Wall clock time and date at job start Tue Mar 31 2020 08:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47329 * 240.00201 * 3 2 1 5 5 H 1.48500 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00056 * 3 2 1 7 7 C 1.39947 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00293 * 196.51231 * 7 2 1 9 9 C 1.41401 * 119.99967 * 16.50919 * 7 2 1 10 10 C 1.40710 * 120.24530 * 205.09034 * 9 7 2 11 11 C 1.37626 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74630 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47279 * 87.99923 * 13 12 11 15 15 C 1.48558 * 111.00062 * 57.49403 * 14 13 12 16 16 H 1.09001 * 110.41428 * 319.85699 * 15 14 13 17 17 C 1.53004 * 110.41067 * 82.18504 * 15 14 13 18 18 O 1.42892 * 109.47376 * 64.99698 * 17 15 14 19 19 C 1.54377 * 104.59824 * 200.96118 * 15 14 13 20 20 C 1.54267 * 105.06042 * 23.85182 * 19 15 14 21 21 C 1.48565 * 111.00032 * 302.07973 * 14 13 12 22 22 H 1.08995 * 110.41142 * 40.14147 * 21 14 13 23 23 C 1.53000 * 110.40940 * 277.81819 * 21 14 13 24 24 O 1.42897 * 109.47137 * 295.39045 * 23 21 14 25 25 C 1.38636 * 120.50016 * 0.25439 * 12 11 10 26 26 C 1.37613 * 120.24927 * 359.44955 * 25 12 11 27 27 H 0.96992 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12872 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.87528 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.46762 * 327.99647 * 13 12 11 31 31 H 1.09000 * 109.46967 * 207.99666 * 13 12 11 32 32 H 1.09001 * 109.46749 * 304.99356 * 17 15 14 33 33 H 1.09001 * 109.47127 * 185.00123 * 17 15 14 34 34 H 0.96701 * 114.00127 * 179.97438 * 18 17 15 35 35 H 1.08999 * 110.32795 * 142.74875 * 19 15 14 36 36 H 1.09002 * 110.32534 * 264.96240 * 19 15 14 37 37 H 1.08999 * 110.32480 * 241.10635 * 20 19 15 38 38 H 1.09004 * 110.40750 * 118.93750 * 20 19 15 39 39 H 1.09003 * 109.47386 * 55.39033 * 23 21 14 40 40 H 1.09005 * 109.47268 * 175.38998 * 23 21 14 41 41 H 0.96703 * 114.00638 * 179.97438 * 24 23 21 42 42 H 1.08008 * 119.87028 * 179.70098 * 25 12 11 43 43 H 1.08001 * 120.12505 * 180.27768 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0546 -1.2313 0.2653 9 6 1.3448 -2.4111 -0.3491 10 6 1.8193 -3.6475 0.1266 11 6 1.1661 -4.8084 -0.2195 12 6 0.0451 -4.7628 -1.0339 13 6 -0.6611 -6.0410 -1.4063 14 7 -1.6656 -6.3613 -0.3835 15 6 -2.6390 -5.2500 -0.2268 16 1 -2.1288 -4.2880 -0.2758 17 6 -3.7224 -5.3337 -1.3040 18 8 -4.4902 -6.5240 -1.1159 19 6 -3.2536 -5.4655 1.1728 20 6 -2.2007 -6.2806 1.9518 21 6 -1.0385 -6.4888 0.9572 22 1 -0.2761 -5.7221 1.0948 23 6 -0.4303 -7.8819 1.1314 24 8 -1.4701 -8.8618 1.1087 25 6 -0.4277 -3.5508 -1.5129 26 6 0.2059 -2.3770 -1.1748 27 1 -0.4850 0.8400 0.0004 28 1 2.6931 -3.6854 0.7601 29 1 1.5282 -5.7584 0.1447 30 1 0.0646 -6.8518 -1.4693 31 1 -1.1521 -5.9168 -2.3715 32 1 -3.2550 -5.3545 -2.2885 33 1 -4.3758 -4.4643 -1.2304 34 1 -5.1974 -6.6425 -1.7646 35 1 -3.4278 -4.5070 1.6616 36 1 -4.1849 -6.0265 1.0950 37 1 -2.6153 -7.2416 2.2563 38 1 -1.8577 -5.7236 2.8237 39 1 0.2703 -8.0766 0.3194 40 1 0.0956 -7.9321 2.0849 41 1 -1.1566 -9.7706 1.2137 42 1 -1.2991 -3.5275 -2.1507 43 1 -0.1668 -1.4335 -1.5455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347268722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:30 Heat of formation + Delta-G solvation = -75.681147 kcal Electronic energy + Delta-G solvation = -24338.123207 eV Core-core repulsion = 20961.685466 eV Total energy + Delta-G solvation = -3376.437741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.63912 -37.32947 -36.55091 -35.47713 -33.89984 -32.05102 -30.62633 -29.46913 -29.12531 -26.81161 -25.82672 -23.51157 -23.16925 -21.28669 -20.41992 -19.49960 -18.98147 -17.40229 -17.21660 -17.11900 -15.40680 -15.25660 -14.96299 -14.83831 -14.32990 -14.24442 -13.78932 -13.64339 -13.04754 -13.00544 -12.80368 -12.42220 -12.08487 -11.99752 -11.78857 -11.55365 -11.30516 -11.13809 -10.98124 -10.71049 -10.63983 -10.53545 -10.36207 -10.10309 -9.97844 -9.82743 -9.68397 -9.57026 -9.45870 -9.19308 -7.74683 -7.51411 -7.36620 -6.82117 -4.42757 2.68852 2.95292 3.02094 3.04328 3.13932 3.87527 4.41748 4.56856 4.59609 4.63490 5.08958 5.24353 5.47318 5.54051 5.60321 5.63175 5.70406 5.72659 5.84498 5.91558 5.92634 6.03572 6.12385 6.24886 6.28378 6.35706 6.38758 6.42850 6.47212 6.69715 6.77967 6.86796 7.00173 7.17058 7.26656 7.43503 7.53205 7.64000 7.78406 7.93995 7.96803 7.97299 8.03636 8.21911 8.56167 8.82224 8.89303 10.11941 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.004601 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.145049 B = 6084.381105 C = 6604.188455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.227 4.227 11 C -0.081 4.081 12 C -0.248 4.248 13 C 0.098 3.902 14 N -0.475 5.475 15 C 0.053 3.947 16 H 0.087 0.913 17 C 0.095 3.905 18 O -0.555 6.555 19 C -0.113 4.113 20 C -0.112 4.112 21 C 0.050 3.950 22 H 0.087 0.913 23 C 0.095 3.905 24 O -0.554 6.554 25 C -0.091 4.091 26 C -0.163 4.163 27 H 0.281 0.719 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.364 0.636 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.364 0.636 42 H 0.084 0.916 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -8.901 -0.068 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.246 4.246 11 C -0.100 4.100 12 C -0.251 4.251 13 C -0.030 4.030 14 N -0.198 5.198 15 C -0.055 4.055 16 H 0.105 0.895 17 C 0.016 3.984 18 O -0.358 6.358 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.058 4.058 22 H 0.105 0.895 23 C 0.016 3.984 24 O -0.357 6.357 25 C -0.110 4.110 26 C -0.183 4.183 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.209 0.791 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.209 0.791 42 H 0.102 0.898 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.111 -8.780 0.190 10.161 hybrid contribution 0.920 1.308 -0.196 1.611 sum -4.190 -7.472 -0.006 8.567 Atomic orbital electron populations 1.69799 1.07562 1.29346 1.35153 1.25902 0.94743 1.01301 0.92202 0.86365 0.80155 0.80209 0.80004 1.18813 1.20295 1.18994 1.19578 0.97638 0.91173 1.40818 0.90526 1.17615 0.91123 0.91985 0.88256 1.20976 1.03517 0.93060 1.07064 1.20347 0.95321 0.96218 0.98145 1.19673 1.01398 0.94650 1.09374 1.21016 0.92992 0.94035 0.94946 1.65734 1.12406 1.37672 1.03941 1.22841 0.92541 0.95805 0.94343 0.89509 1.22005 0.92279 0.86264 0.97810 1.86634 1.48921 1.43626 1.56596 1.22162 0.99351 0.99317 0.94249 1.22161 0.95446 1.00465 0.96980 1.22891 0.97400 0.95071 0.90449 0.89543 1.22008 0.89127 0.88864 0.98369 1.86645 1.34820 1.17625 1.96598 1.20524 0.98241 0.92823 0.99457 1.21330 0.99178 0.96691 1.01080 0.90790 0.89123 0.89726 0.91893 0.91805 0.94031 0.94075 0.79091 0.92408 0.90471 0.90503 0.92497 0.94044 0.94170 0.79085 0.89759 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.07 10.92 55.55 0.61 -19.46 16 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.04 9.06 -37.74 -0.34 -12.38 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.11 2.93 5.57 -106.82 -0.60 2.33 16 10 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C -0.08 -1.74 7.48 -39.66 -0.30 -2.04 16 12 C -0.25 -5.15 4.00 -104.33 -0.42 -5.57 16 13 C 0.10 1.77 5.52 -4.98 -0.03 1.75 16 14 N -0.47 -8.45 4.95 -215.78 -1.07 -9.51 16 15 C 0.05 0.93 2.47 -66.07 -0.16 0.77 16 16 H 0.09 1.75 5.02 -51.93 -0.26 1.49 16 17 C 0.09 1.44 6.92 37.16 0.26 1.70 16 18 O -0.55 -8.18 12.33 -35.23 -0.43 -8.62 16 19 C -0.11 -1.89 6.44 -25.35 -0.16 -2.06 16 20 C -0.11 -1.86 6.45 -25.35 -0.16 -2.02 16 21 C 0.05 0.86 2.40 -66.07 -0.16 0.70 16 22 H 0.09 1.66 4.69 -51.93 -0.24 1.42 16 23 C 0.09 1.38 6.91 37.16 0.26 1.64 16 24 O -0.55 -7.97 12.34 -35.23 -0.43 -8.41 16 25 C -0.09 -2.03 7.61 -39.66 -0.30 -2.33 16 26 C -0.16 -4.10 8.69 -38.87 -0.34 -4.44 16 27 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 29 H 0.08 1.62 7.73 -52.49 -0.41 1.21 16 30 H 0.06 1.10 7.30 -51.93 -0.38 0.72 16 31 H 0.06 1.13 7.28 -51.93 -0.38 0.75 16 32 H 0.04 0.62 7.33 -51.93 -0.38 0.24 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.36 3.56 9.12 45.56 0.42 3.97 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.29 6.86 -51.93 -0.36 0.94 16 37 H 0.08 1.27 6.88 -51.93 -0.36 0.91 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.59 7.33 -51.93 -0.38 0.21 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.36 3.42 9.12 45.56 0.42 3.83 16 42 H 0.08 1.72 8.00 -52.48 -0.42 1.30 16 43 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -29.21 335.56 -8.94 -38.15 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -4.72 Total: 15.40 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.92 Total: -25.94 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: -0.46 Total: -28.98 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.87 Total: -17.03 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.21 -8.94 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.530 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds