Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.63172 * 2 1 4 4 S 1.81898 * 109.63087 * 120.39249 * 2 1 3 5 5 C 1.81903 * 101.91413 * 171.20786 * 4 2 1 6 6 C 1.53247 * 108.50907 * 308.69820 * 5 4 2 7 7 N 1.46464 * 109.85970 * 61.99719 * 6 5 4 8 8 C 1.46906 * 110.99995 * 162.23961 * 7 6 5 9 9 C 1.50699 * 109.47264 * 175.54083 * 8 7 6 10 10 C 1.38638 * 119.74736 * 263.59565 * 9 8 7 11 11 C 1.37612 * 120.24594 * 180.02562 * 10 9 8 12 12 C 1.40719 * 119.74832 * 359.97438 * 11 10 9 13 13 C 1.41399 * 120.24346 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99861 * 153.16543 * 13 12 11 15 15 C 1.39940 * 119.99890 * 333.16560 * 13 12 11 16 16 N 1.30822 * 119.99867 * 158.61327 * 15 13 12 17 17 Si 1.86802 * 120.00308 * 338.61098 * 15 13 12 18 18 H 1.48503 * 109.47144 * 89.41456 * 17 15 13 19 19 H 1.48504 * 109.47314 * 209.41853 * 17 15 13 20 20 H 1.48500 * 109.47002 * 329.41871 * 17 15 13 21 21 C 1.40718 * 119.51051 * 359.97438 * 12 11 10 22 22 C 1.37618 * 119.74138 * 0.02562 * 21 12 11 23 23 C 1.46471 * 112.56454 * 287.34832 * 7 6 5 24 24 H 1.08993 * 109.40798 * 192.77607 * 23 7 6 25 25 C 1.52999 * 109.40290 * 312.53793 * 23 7 6 26 26 H 1.08999 * 109.47604 * 299.60665 * 1 2 3 27 27 H 1.08999 * 109.47334 * 59.60506 * 1 2 3 28 28 H 1.09006 * 109.47077 * 179.60589 * 1 2 3 29 29 H 1.08997 * 109.63001 * 188.98775 * 5 4 2 30 30 H 1.09007 * 109.79105 * 68.49700 * 5 4 2 31 31 H 1.09007 * 109.40148 * 301.88430 * 6 5 4 32 32 H 1.08994 * 109.40896 * 182.12357 * 6 5 4 33 33 H 1.08991 * 109.46992 * 55.53836 * 8 7 6 34 34 H 1.09002 * 109.46551 * 295.53390 * 8 7 6 35 35 H 1.08001 * 119.87476 * 359.97438 * 10 9 8 36 36 H 1.08002 * 120.12636 * 180.25396 * 11 10 9 37 37 H 0.97006 * 120.00131 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.12616 * 179.97438 * 21 12 11 39 39 H 1.07999 * 119.86926 * 180.02562 * 22 21 12 40 40 H 1.08996 * 109.47384 * 66.03661 * 25 23 7 41 41 H 1.08998 * 109.46917 * 186.03797 * 25 23 7 42 42 H 1.09004 * 109.47448 * 306.03394 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 16 2.1410 -0.8668 1.4778 5 6 3.9239 -0.9814 1.1356 6 6 4.1134 -1.5780 -0.2633 7 7 3.5130 -0.6953 -1.2661 8 6 4.0255 -0.9988 -2.6090 9 6 3.3072 -0.1485 -3.6249 10 6 2.2205 -0.6677 -4.3116 11 6 1.5574 0.0995 -5.2418 12 6 1.9859 1.4158 -5.4945 13 6 1.3126 2.2133 -6.4485 14 1 1.3223 3.2893 -6.3563 15 6 0.6335 1.6082 -7.5120 16 7 -0.3120 2.2592 -8.1393 17 14 1.0773 -0.1291 -8.0360 18 1 0.2583 -1.1019 -7.2691 19 1 0.8092 -0.2920 -9.4876 20 1 2.5171 -0.3744 -7.7680 21 6 3.0894 1.9327 -4.7907 22 6 3.7374 1.1473 -3.8649 23 6 2.0489 -0.7317 -1.2425 24 1 1.6601 -0.2462 -2.1375 25 6 1.5771 -2.1867 -1.2097 26 1 -0.3634 0.5077 0.8935 27 1 -0.3634 0.5199 -0.8864 28 1 -0.3633 -1.0277 -0.0071 29 1 4.3982 -1.6257 1.8758 30 1 4.3717 0.0117 1.1739 31 1 3.6337 -2.5558 -0.3079 32 1 5.1780 -1.6884 -0.4688 33 1 3.8571 -2.0522 -2.8326 34 1 5.0938 -0.7855 -2.6469 35 1 1.8937 -1.6784 -4.1163 36 1 0.7086 -0.3056 -5.7727 37 1 -0.7830 1.8397 -8.8763 38 1 3.4270 2.9415 -4.9771 39 1 4.5843 1.5421 -3.3233 40 1 1.8767 -2.6447 -0.2671 41 1 0.4914 -2.2187 -1.3003 42 1 2.0270 -2.7334 -2.0385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343550840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = 20.212786 kcal Electronic energy + Delta-G solvation = -21685.124808 eV Core-core repulsion = 18755.598211 eV Total energy + Delta-G solvation = -2929.526597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -39.35434 -37.43860 -34.05957 -33.62343 -31.86667 -29.91752 -29.65546 -28.68838 -26.23039 -25.15804 -23.11012 -21.96341 -21.58224 -20.16915 -19.31478 -17.46592 -16.72569 -15.89964 -15.63133 -15.11507 -14.77157 -14.47196 -14.31472 -13.88827 -13.80897 -13.43062 -12.90116 -12.77030 -12.57150 -12.40599 -12.29910 -12.10608 -11.85990 -11.70262 -11.47922 -11.25577 -11.16955 -10.80235 -10.75233 -10.68183 -10.50835 -10.25455 -9.85678 -9.56287 -9.47429 -9.11122 -8.14466 -7.74006 -7.58647 -7.50273 -7.03878 -4.52655 1.84290 2.48413 2.58754 2.68145 3.05631 3.16345 3.26248 3.91638 3.98886 4.47927 4.80800 4.87581 5.11337 5.17779 5.21143 5.29474 5.40237 5.49457 5.57549 5.62449 5.62766 5.72495 5.75510 5.86947 5.97348 6.03671 6.07250 6.10627 6.12464 6.17811 6.32170 6.44662 6.56441 6.80724 6.87349 7.12901 7.25118 7.31290 7.40560 7.58943 7.79705 7.84396 8.09899 8.30294 8.62440 8.75029 9.98099 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004490 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.688727 B = 6234.031792 C = 6486.230325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 H 0.093 0.907 4 S -0.286 6.286 5 C -0.071 4.071 6 C 0.047 3.953 7 N -0.541 5.541 8 C 0.125 3.875 9 C -0.223 4.223 10 C -0.066 4.066 11 C -0.249 4.249 12 C 0.097 3.903 13 C -0.446 4.446 14 H 0.090 0.910 15 C 0.086 3.914 16 N -0.802 5.802 17 Si 0.916 3.084 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.248 1.248 21 C -0.215 4.215 22 C -0.055 4.055 23 C 0.079 3.921 24 H 0.116 0.884 25 C -0.188 4.188 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 -7.794 12.519 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 H 0.112 0.888 4 S -0.059 6.059 5 C -0.219 4.219 6 C -0.083 4.083 7 N -0.265 5.265 8 C -0.001 4.001 9 C -0.224 4.224 10 C -0.085 4.085 11 C -0.268 4.268 12 C 0.094 3.906 13 C -0.474 4.474 14 H 0.108 0.892 15 C -0.134 4.134 16 N -0.425 5.425 17 Si 0.743 3.257 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.172 1.172 21 C -0.235 4.235 22 C -0.074 4.074 23 C -0.031 4.031 24 H 0.134 0.866 25 C -0.247 4.247 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.119 -7.606 13.350 15.907 hybrid contribution 0.482 -1.001 -1.533 1.893 sum 4.601 -8.607 11.817 15.327 Atomic orbital electron populations 1.21672 0.92038 1.02957 1.02762 1.23286 0.98622 1.01308 0.92802 0.88843 1.86668 1.08297 1.78442 1.32468 1.23426 0.94112 1.04940 0.99466 1.22212 1.00054 0.95182 0.90804 1.61506 1.06293 1.53086 1.05591 1.20692 0.97953 0.95999 0.85469 1.18834 1.02544 0.96397 1.04642 1.20462 0.94881 0.97245 0.95875 1.21102 1.03852 0.97171 1.04664 1.17725 0.89811 0.91280 0.91807 1.19542 1.25052 0.96231 1.06537 0.89205 1.26192 0.91590 1.00099 0.95555 1.69723 1.15001 1.39724 1.18049 0.86328 0.81888 0.81456 0.76073 1.19411 1.21943 1.17158 1.20986 0.99062 0.99947 1.03494 1.20431 0.97882 0.93195 0.95890 1.21894 0.87462 0.95235 0.98521 0.86597 1.22567 1.01944 0.97817 1.02359 0.91985 0.90587 0.91632 0.88203 0.89353 0.93030 0.90350 0.95513 0.91389 0.89353 0.87996 0.90344 0.88364 0.88842 0.90857 0.92045 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.95 37.15 0.33 -1.35 16 2 C -0.03 -0.43 3.08 -26.61 -0.08 -0.51 16 3 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 4 S -0.29 -3.69 20.15 -107.50 -2.17 -5.85 16 5 C -0.07 -0.79 6.69 37.29 0.25 -0.54 16 6 C 0.05 0.56 5.18 -3.93 -0.02 0.54 16 7 N -0.54 -7.81 4.45 -228.48 -1.02 -8.83 16 8 C 0.12 1.95 4.92 -4.97 -0.02 1.92 16 9 C -0.22 -4.25 4.11 -104.33 -0.43 -4.67 16 10 C -0.07 -1.34 7.98 -39.66 -0.32 -1.66 16 11 C -0.25 -5.79 7.37 -38.87 -0.29 -6.07 16 12 C 0.10 2.39 5.15 -106.82 -0.55 1.84 16 13 C -0.45 -11.82 9.56 -37.74 -0.36 -12.18 16 14 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 15 C 0.09 2.20 5.37 -17.34 -0.09 2.10 16 16 N -0.80 -20.95 13.93 55.55 0.77 -20.17 16 17 Si 0.92 20.52 24.68 -169.99 -4.20 16.32 16 18 H -0.27 -5.83 6.34 56.52 0.36 -5.47 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.22 -4.88 9.80 -38.87 -0.38 -5.26 16 22 C -0.06 -1.12 9.69 -39.66 -0.38 -1.50 16 23 C 0.08 1.16 2.02 -67.82 -0.14 1.02 16 24 H 0.12 2.04 5.07 -51.93 -0.26 1.78 16 25 C -0.19 -2.53 7.58 37.16 0.28 -2.25 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.78 6.59 -51.93 -0.34 0.44 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.05 0.62 5.71 -51.93 -0.30 0.33 16 32 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 33 H 0.03 0.41 7.11 -51.93 -0.37 0.04 16 34 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.09 1.64 7.80 -52.49 -0.41 1.23 16 36 H 0.10 2.40 4.42 -52.49 -0.23 2.17 16 37 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.07 0.95 5.10 -51.93 -0.26 0.69 16 41 H 0.06 0.80 6.78 -51.93 -0.35 0.45 16 42 H 0.05 0.73 6.80 -51.93 -0.35 0.38 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -25.78 325.86 -10.17 -35.96 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.28 Total: 6.24 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.20 Total: -28.58 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: -0.24 Total: -29.00 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.20 Total: 16.32 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.17 Total: -5.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.78 -10.17 -35.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343550840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.171 kcal (2) G-P(sol) polarization free energy of solvation -25.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds