Wall clock time and date at job start Tue Mar 31 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81393 * 103.00545 * 2 1 4 4 C 1.52996 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.41933 * 62.31439 * 4 3 2 6 6 C 1.54905 * 110.37641 * 184.62555 * 4 3 2 7 7 C 1.55136 * 101.65517 * 155.89828 * 6 4 3 8 8 C 1.54316 * 103.02035 * 324.35083 * 7 6 4 9 9 N 1.47442 * 107.23195 * 22.28178 * 8 7 6 10 10 C 1.46902 * 111.00379 * 123.26203 * 9 8 7 11 11 C 1.50700 * 109.47077 * 69.86922 * 10 9 8 12 12 C 1.38635 * 119.75016 * 90.00831 * 11 10 9 13 13 C 1.37614 * 120.25051 * 179.69933 * 12 11 10 14 14 C 1.40719 * 119.74235 * 0.27218 * 13 12 11 15 15 C 1.41399 * 120.24181 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00238 * 335.28948 * 15 14 13 17 17 C 1.39942 * 119.99857 * 155.28388 * 15 14 13 18 18 N 1.30828 * 120.00153 * 342.23392 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 162.23135 * 17 15 14 20 20 H 1.48497 * 109.47389 * 94.66616 * 19 17 15 21 21 H 1.48504 * 109.47380 * 214.66797 * 19 17 15 22 22 H 1.48503 * 109.47148 * 334.66387 * 19 17 15 23 23 C 1.40710 * 119.51464 * 0.02562 * 14 13 12 24 24 C 1.37618 * 119.74455 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46916 * 59.99709 * 1 2 3 26 26 H 1.08991 * 109.47718 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47221 * 300.00331 * 1 2 3 28 28 H 1.09008 * 109.47089 * 59.99703 * 3 2 1 29 29 H 1.09001 * 109.47428 * 300.00398 * 3 2 1 30 30 H 1.09003 * 110.98751 * 37.80988 * 6 4 3 31 31 H 1.09000 * 111.02398 * 274.01012 * 6 4 3 32 32 H 1.08993 * 110.71045 * 205.96058 * 7 6 4 33 33 H 1.09003 * 110.85498 * 82.80074 * 7 6 4 34 34 H 1.08999 * 109.88664 * 262.87390 * 8 7 6 35 35 H 1.09005 * 109.88923 * 141.68433 * 8 7 6 36 36 H 1.09005 * 109.46885 * 309.87284 * 10 9 8 37 37 H 1.08991 * 109.47363 * 189.87365 * 10 9 8 38 38 H 1.08000 * 119.86943 * 359.97276 * 12 11 10 39 39 H 1.07991 * 120.13000 * 180.29057 * 13 12 11 40 40 H 0.97000 * 119.99938 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13173 * 180.02562 * 23 14 13 42 42 H 1.08001 * 119.87978 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1741 1.5109 -0.9037 6 6 4.1152 3.4387 0.1178 7 6 5.5421 3.3606 0.7216 8 6 5.4530 2.1449 1.6678 9 7 4.3314 1.3093 1.2011 10 6 4.7795 -0.0592 0.9109 11 6 5.1271 -0.7580 2.2001 12 6 4.1514 -1.4684 2.8823 13 6 4.4589 -2.1155 4.0572 14 6 5.7682 -2.0493 4.5686 15 6 6.0960 -2.7107 5.7746 16 1 5.3258 -2.9202 6.5022 17 6 7.4183 -3.0939 6.0254 18 7 8.2765 -3.1660 5.0406 19 14 7.9582 -3.5024 7.7664 20 1 7.8585 -4.9678 7.9847 21 1 9.3642 -3.0671 7.9637 22 1 7.0811 -2.7968 8.7351 23 6 6.7489 -1.3202 3.8710 24 6 6.4187 -0.6809 2.6979 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8032 2.2371 0.8900 29 1 1.8032 2.2371 -0.8899 30 1 3.4341 3.9589 0.7914 31 1 4.1314 3.9154 -0.8624 32 1 5.7745 4.2673 1.2798 33 1 6.2844 3.1887 -0.0579 34 1 5.2655 2.4815 2.6874 35 1 6.3815 1.5751 1.6279 36 1 5.6589 -0.0249 0.2677 37 1 3.9814 -0.6036 0.4063 38 1 3.1472 -1.5178 2.4877 39 1 3.6985 -2.6723 4.5845 40 1 9.1932 -3.4312 5.2145 41 1 7.7570 -1.2631 4.2542 42 1 7.1698 -0.1210 2.1605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343591129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:19 Heat of formation + Delta-G solvation = 14.810800 kcal Electronic energy + Delta-G solvation = -20955.068419 eV Core-core repulsion = 18025.307574 eV Total energy + Delta-G solvation = -2929.760845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.14576 -37.22987 -33.90589 -32.12149 -31.42391 -29.43945 -29.09273 -28.86415 -26.27965 -25.51049 -23.29355 -21.28674 -20.63895 -20.07506 -19.50295 -17.18780 -16.34617 -15.92550 -15.40888 -15.14837 -14.38198 -14.23716 -13.87563 -13.73762 -13.56125 -13.30567 -12.99943 -12.68796 -12.58212 -12.34672 -12.17689 -12.07074 -11.84129 -11.45766 -11.17803 -10.96075 -10.91413 -10.86691 -10.66798 -10.57851 -10.40811 -10.29181 -9.72402 -9.29455 -9.24224 -9.01063 -7.89116 -7.42485 -7.32019 -7.15900 -6.67767 -4.24997 1.79485 2.75118 2.82713 3.11058 3.15504 3.20572 3.26850 3.99323 4.25008 4.65474 4.72364 4.78848 5.06149 5.13435 5.16480 5.19855 5.26861 5.42163 5.58486 5.70190 5.71568 5.77361 5.83028 5.85910 5.94284 6.02090 6.15067 6.21252 6.41806 6.48112 6.56640 6.61976 7.05494 7.16760 7.33694 7.46853 7.49790 7.56305 7.74679 8.01931 8.16462 8.28464 8.42420 8.74650 9.00088 9.09457 10.26997 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.003971 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.331027 B = 7049.516246 C = 7985.045968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.232 6.232 3 C -0.068 4.068 4 C 0.082 3.918 5 H 0.058 0.942 6 C -0.117 4.117 7 C -0.142 4.142 8 C 0.045 3.955 9 N -0.511 5.511 10 C 0.116 3.884 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.229 4.229 14 C 0.112 3.888 15 C -0.465 4.465 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.167 4.167 24 C -0.096 4.096 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.020 0.980 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.278 0.722 41 H 0.114 0.886 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 10.574 -9.742 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S -0.006 6.006 3 C -0.217 4.217 4 C -0.028 4.028 5 H 0.076 0.924 6 C -0.157 4.157 7 C -0.181 4.181 8 C -0.082 4.082 9 N -0.236 5.236 10 C -0.011 4.011 11 C -0.201 4.201 12 C -0.083 4.083 13 C -0.249 4.249 14 C 0.110 3.890 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.186 4.186 24 C -0.115 4.115 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.219 9.568 -9.415 15.241 hybrid contribution 0.092 0.768 0.162 0.790 sum -7.127 10.336 -9.253 15.596 Atomic orbital electron populations 1.23462 0.97069 1.06023 1.04093 1.87319 1.04650 1.10752 1.97831 1.23409 0.99194 0.95004 1.04094 1.22275 0.92172 0.94469 0.93873 0.92426 1.22696 0.97068 0.95022 1.00923 1.22816 0.96500 0.99477 0.99293 1.22802 0.93853 0.92719 0.98863 1.63628 1.29253 1.02252 1.28440 1.21041 0.97143 0.87556 0.95370 1.18806 0.94248 1.08045 0.99035 1.20400 0.96659 0.96437 0.94836 1.20982 0.97543 1.07739 0.98625 1.17604 0.90873 0.88853 0.91711 1.19577 0.93549 1.33417 1.02939 0.90636 1.25876 0.96486 0.93241 0.98406 1.69842 1.05171 1.34784 1.32406 0.86375 0.78500 0.79238 0.83029 1.19673 1.20141 1.18489 1.21228 1.00212 1.00488 0.96666 1.20524 0.94471 0.99656 0.96806 0.91399 0.88525 0.90820 0.89675 0.90635 0.90610 0.91180 0.90978 0.91798 0.90737 0.91963 0.96149 0.90295 0.88870 0.89299 0.91091 0.86769 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.76 101.05 1.09 -0.34 16 2 S -0.23 -3.21 19.23 -107.50 -2.07 -5.28 16 3 C -0.07 -0.81 5.69 37.16 0.21 -0.60 16 4 C 0.08 1.06 2.65 -66.19 -0.18 0.88 16 5 H 0.06 0.77 7.81 -51.93 -0.41 0.36 16 6 C -0.12 -1.24 6.49 -24.60 -0.16 -1.40 16 7 C -0.14 -1.64 6.94 -24.91 -0.17 -1.82 16 8 C 0.05 0.69 6.25 -2.84 -0.02 0.68 16 9 N -0.51 -8.30 4.63 -224.82 -1.04 -9.34 16 10 C 0.12 2.14 4.46 -4.97 -0.02 2.12 16 11 C -0.20 -4.44 5.14 -104.33 -0.54 -4.98 16 12 C -0.06 -1.51 9.67 -39.66 -0.38 -1.89 16 13 C -0.23 -5.85 9.80 -38.87 -0.38 -6.23 16 14 C 0.11 3.07 5.57 -106.82 -0.60 2.47 16 15 C -0.46 -12.68 9.05 -37.74 -0.34 -13.02 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 18 N -0.80 -21.05 10.97 55.55 0.61 -20.44 16 19 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 24 C -0.10 -2.26 8.70 -39.66 -0.35 -2.60 16 25 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.08 1.04 8.13 -51.92 -0.42 0.62 16 29 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.04 5.46 -51.93 -0.28 0.75 16 36 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 37 H 0.08 1.46 5.11 -44.26 -0.23 1.23 16 38 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 41 H 0.11 3.13 6.18 -52.49 -0.32 2.80 16 42 H 0.08 1.73 6.87 -52.49 -0.36 1.37 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -28.17 343.72 -11.24 -39.40 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.63 Total: 6.02 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -2.26 Total: -29.59 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: -0.43 Total: -29.77 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.07 Total: -5.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.17 -11.24 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343591129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.213 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds