.97002 * 119.99669 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.12629 * 179.72821 * 24 15 14 42 42 H 1.07999 * 119.87320 * 180.27215 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0376 -0.7187 -1.2547 5 1 3.1269 -0.7562 -1.2399 6 6 1.5659 0.0305 -2.5025 7 16 1.3681 -2.4100 -1.2619 8 6 1.8167 -2.9985 0.3998 9 6 1.3395 -1.9660 1.4267 10 7 2.0166 -0.6874 1.1984 11 6 1.9165 0.1798 2.3799 12 6 2.1894 -0.6295 3.6215 13 6 3.4863 -0.7412 4.0985 14 6 3.7474 -1.4781 5.2312 15 6 2.6917 -2.1189 5.9057 16 6 2.9479 -2.8782 7.0708 17 1 3.9253 -3.3087 7.2307 18 6 1.9347 -3.0718 8.0165 19 7 0.8820 -2.2950 8.0157 20 14 2.0854 -4.4394 9.2800 21 1 0.8899 -4.4333 10.1611 22 1 2.1815 -5.7478 8.5842 23 1 3.3049 -4.2239 10.0996 24 6 1.3801 -2.0028 5.4095 25 6 1.1417 -1.2560 4.2784 26 1 -0.3634 0.4022 0.9456 27 1 -0.3633 0.6178 -0.8213 28 1 -0.3633 -1.0201 -0.1246 29 1 1.9570 1.0478 -2.4850 30 1 1.9287 -0.4827 -3.3932 31 1 0.4764 0.0602 -2.5184 32 1 1.3334 -3.9564 0.5919 33 1 2.8987 -3.1107 0.4689 34 1 1.5675 -2.3222 2.4314 35 1 0.2627 -1.8281 1.3283 36 1 0.9139 0.6036 2.4355 37 1 2.6476 0.9846 2.3028 38 1 4.2950 -0.2489 3.5789 39 1 4.7584 -1.5642 5.6008 40 1 0.1796 -2.4295 8.6711 41 1 0.5631 -2.4941 5.9169 42 1 0.1352 -1.1618 3.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343550839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = 7.445912 kcal Electronic energy + Delta-G solvation = -21323.628875 eV Core-core repulsion = 18393.548664 eV Total energy + Delta-G solvation = -2930.080211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.57065 -38.94522 -35.89893 -34.70315 -32.68841 -31.47922 -31.04474 -29.66099 -27.76919 -25.94235 -25.14757 -23.28782 -22.65721 -21.49282 -20.56494 -19.21627 -17.81006 -17.21037 -16.91536 -16.34691 -15.86857 -15.82080 -15.51802 -15.38981 -15.15067 -14.79411 -14.29052 -13.91045 -13.79507 -13.54733 -13.34718 -13.15640 -13.04705 -12.94532 -12.77941 -12.67878 -12.50957 -12.43258 -12.29769 -12.00968 -11.74292 -11.62214 -11.33930 -11.25437 -10.98192 -10.55584 -9.38591 -9.28917 -9.08422 -8.64475 -8.54560 -6.33766 0.84122 0.93148 1.15336 1.37125 1.47493 1.51773 1.59013 2.19772 2.63981 3.01404 3.69595 3.77215 3.91862 4.06723 4.13336 4.19428 4.27634 4.34117 4.43147 4.44713 4.54556 4.57613 4.62413 4.78900 4.80736 4.90363 4.92759 4.96744 5.00288 5.05468 5.07715 5.16206 5.25759 5.37118 5.40005 5.47204 5.70447 5.94655 6.05895 6.09883 6.25276 6.29682 6.39830 6.69824 6.94413 7.03415 8.32119 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.003671 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.450976 B = 7626.073654 C = 7860.602540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.102 0.898 4 C -0.031 4.031 5 H 0.087 0.913 6 C -0.128 4.128 7 S -0.292 6.292 8 C -0.066 4.066 9 C 0.048 3.952 10 N -0.544 5.544 11 C 0.129 3.871 12 C -0.200 4.200 13 C -0.071 4.071 14 C -0.245 4.245 15 C 0.084 3.916 16 C -0.504 4.504 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.261 1.261 23 H -0.260 1.260 24 C -0.187 4.187 25 C -0.091 4.091 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.288 0.712 41 H 0.097 0.903 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 3.668 -15.092 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.119 0.881 4 C -0.160 4.160 5 H 0.106 0.894 6 C -0.187 4.187 7 S -0.065 6.065 8 C -0.214 4.214 9 C -0.081 4.081 10 N -0.268 5.268 11 C 0.003 3.997 12 C -0.201 4.201 13 C -0.089 4.089 14 C -0.264 4.264 15 C 0.081 3.919 16 C -0.533 4.533 17 H 0.091 0.909 18 C -0.177 4.177 19 N -0.451 5.451 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.186 1.186 23 H -0.184 1.184 24 C -0.206 4.206 25 C -0.110 4.110 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.603 3.072 -15.874 16.248 hybrid contribution -0.121 0.020 2.141 2.144 sum -1.724 3.092 -13.733 14.182 Atomic orbital electron populations 1.22538 0.96350 1.03534 1.02080 1.21865 0.94059 0.98194 0.88581 0.88050 1.23307 1.02369 0.91922 0.98407 0.89413 1.21656 1.02372 1.00400 0.94245 1.86674 1.78557 1.18697 1.22574 1.23435 1.04322 1.01038 0.92631 1.22284 0.96638 0.89667 0.99536 1.61499 1.57677 1.04254 1.03397 1.20663 0.99470 0.93581 0.85978 1.19209 0.93018 1.07968 0.99901 1.20624 0.95843 0.97567 0.94911 1.21159 0.97944 1.06162 1.01164 1.17928 0.92189 0.89729 0.92031 1.19824 0.98802 1.30528 1.04192 0.90893 1.26709 0.93652 0.97393 0.99988 1.69867 1.08602 1.33370 1.33266 0.85303 0.79018 0.78415 0.77293 1.19157 1.18561 1.18437 1.21203 0.97244 1.04686 0.97507 1.20676 0.97164 0.97781 0.95342 0.93431 0.90158 0.91372 0.89217 0.91491 0.91341 0.87457 0.90097 0.89996 0.93532 0.94681 0.90126 0.86927 0.88913 0.90182 0.88534 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 7.53 71.98 0.54 -3.51 16 2 C 0.08 1.86 2.36 45.08 0.11 1.97 16 3 H 0.10 2.02 7.96 -2.39 -0.02 2.00 16 4 C -0.03 -0.65 3.08 30.68 0.09 -0.56 16 5 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 6 C -0.13 -1.95 8.93 71.98 0.64 -1.31 16 7 S -0.29 -7.31 20.14 -56.49 -1.14 -8.44 16 8 C -0.07 -1.82 6.69 72.06 0.48 -1.34 16 9 C 0.05 1.47 4.60 86.47 0.40 1.87 16 10 N -0.54 -15.59 4.49 -876.74 -3.94 -19.53 16 11 C 0.13 4.06 5.26 85.56 0.45 4.51 16 12 C -0.20 -7.99 4.13 -19.68 -0.08 -8.07 16 13 C -0.07 -3.02 9.67 22.22 0.21 -2.80 16 14 C -0.24 -11.97 9.80 22.73 0.22 -11.75 16 15 C 0.08 4.50 5.57 -21.29 -0.12 4.38 16 16 C -0.50 -27.38 9.05 23.46 0.21 -27.16 16 17 H 0.07 3.84 7.90 -2.92 -0.02 3.82 16 18 C 0.04 1.90 5.14 85.26 0.44 2.34 16 19 N -0.83 -43.25 10.99 21.83 0.24 -43.01 16 20 Si 0.98 38.37 29.59 68.60 2.03 40.40 16 21 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 C -0.19 -9.68 8.69 22.73 0.20 -9.48 16 25 C -0.09 -4.02 7.55 22.22 0.17 -3.85 16 26 H 0.05 1.12 6.73 -2.39 -0.02 1.10 16 27 H 0.08 1.40 6.85 -2.38 -0.02 1.39 16 28 H 0.07 1.67 5.12 -2.39 -0.01 1.66 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.04 6.64 -2.39 -0.02 1.03 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 3.05 4.76 -2.39 -0.01 3.04 16 35 H 0.05 1.42 5.73 -2.39 -0.01 1.41 16 36 H 0.04 1.07 6.60 -2.39 -0.02 1.06 16 37 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 38 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 41 H 0.10 5.29 6.21 -2.91 -0.02 5.27 16 42 H 0.10 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -56.70 330.35 2.17 -54.53 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 1.00 Total: 30.81 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 3.97 Total: -54.77 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -3.70 Total: -62.54 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.14 Total: -8.44 kcal Total: -56.70 2.17 -54.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343550839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.980 kcal (2) G-P(sol) polarization free energy of solvation -56.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds