Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81393 * 103.00545 * 2 1 4 4 C 1.52996 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.41933 * 62.31439 * 4 3 2 6 6 C 1.54905 * 110.37641 * 184.62555 * 4 3 2 7 7 C 1.55136 * 101.65517 * 155.89828 * 6 4 3 8 8 C 1.54316 * 103.02035 * 324.35083 * 7 6 4 9 9 N 1.47442 * 107.23195 * 22.28178 * 8 7 6 10 10 C 1.46902 * 111.00379 * 123.26203 * 9 8 7 11 11 C 1.50700 * 109.47077 * 69.86922 * 10 9 8 12 12 C 1.38635 * 119.75016 * 90.00831 * 11 10 9 13 13 C 1.37614 * 120.25051 * 179.69933 * 12 11 10 14 14 C 1.40719 * 119.74235 * 0.27218 * 13 12 11 15 15 C 1.41399 * 120.24181 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00238 * 335.28948 * 15 14 13 17 17 C 1.39942 * 119.99857 * 155.28388 * 15 14 13 18 18 N 1.30828 * 120.00153 * 342.23392 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 162.23135 * 17 15 14 20 20 H 1.48497 * 109.47389 * 94.66616 * 19 17 15 21 21 H 1.48504 * 109.47380 * 214.66797 * 19 17 15 22 22 H 1.48503 * 109.47148 * 334.66387 * 19 17 15 23 23 C 1.40710 * 119.51464 * 0.02562 * 14 13 12 24 24 C 1.37618 * 119.74455 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46916 * 59.99709 * 1 2 3 26 26 H 1.08991 * 109.47718 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47221 * 300.00331 * 1 2 3 28 28 H 1.09008 * 109.47089 * 59.99703 * 3 2 1 29 29 H 1.09001 * 109.47428 * 300.00398 * 3 2 1 30 30 H 1.09003 * 110.98751 * 37.80988 * 6 4 3 31 31 H 1.09000 * 111.02398 * 274.01012 * 6 4 3 32 32 H 1.08993 * 110.71045 * 205.96058 * 7 6 4 33 33 H 1.09003 * 110.85498 * 82.80074 * 7 6 4 34 34 H 1.08999 * 109.88664 * 262.87390 * 8 7 6 35 35 H 1.09005 * 109.88923 * 141.68433 * 8 7 6 36 36 H 1.09005 * 109.46885 * 309.87284 * 10 9 8 37 37 H 1.08991 * 109.47363 * 189.87365 * 10 9 8 38 38 H 1.08000 * 119.86943 * 359.97276 * 12 11 10 39 39 H 1.07991 * 120.13000 * 180.29057 * 13 12 11 40 40 H 0.97000 * 119.99938 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13173 * 180.02562 * 23 14 13 42 42 H 1.08001 * 119.87978 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1741 1.5109 -0.9037 6 6 4.1152 3.4387 0.1178 7 6 5.5421 3.3606 0.7216 8 6 5.4530 2.1449 1.6678 9 7 4.3314 1.3093 1.2011 10 6 4.7795 -0.0592 0.9109 11 6 5.1271 -0.7580 2.2001 12 6 4.1514 -1.4684 2.8823 13 6 4.4589 -2.1155 4.0572 14 6 5.7682 -2.0493 4.5686 15 6 6.0960 -2.7107 5.7746 16 1 5.3258 -2.9202 6.5022 17 6 7.4183 -3.0939 6.0254 18 7 8.2765 -3.1660 5.0406 19 14 7.9582 -3.5024 7.7664 20 1 7.8585 -4.9678 7.9847 21 1 9.3642 -3.0671 7.9637 22 1 7.0811 -2.7968 8.7351 23 6 6.7489 -1.3202 3.8710 24 6 6.4187 -0.6809 2.6979 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8032 2.2371 0.8900 29 1 1.8032 2.2371 -0.8899 30 1 3.4341 3.9589 0.7914 31 1 4.1314 3.9154 -0.8624 32 1 5.7745 4.2673 1.2798 33 1 6.2844 3.1887 -0.0579 34 1 5.2655 2.4815 2.6874 35 1 6.3815 1.5751 1.6279 36 1 5.6589 -0.0249 0.2677 37 1 3.9814 -0.6036 0.4063 38 1 3.1472 -1.5178 2.4877 39 1 3.6985 -2.6723 4.5845 40 1 9.1932 -3.4312 5.2145 41 1 7.7570 -1.2631 4.2542 42 1 7.1698 -0.1210 2.1605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343591129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = 0.688126 kcal Electronic energy + Delta-G solvation = -20955.680824 eV Core-core repulsion = 18025.307574 eV Total energy + Delta-G solvation = -2930.373250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.41693 -39.01556 -35.75385 -33.63654 -32.43585 -31.21925 -30.94565 -29.70363 -27.92103 -26.64577 -24.93016 -22.96562 -22.11724 -21.42108 -20.96468 -19.17890 -17.42332 -17.14663 -17.00297 -16.48004 -16.05357 -15.69828 -15.33301 -15.08058 -14.74109 -14.36845 -14.22497 -14.06096 -13.77949 -13.66987 -13.63583 -13.46470 -13.33032 -13.13265 -12.79345 -12.59194 -12.34217 -12.12801 -12.00912 -11.96019 -11.64927 -11.58168 -11.41716 -11.15939 -10.96936 -10.49452 -9.31317 -9.19868 -9.07454 -8.60980 -8.47639 -6.29408 0.85989 0.99666 1.21551 1.37822 1.49291 1.54940 1.84365 2.22248 2.70889 3.16993 3.70476 3.76275 3.86277 4.07760 4.19295 4.24444 4.35348 4.38492 4.40239 4.41414 4.52021 4.58033 4.67955 4.73703 4.76124 4.91708 4.94682 4.96445 5.03039 5.07807 5.10948 5.17807 5.21046 5.37722 5.43739 5.53214 5.76532 6.01005 6.13324 6.16813 6.29238 6.37808 6.45078 6.74638 6.98528 7.09211 8.36593 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.003971 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.331027 B = 7049.516246 C = 7985.045968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.308 6.308 3 C -0.052 4.052 4 C 0.079 3.921 5 H 0.056 0.944 6 C -0.107 4.107 7 C -0.134 4.134 8 C 0.040 3.960 9 N -0.523 5.523 10 C 0.125 3.875 11 C -0.187 4.187 12 C -0.066 4.066 13 C -0.246 4.246 14 C 0.080 3.920 15 C -0.505 4.505 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.828 5.828 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.189 4.189 24 C -0.096 4.096 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.021 0.979 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 12.321 -10.866 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.082 6.082 3 C -0.200 4.200 4 C -0.030 4.030 5 H 0.075 0.925 6 C -0.146 4.146 7 C -0.172 4.172 8 C -0.088 4.088 9 N -0.248 5.248 10 C -0.003 4.003 11 C -0.189 4.189 12 C -0.085 4.085 13 C -0.266 4.266 14 C 0.078 3.922 15 C -0.535 4.535 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.455 5.455 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.208 4.208 24 C -0.115 4.115 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.123 11.327 -10.557 17.486 hybrid contribution 0.264 0.284 0.376 0.540 sum -7.859 11.612 -10.182 17.328 Atomic orbital electron populations 1.23433 0.93275 1.06714 1.05312 1.87498 1.08894 1.13776 1.98025 1.23387 0.98379 0.92926 1.05318 1.22409 0.92607 0.95820 0.92191 0.92547 1.22700 0.96078 0.93253 1.02578 1.22768 0.97640 0.98097 0.98726 1.22791 0.92664 0.94127 0.99207 1.63481 1.29446 1.01328 1.30532 1.20876 0.97461 0.88986 0.92937 1.19231 0.93274 1.06501 0.99851 1.20608 0.97737 0.95986 0.94172 1.21164 0.97206 1.08532 0.99652 1.17930 0.91872 0.89815 0.92579 1.19812 0.94812 1.35354 1.03499 0.91022 1.26729 0.95850 0.92489 1.02733 1.69893 1.05774 1.35249 1.34561 0.85228 0.78276 0.79257 0.77130 1.18702 1.18925 1.18378 1.21194 0.99520 1.01972 0.98131 1.20731 0.95644 0.99083 0.96012 0.89312 0.88157 0.90398 0.89921 0.87755 0.89956 0.88295 0.89400 0.91030 0.92381 0.93866 0.96093 0.89832 0.87210 0.89050 0.90280 0.88439 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 10.76 113.37 1.22 -0.96 16 2 S -0.31 -8.03 19.23 -56.49 -1.09 -9.12 16 3 C -0.05 -1.08 5.69 71.98 0.41 -0.67 16 4 C 0.08 1.83 2.65 45.38 0.12 1.95 16 5 H 0.06 1.35 7.81 -2.38 -0.02 1.33 16 6 C -0.11 -1.85 6.49 31.98 0.21 -1.64 16 7 C -0.13 -2.72 6.94 31.77 0.22 -2.50 16 8 C 0.04 1.19 6.25 86.65 0.54 1.73 16 9 N -0.52 -16.32 4.63 -865.20 -4.01 -20.33 16 10 C 0.12 4.54 4.46 85.56 0.38 4.92 16 11 C -0.19 -8.40 5.14 -19.67 -0.10 -8.50 16 12 C -0.07 -3.15 9.67 22.22 0.21 -2.93 16 13 C -0.25 -12.99 9.80 22.73 0.22 -12.77 16 14 C 0.08 4.59 5.57 -21.29 -0.12 4.47 16 15 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 16 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.91 5.14 85.26 0.44 2.34 16 18 N -0.83 -45.11 10.97 21.83 0.24 -44.87 16 19 Si 0.98 39.74 29.59 68.60 2.03 41.77 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 23 C -0.19 -10.42 8.70 22.73 0.20 -10.22 16 24 C -0.10 -4.64 8.70 22.22 0.19 -4.44 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.78 8.13 -2.39 -0.02 1.77 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.43 5.46 -2.38 -0.01 1.42 16 36 H 0.02 0.75 7.90 -2.38 -0.02 0.74 16 37 H 0.08 3.02 5.11 -7.27 -0.04 2.98 16 38 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.09 4.62 8.06 -2.92 -0.02 4.60 16 40 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 41 H 0.10 5.62 6.18 -2.91 -0.02 5.60 16 42 H 0.10 4.30 6.87 -2.91 -0.02 4.28 16 Total: -1.00 -63.50 343.72 2.50 -61.00 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.96 Total: 29.28 kcal Atomic # 6 Polarization: -62.10 SS G_CDS: 4.36 Total: -57.74 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -3.77 Total: -65.20 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.09 Total: -9.12 kcal Total: -63.50 2.50 -61.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343591129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.689 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds