Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.63172 * 2 1 4 4 S 1.81898 * 109.63087 * 120.39249 * 2 1 3 5 5 C 1.81903 * 101.91413 * 171.20786 * 4 2 1 6 6 C 1.53247 * 108.50907 * 308.69820 * 5 4 2 7 7 N 1.46464 * 109.85970 * 61.99719 * 6 5 4 8 8 C 1.46906 * 110.99995 * 162.23961 * 7 6 5 9 9 C 1.50699 * 109.47264 * 175.54083 * 8 7 6 10 10 C 1.38638 * 119.74736 * 263.59565 * 9 8 7 11 11 C 1.37612 * 120.24594 * 180.02562 * 10 9 8 12 12 C 1.40719 * 119.74832 * 359.97438 * 11 10 9 13 13 C 1.41399 * 120.24346 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99861 * 153.16543 * 13 12 11 15 15 C 1.39940 * 119.99890 * 333.16560 * 13 12 11 16 16 N 1.30822 * 119.99867 * 158.61327 * 15 13 12 17 17 Si 1.86802 * 120.00308 * 338.61098 * 15 13 12 18 18 H 1.48503 * 109.47144 * 89.41456 * 17 15 13 19 19 H 1.48504 * 109.47314 * 209.41853 * 17 15 13 20 20 H 1.48500 * 109.47002 * 329.41871 * 17 15 13 21 21 C 1.40718 * 119.51051 * 359.97438 * 12 11 10 22 22 C 1.37618 * 119.74138 * 0.02562 * 21 12 11 23 23 C 1.46471 * 112.56454 * 287.34832 * 7 6 5 24 24 H 1.08993 * 109.40798 * 192.77607 * 23 7 6 25 25 C 1.52999 * 109.40290 * 312.53793 * 23 7 6 26 26 H 1.08999 * 109.47604 * 299.60665 * 1 2 3 27 27 H 1.08999 * 109.47334 * 59.60506 * 1 2 3 28 28 H 1.09006 * 109.47077 * 179.60589 * 1 2 3 29 29 H 1.08997 * 109.63001 * 188.98775 * 5 4 2 30 30 H 1.09007 * 109.79105 * 68.49700 * 5 4 2 31 31 H 1.09007 * 109.40148 * 301.88430 * 6 5 4 32 32 H 1.08994 * 109.40896 * 182.12357 * 6 5 4 33 33 H 1.08991 * 109.46992 * 55.53836 * 8 7 6 34 34 H 1.09002 * 109.46551 * 295.53390 * 8 7 6 35 35 H 1.08001 * 119.87476 * 359.97438 * 10 9 8 36 36 H 1.08002 * 120.12636 * 180.25396 * 11 10 9 37 37 H 0.97006 * 120.00131 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.12616 * 179.97438 * 21 12 11 39 39 H 1.07999 * 119.86926 * 180.02562 * 22 21 12 40 40 H 1.08996 * 109.47384 * 66.03661 * 25 23 7 41 41 H 1.08998 * 109.46917 * 186.03797 * 25 23 7 42 42 H 1.09004 * 109.47448 * 306.03394 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 16 2.1410 -0.8668 1.4778 5 6 3.9239 -0.9814 1.1356 6 6 4.1134 -1.5780 -0.2633 7 7 3.5130 -0.6953 -1.2661 8 6 4.0255 -0.9988 -2.6090 9 6 3.3072 -0.1485 -3.6249 10 6 2.2205 -0.6677 -4.3116 11 6 1.5574 0.0995 -5.2418 12 6 1.9859 1.4158 -5.4945 13 6 1.3126 2.2133 -6.4485 14 1 1.3223 3.2893 -6.3563 15 6 0.6335 1.6082 -7.5120 16 7 -0.3120 2.2592 -8.1393 17 14 1.0773 -0.1291 -8.0360 18 1 0.2583 -1.1019 -7.2691 19 1 0.8092 -0.2920 -9.4876 20 1 2.5171 -0.3744 -7.7680 21 6 3.0894 1.9327 -4.7907 22 6 3.7374 1.1473 -3.8649 23 6 2.0489 -0.7317 -1.2425 24 1 1.6601 -0.2462 -2.1375 25 6 1.5771 -2.1867 -1.2097 26 1 -0.3634 0.5077 0.8935 27 1 -0.3634 0.5199 -0.8864 28 1 -0.3633 -1.0277 -0.0071 29 1 4.3982 -1.6257 1.8758 30 1 4.3717 0.0117 1.1739 31 1 3.6337 -2.5558 -0.3079 32 1 5.1780 -1.6884 -0.4688 33 1 3.8571 -2.0522 -2.8326 34 1 5.0938 -0.7855 -2.6469 35 1 1.8937 -1.6784 -4.1163 36 1 0.7086 -0.3056 -5.7727 37 1 -0.7830 1.8397 -8.8763 38 1 3.4270 2.9415 -4.9771 39 1 4.5843 1.5421 -3.3233 40 1 1.8767 -2.6447 -0.2671 41 1 0.4914 -2.2187 -1.3003 42 1 2.0270 -2.7334 -2.0385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343550840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = 6.920600 kcal Electronic energy + Delta-G solvation = -21685.701201 eV Core-core repulsion = 18755.598211 eV Total energy + Delta-G solvation = -2930.102990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66135 -39.00769 -35.71980 -34.85812 -33.32807 -31.53628 -31.08546 -29.87778 -27.71384 -26.30374 -24.58911 -23.31280 -22.99877 -21.80897 -20.48211 -19.34583 -17.85914 -17.41972 -16.88392 -16.39639 -16.16865 -15.73842 -15.59332 -15.37273 -15.26736 -14.84525 -14.48855 -14.09920 -13.77365 -13.76517 -13.53360 -13.49967 -13.07616 -12.86506 -12.86349 -12.60635 -12.53215 -12.45819 -12.26915 -12.00442 -11.75495 -11.67865 -11.42837 -11.35981 -10.91281 -10.53538 -9.48586 -9.41295 -9.16922 -8.93657 -8.53277 -6.48418 0.74541 0.85234 0.91292 1.24484 1.38717 1.47231 1.61425 2.09766 2.51072 2.98359 3.56278 3.73213 3.91558 4.06040 4.09298 4.21461 4.26482 4.32974 4.39899 4.44521 4.51051 4.57018 4.57775 4.70158 4.73663 4.76525 4.83848 4.92961 4.97964 5.02948 5.04474 5.05338 5.13495 5.22236 5.32963 5.37536 5.62623 5.76701 5.91880 6.01936 6.18731 6.26182 6.28277 6.43182 6.75826 6.84580 8.14846 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004490 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.688727 B = 6234.031792 C = 6486.230325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 H 0.076 0.924 4 S -0.292 6.292 5 C -0.065 4.065 6 C 0.048 3.952 7 N -0.549 5.549 8 C 0.127 3.873 9 C -0.194 4.194 10 C -0.066 4.066 11 C -0.259 4.259 12 C 0.077 3.923 13 C -0.488 4.488 14 H 0.053 0.947 15 C 0.051 3.949 16 N -0.845 5.845 17 Si 0.968 3.032 18 H -0.256 1.256 19 H -0.277 1.277 20 H -0.257 1.257 21 C -0.229 4.229 22 C -0.056 4.056 23 C 0.081 3.919 24 H 0.084 0.916 25 C -0.181 4.181 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.294 0.706 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -10.819 14.809 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 H 0.094 0.906 4 S -0.066 6.066 5 C -0.213 4.213 6 C -0.081 4.081 7 N -0.273 5.273 8 C 0.001 3.999 9 C -0.195 4.195 10 C -0.085 4.085 11 C -0.278 4.278 12 C 0.074 3.926 13 C -0.517 4.517 14 H 0.071 0.929 15 C -0.164 4.164 16 N -0.471 5.471 17 Si 0.792 3.208 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.181 1.181 21 C -0.248 4.248 22 C -0.074 4.074 23 C -0.029 4.029 24 H 0.102 0.898 25 C -0.239 4.239 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.019 -10.629 15.653 19.855 hybrid contribution 0.057 -0.090 -1.953 1.956 sum 6.076 -10.719 13.700 18.426 Atomic orbital electron populations 1.21645 0.91428 1.03302 1.02708 1.23184 0.99255 1.00407 0.93206 0.90556 1.86723 1.10129 1.77954 1.31747 1.23516 0.92543 1.05455 0.99834 1.22298 1.01056 0.94670 0.90080 1.61448 1.06078 1.54314 1.05421 1.20692 0.98371 0.95778 0.85044 1.19320 1.00795 0.95995 1.03378 1.20734 0.94794 0.98149 0.94813 1.21180 1.04156 0.96876 1.05581 1.17844 0.90571 0.92134 0.92014 1.19508 1.28355 0.94834 1.09051 0.92860 1.26818 0.91212 1.03323 0.95089 1.69749 1.16432 1.41514 1.19428 0.85525 0.80946 0.77765 0.76592 1.18149 1.20396 1.18108 1.21160 0.99047 1.00438 1.04171 1.20728 0.98206 0.93402 0.95081 1.21769 0.87812 0.95842 0.97492 0.89771 1.22497 1.02031 0.96714 1.02707 0.91212 0.91557 0.91019 0.85625 0.89580 0.92587 0.88253 0.94188 0.89566 0.86824 0.88590 0.89544 0.88632 0.86203 0.90047 0.91951 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.95 71.98 0.64 -2.49 16 2 C -0.03 -0.81 3.08 30.67 0.09 -0.71 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 4 S -0.29 -6.71 20.15 -56.49 -1.14 -7.84 16 5 C -0.07 -1.19 6.69 72.06 0.48 -0.71 16 6 C 0.05 0.91 5.18 86.47 0.45 1.36 16 7 N -0.55 -13.75 4.45 -876.77 -3.90 -17.66 16 8 C 0.13 3.41 4.92 85.56 0.42 3.83 16 9 C -0.19 -6.82 4.11 -19.67 -0.08 -6.90 16 10 C -0.07 -2.56 7.98 22.22 0.18 -2.39 16 11 C -0.26 -11.97 7.37 22.73 0.17 -11.80 16 12 C 0.08 3.91 5.15 -21.29 -0.11 3.80 16 13 C -0.49 -27.57 9.56 23.46 0.22 -27.35 16 14 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 15 C 0.05 2.73 5.37 85.26 0.46 3.18 16 16 N -0.85 -46.44 13.93 21.82 0.30 -46.13 16 17 Si 0.97 42.81 24.68 68.60 1.69 44.51 16 18 H -0.26 -10.70 6.34 99.48 0.63 -10.07 16 19 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.23 -10.48 9.80 22.73 0.22 -10.26 16 22 C -0.06 -2.14 9.69 22.22 0.22 -1.92 16 23 C 0.08 2.18 2.02 45.08 0.09 2.27 16 24 H 0.08 2.82 5.07 -2.39 -0.01 2.81 16 25 C -0.18 -4.28 7.58 71.98 0.55 -3.74 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.60 6.59 -2.38 -0.02 1.58 16 29 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.07 5.71 -2.38 -0.01 1.05 16 32 H 0.10 1.55 7.96 -2.39 -0.02 1.53 16 33 H 0.04 1.00 7.11 -2.39 -0.02 0.99 16 34 H 0.09 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.11 3.83 7.80 -2.91 -0.02 3.80 16 36 H 0.10 4.51 4.42 -2.91 -0.01 4.50 16 37 H 0.29 14.47 8.30 -92.70 -0.77 13.70 16 38 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.08 1.81 5.10 -2.39 -0.01 1.80 16 41 H 0.06 1.46 6.78 -2.39 -0.02 1.45 16 42 H 0.05 1.25 6.80 -2.38 -0.02 1.23 16 Total: -1.00 -57.88 325.86 1.89 -55.99 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.93 Total: 24.96 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 4.00 Total: -53.83 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -3.60 Total: -63.79 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.69 Total: 44.51 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.14 Total: -7.84 kcal Total: -57.88 1.89 -55.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343550840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.914 kcal (2) G-P(sol) polarization free energy of solvation -57.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds