Wall clock time and date at job start Tue Mar 31 2020 08:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47329 * 240.00201 * 3 2 1 5 5 H 1.48500 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00056 * 3 2 1 7 7 C 1.39947 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00293 * 196.51231 * 7 2 1 9 9 C 1.41401 * 119.99967 * 16.50919 * 7 2 1 10 10 C 1.40710 * 120.24530 * 205.09034 * 9 7 2 11 11 C 1.37626 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74630 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47279 * 87.99923 * 13 12 11 15 15 C 1.48558 * 111.00062 * 57.49403 * 14 13 12 16 16 H 1.09001 * 110.41428 * 319.85699 * 15 14 13 17 17 C 1.53004 * 110.41067 * 82.18504 * 15 14 13 18 18 O 1.42892 * 109.47376 * 64.99698 * 17 15 14 19 19 C 1.54377 * 104.59824 * 200.96118 * 15 14 13 20 20 C 1.54267 * 105.06042 * 23.85182 * 19 15 14 21 21 C 1.48565 * 111.00032 * 302.07973 * 14 13 12 22 22 H 1.08995 * 110.41142 * 40.14147 * 21 14 13 23 23 C 1.53000 * 110.40940 * 277.81819 * 21 14 13 24 24 O 1.42897 * 109.47137 * 295.39045 * 23 21 14 25 25 C 1.38636 * 120.50016 * 0.25439 * 12 11 10 26 26 C 1.37613 * 120.24927 * 359.44955 * 25 12 11 27 27 H 0.96992 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12872 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.87528 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.46762 * 327.99647 * 13 12 11 31 31 H 1.09000 * 109.46967 * 207.99666 * 13 12 11 32 32 H 1.09001 * 109.46749 * 304.99356 * 17 15 14 33 33 H 1.09001 * 109.47127 * 185.00123 * 17 15 14 34 34 H 0.96701 * 114.00127 * 179.97438 * 18 17 15 35 35 H 1.08999 * 110.32795 * 142.74875 * 19 15 14 36 36 H 1.09002 * 110.32534 * 264.96240 * 19 15 14 37 37 H 1.08999 * 110.32480 * 241.10635 * 20 19 15 38 38 H 1.09004 * 110.40750 * 118.93750 * 20 19 15 39 39 H 1.09003 * 109.47386 * 55.39033 * 23 21 14 40 40 H 1.09005 * 109.47268 * 175.38998 * 23 21 14 41 41 H 0.96703 * 114.00638 * 179.97438 * 24 23 21 42 42 H 1.08008 * 119.87028 * 179.70098 * 25 12 11 43 43 H 1.08001 * 120.12505 * 180.27768 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0546 -1.2313 0.2653 9 6 1.3448 -2.4111 -0.3491 10 6 1.8193 -3.6475 0.1266 11 6 1.1661 -4.8084 -0.2195 12 6 0.0451 -4.7628 -1.0339 13 6 -0.6611 -6.0410 -1.4063 14 7 -1.6656 -6.3613 -0.3835 15 6 -2.6390 -5.2500 -0.2268 16 1 -2.1288 -4.2880 -0.2758 17 6 -3.7224 -5.3337 -1.3040 18 8 -4.4902 -6.5240 -1.1159 19 6 -3.2536 -5.4655 1.1728 20 6 -2.2007 -6.2806 1.9518 21 6 -1.0385 -6.4888 0.9572 22 1 -0.2761 -5.7221 1.0948 23 6 -0.4303 -7.8819 1.1314 24 8 -1.4701 -8.8618 1.1087 25 6 -0.4277 -3.5508 -1.5129 26 6 0.2059 -2.3770 -1.1748 27 1 -0.4850 0.8400 0.0004 28 1 2.6931 -3.6854 0.7601 29 1 1.5282 -5.7584 0.1447 30 1 0.0646 -6.8518 -1.4693 31 1 -1.1521 -5.9168 -2.3715 32 1 -3.2550 -5.3545 -2.2885 33 1 -4.3758 -4.4643 -1.2304 34 1 -5.1974 -6.6425 -1.7646 35 1 -3.4278 -4.5070 1.6616 36 1 -4.1849 -6.0265 1.0950 37 1 -2.6153 -7.2416 2.2563 38 1 -1.8577 -5.7236 2.8237 39 1 0.2703 -8.0766 0.3194 40 1 0.0956 -7.9321 2.0849 41 1 -1.1566 -9.7706 1.2137 42 1 -1.2991 -3.5275 -2.1507 43 1 -0.1668 -1.4335 -1.5455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347268722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:27 Heat of formation + Delta-G solvation = -97.697100 kcal Electronic energy + Delta-G solvation = -24339.077891 eV Core-core repulsion = 20961.685466 eV Total energy + Delta-G solvation = -3377.392425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.07939 -39.00256 -37.67007 -36.70546 -35.63625 -33.62626 -31.99874 -31.15624 -30.84455 -28.19711 -27.36693 -25.12653 -24.40403 -23.06311 -22.12277 -20.86748 -20.42983 -19.23463 -18.42433 -18.23494 -17.19685 -16.63711 -16.35358 -16.13346 -15.82689 -15.66023 -15.32990 -15.28508 -14.45864 -14.34923 -14.16856 -13.99313 -13.83323 -13.33217 -13.24426 -13.11716 -12.91961 -12.76032 -12.52245 -12.34311 -12.21449 -11.90405 -11.79813 -11.59411 -11.36969 -11.31244 -11.25616 -11.01817 -10.79187 -10.68253 -9.35148 -9.22905 -9.16985 -8.64660 -6.35723 0.92849 1.10712 1.36100 1.46605 1.50863 2.18639 2.69126 3.13131 3.49869 3.52217 3.69494 3.83485 3.99423 4.19352 4.25283 4.35294 4.38169 4.45893 4.48624 4.52183 4.55992 4.62338 4.66293 4.76051 4.78602 4.98711 5.03069 5.04060 5.06761 5.13544 5.15057 5.31560 5.34305 5.43122 5.47332 5.67652 5.92758 6.00768 6.08325 6.25752 6.26968 6.37393 6.68450 6.92767 7.01592 7.06771 7.09920 8.31329 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.004601 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.145049 B = 6084.381105 C = 6604.188455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.243 4.243 11 C -0.077 4.077 12 C -0.231 4.231 13 C 0.103 3.897 14 N -0.470 5.470 15 C 0.047 3.953 16 H 0.058 0.942 17 C 0.100 3.900 18 O -0.569 6.569 19 C -0.111 4.111 20 C -0.111 4.111 21 C 0.043 3.957 22 H 0.065 0.935 23 C 0.100 3.900 24 O -0.571 6.571 25 C -0.089 4.089 26 C -0.187 4.187 27 H 0.287 0.713 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.387 0.613 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.387 0.613 42 H 0.101 0.899 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -10.314 -0.226 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.262 4.262 11 C -0.095 4.095 12 C -0.234 4.234 13 C -0.025 4.025 14 N -0.193 5.193 15 C -0.061 4.061 16 H 0.076 0.924 17 C 0.022 3.978 18 O -0.375 6.375 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.065 4.065 22 H 0.082 0.918 23 C 0.022 3.978 24 O -0.377 6.377 25 C -0.108 4.108 26 C -0.207 4.207 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.235 0.765 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.235 0.765 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.500 -10.233 0.025 11.617 hybrid contribution 0.935 1.555 -0.141 1.820 sum -4.565 -8.678 -0.116 9.806 Atomic orbital electron populations 1.69858 1.08901 1.30490 1.35887 1.26704 0.95485 1.04351 0.91249 0.85294 0.78829 0.75850 0.80005 1.18551 1.19170 1.18465 1.19815 0.97806 0.92518 1.43055 0.90898 1.17946 0.91985 0.93005 0.89164 1.21161 1.04128 0.93392 1.07558 1.20619 0.94954 0.96545 0.97418 1.20009 1.00528 0.95386 1.07451 1.21038 0.93237 0.92735 0.95477 1.65814 1.12047 1.37227 1.04190 1.22847 0.93203 0.94335 0.95762 0.92411 1.21866 0.92031 0.87072 0.96817 1.86558 1.49825 1.43225 1.57918 1.22148 0.99478 0.99340 0.93972 1.22152 0.95215 1.00527 0.96964 1.22948 0.96984 0.96365 0.90202 0.91781 1.21899 0.88899 0.87480 0.99542 1.86571 1.35263 1.19212 1.96680 1.20710 0.98274 0.92555 0.99243 1.21267 1.00067 0.97006 1.02363 0.90214 0.88805 0.86962 0.90509 0.91031 0.93776 0.92853 0.76464 0.92595 0.90273 0.90220 0.92254 0.93572 0.92364 0.76451 0.88139 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.14 10.92 21.83 0.24 -42.90 16 2 C 0.04 1.86 5.16 85.26 0.44 2.30 16 3 Si 0.98 38.27 29.59 68.60 2.03 40.30 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.50 -27.18 9.06 23.46 0.21 -26.97 16 8 H 0.07 3.82 7.90 -2.91 -0.02 3.80 16 9 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 10 C -0.24 -11.75 9.80 22.73 0.22 -11.53 16 11 C -0.08 -3.21 7.48 22.22 0.17 -3.05 16 12 C -0.23 -9.36 4.00 -19.67 -0.08 -9.43 16 13 C 0.10 3.50 5.52 85.56 0.47 3.97 16 14 N -0.47 -15.75 4.95 -836.60 -4.14 -19.88 16 15 C 0.05 1.60 2.47 45.06 0.11 1.71 16 16 H 0.06 2.32 5.02 -2.39 -0.01 2.31 16 17 C 0.10 2.86 6.92 71.98 0.50 3.36 16 18 O -0.57 -15.33 12.33 -148.98 -1.84 -17.17 16 19 C -0.11 -3.62 6.44 31.49 0.20 -3.41 16 20 C -0.11 -3.49 6.45 31.49 0.20 -3.29 16 21 C 0.04 1.41 2.40 45.06 0.11 1.52 16 22 H 0.06 2.38 4.69 -2.39 -0.01 2.37 16 23 C 0.10 2.63 6.91 71.98 0.50 3.12 16 24 O -0.57 -14.65 12.34 -148.98 -1.84 -16.48 16 25 C -0.09 -3.97 7.61 22.22 0.17 -3.80 16 26 C -0.19 -9.74 8.69 22.73 0.20 -9.54 16 27 H 0.29 13.63 8.30 -92.71 -0.77 12.87 16 28 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.11 4.04 7.73 -2.91 -0.02 4.02 16 30 H 0.08 2.43 7.30 -2.39 -0.02 2.41 16 31 H 0.07 2.35 7.28 -2.39 -0.02 2.33 16 32 H 0.04 1.23 7.33 -2.39 -0.02 1.21 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.39 6.46 9.12 -74.06 -0.68 5.79 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.53 6.86 -2.39 -0.02 2.51 16 37 H 0.08 2.47 6.88 -2.39 -0.02 2.46 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.05 1.17 7.33 -2.39 -0.02 1.15 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.39 5.95 9.12 -74.06 -0.68 5.28 16 42 H 0.10 4.07 8.00 -2.91 -0.02 4.05 16 43 H 0.10 5.40 6.16 -2.91 -0.02 5.39 16 Total: -1.00 -63.53 335.56 -2.55 -66.09 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.31 Total: 40.86 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 3.30 Total: -50.80 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -3.90 Total: -62.79 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -3.67 Total: -33.65 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.53 -2.55 -66.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.611 kcal (2) G-P(sol) polarization free energy of solvation -63.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds