Wall clock time and date at job start Tue Mar 31 2020 08:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48510 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47266 * 300.00132 * 3 2 1 6 6 H 1.48505 * 109.46767 * 60.00441 * 3 2 1 7 7 C 1.39948 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99582 * 195.41018 * 7 2 1 9 9 C 1.41392 * 119.99712 * 15.41865 * 7 2 1 10 10 C 1.40720 * 120.23864 * 206.87667 * 9 7 2 11 11 C 1.37620 * 119.74160 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.24934 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75060 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47388 * 89.99156 * 13 12 11 15 15 C 1.47843 * 110.99596 * 55.94494 * 14 13 12 16 16 H 1.08990 * 110.37713 * 27.53430 * 15 14 13 17 17 C 1.53001 * 110.37429 * 265.19245 * 15 14 13 18 18 O 1.42898 * 109.47072 * 295.00312 * 17 15 14 19 19 C 1.54907 * 104.79359 * 146.36441 * 15 14 13 20 20 C 1.55141 * 101.65500 * 322.92988 * 19 15 14 21 21 C 1.47442 * 111.00179 * 176.78709 * 14 13 12 22 22 H 1.09005 * 109.88774 * 117.17434 * 21 14 13 23 23 C 1.53002 * 109.88550 * 356.15123 * 21 14 13 24 24 O 1.42897 * 109.47321 * 293.32780 * 23 21 14 25 25 C 1.38636 * 120.50117 * 0.26643 * 12 11 10 26 26 C 1.37616 * 120.24707 * 359.45195 * 25 12 11 27 27 H 0.97001 * 119.99985 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.13080 * 359.95097 * 10 9 7 29 29 H 1.08002 * 119.87610 * 179.97438 * 11 10 9 30 30 H 1.08992 * 109.47313 * 209.99784 * 13 12 11 31 31 H 1.09007 * 109.46796 * 329.99327 * 13 12 11 32 32 H 1.08994 * 109.47106 * 55.00059 * 17 15 14 33 33 H 1.08994 * 109.47334 * 175.00499 * 17 15 14 34 34 H 0.96708 * 114.00041 * 179.97438 * 18 17 15 35 35 H 1.08996 * 110.99205 * 204.83549 * 19 15 14 36 36 H 1.09001 * 110.99376 * 81.02324 * 19 15 14 37 37 H 1.09004 * 110.70143 * 277.27086 * 20 19 15 38 38 H 1.08994 * 110.85328 * 154.10697 * 20 19 15 39 39 H 1.09001 * 109.47285 * 53.33223 * 23 21 14 40 40 H 1.09007 * 109.46746 * 173.33196 * 23 21 14 41 41 H 0.96693 * 114.00631 * 180.02562 * 24 23 21 42 42 H 1.08000 * 119.87349 * 179.71085 * 25 12 11 43 43 H 1.07998 * 120.12573 * 180.26872 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0588 -1.2289 0.2480 9 6 1.3390 -2.4143 -0.3266 10 6 1.7994 -3.6422 0.1836 11 6 1.1403 -4.8062 -0.1400 12 6 0.0271 -4.7720 -0.9656 13 6 -0.6864 -6.0533 -1.3122 14 7 -1.7350 -6.3146 -0.3171 15 6 -2.6682 -5.1721 -0.2185 16 1 -2.7054 -4.6299 -1.1632 17 6 -2.2477 -4.2373 0.9174 18 8 -2.3694 -4.9207 2.1665 19 6 -4.0448 -5.8115 0.0909 20 6 -3.9887 -7.1052 -0.7635 21 6 -2.5060 -7.5218 -0.6663 22 1 -2.3809 -8.2786 0.1081 23 6 -2.0305 -8.0716 -2.0127 24 8 -2.3617 -7.1454 -3.0492 25 6 -0.4316 -3.5686 -1.4788 26 6 0.2084 -2.3917 -1.1640 27 1 -0.4850 0.8401 0.0004 28 1 2.6668 -3.6712 0.8263 29 1 1.4920 -5.7499 0.2501 30 1 -1.1377 -5.9621 -2.3001 31 1 0.0269 -6.8776 -1.3133 32 1 -1.2123 -3.9302 0.7707 33 1 -2.8908 -3.3573 0.9207 34 1 -2.1184 -4.3871 2.9329 35 1 -4.8584 -5.1635 -0.2349 36 1 -4.1364 -6.0474 1.1511 37 1 -4.2634 -6.8964 -1.7974 38 1 -4.6340 -7.8763 -0.3429 39 1 -0.9504 -8.2154 -1.9854 40 1 -2.5193 -9.0260 -2.2085 41 1 -2.0896 -7.4297 -3.9325 42 1 -1.2970 -3.5543 -2.1248 43 1 -0.1533 -1.4549 -1.5614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347268726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:42 Heat of formation + Delta-G solvation = -66.946983 kcal Electronic energy + Delta-G solvation = -24525.399117 eV Core-core repulsion = 21149.340117 eV Total energy + Delta-G solvation = -3376.059000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -39.82437 -37.43569 -36.50484 -35.24305 -33.90200 -31.98559 -30.65402 -29.31450 -29.17291 -26.62399 -25.86531 -23.66852 -22.81244 -21.11739 -20.23794 -20.03980 -18.78173 -17.61343 -17.25442 -16.83442 -15.64123 -15.30088 -15.16340 -14.64049 -14.20712 -13.99194 -13.69436 -13.32511 -13.19270 -12.83378 -12.74880 -12.40956 -12.04716 -11.97316 -11.84715 -11.68298 -11.39016 -11.10202 -10.96061 -10.83809 -10.64048 -10.48739 -10.35375 -10.22096 -10.03500 -9.82546 -9.48103 -9.29087 -9.20515 -8.98828 -7.62060 -7.40019 -7.18206 -6.72248 -4.32560 2.76091 3.07886 3.10362 3.13547 3.19176 3.95171 4.23797 4.39537 4.69313 4.90572 5.00436 5.11731 5.21147 5.35387 5.42752 5.62338 5.73536 5.78958 5.92560 5.99292 6.04384 6.13279 6.15619 6.21996 6.32926 6.40255 6.46267 6.54974 6.56812 6.73827 6.79471 6.98507 7.11362 7.30150 7.40903 7.56622 7.61792 7.65172 7.72496 7.94803 8.08653 8.19525 8.32405 8.33919 8.67110 8.93010 9.00427 10.22558 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.004582 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.478257 B = 6109.104157 C = 6495.303170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.226 4.226 11 C -0.074 4.074 12 C -0.200 4.200 13 C 0.090 3.910 14 N -0.502 5.502 15 C 0.090 3.910 16 H 0.065 0.935 17 C 0.085 3.915 18 O -0.567 6.567 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.072 3.928 22 H 0.089 0.911 23 C 0.057 3.943 24 O -0.560 6.560 25 C -0.096 4.096 26 C -0.162 4.162 27 H 0.278 0.722 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.367 0.633 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.372 0.628 42 H 0.083 0.917 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -10.070 -2.772 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.108 3.892 10 C -0.246 4.246 11 C -0.093 4.093 12 C -0.201 4.201 13 C -0.036 4.036 14 N -0.226 5.226 15 C -0.018 4.018 16 H 0.083 0.917 17 C 0.007 3.993 18 O -0.371 6.371 19 C -0.162 4.162 20 C -0.172 4.172 21 C -0.036 4.036 22 H 0.107 0.893 23 C -0.022 4.022 24 O -0.366 6.366 25 C -0.115 4.115 26 C -0.182 4.182 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.212 0.788 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.219 0.781 42 H 0.101 0.899 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.607 -10.148 -2.182 12.304 hybrid contribution 0.419 1.066 -0.796 1.395 sum -6.188 -9.082 -2.978 11.386 Atomic orbital electron populations 1.69814 1.07457 1.28873 1.36326 1.25856 0.94720 1.01091 0.92359 0.86314 0.80994 0.81228 0.78477 1.18500 1.19814 1.20076 1.19601 0.97229 0.91045 1.41657 0.90622 1.17602 0.91181 0.91974 0.88399 1.21002 1.03741 0.93185 1.06656 1.20361 0.95472 0.96281 0.97160 1.18974 1.00353 0.93140 1.07661 1.21406 0.92648 0.95336 0.94184 1.63807 1.11081 1.01390 1.46338 1.22412 0.90382 0.92244 0.96747 0.91671 1.22327 1.01988 0.91960 0.82989 1.86404 1.90712 1.43982 1.16025 1.22659 0.96613 0.95972 1.00931 1.22729 0.95802 0.97819 1.00816 1.22575 0.93084 0.94812 0.93151 0.89286 1.22742 0.99423 0.91344 0.88664 1.86592 1.84180 1.47310 1.18500 1.20556 0.98319 0.92873 0.99781 1.21252 0.99330 0.96422 1.01155 0.91111 0.89262 0.89652 0.91592 0.92682 0.90293 0.94995 0.78770 0.91946 0.89938 0.90649 0.91913 0.92573 0.93953 0.78077 0.89924 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.44 10.98 55.55 0.61 -19.83 16 2 C 0.08 1.91 5.17 -17.34 -0.09 1.82 16 3 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.31 9.06 -37.74 -0.34 -12.65 16 8 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 9 C 0.11 2.92 5.55 -106.83 -0.59 2.32 16 10 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 11 C -0.07 -1.67 9.37 -39.66 -0.37 -2.04 16 12 C -0.20 -4.28 3.45 -104.33 -0.36 -4.64 16 13 C 0.09 1.64 3.85 -4.97 -0.02 1.62 16 14 N -0.50 -8.83 4.90 -216.96 -1.06 -9.90 16 15 C 0.09 1.62 2.19 -66.19 -0.14 1.48 16 16 H 0.07 1.26 6.17 -51.93 -0.32 0.94 16 17 C 0.09 1.66 6.41 37.16 0.24 1.90 16 18 O -0.57 -10.32 12.40 -35.23 -0.44 -10.75 16 19 C -0.12 -1.91 6.43 -24.59 -0.16 -2.06 16 20 C -0.13 -1.81 6.35 -24.91 -0.16 -1.97 16 21 C 0.07 1.04 3.85 -66.73 -0.26 0.78 16 22 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 23 C 0.06 0.68 6.00 37.16 0.22 0.90 16 24 O -0.56 -6.91 9.70 -35.23 -0.34 -7.25 16 25 C -0.10 -2.19 7.12 -39.66 -0.28 -2.47 16 26 C -0.16 -4.12 8.68 -38.87 -0.34 -4.46 16 27 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 28 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.07 1.18 5.01 -51.93 -0.26 0.92 16 31 H 0.05 0.96 6.74 -51.93 -0.35 0.61 16 32 H 0.08 1.80 5.02 -51.93 -0.26 1.54 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.37 5.41 9.12 45.56 0.42 5.83 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.34 7.05 -51.93 -0.37 0.97 16 37 H 0.07 1.05 6.88 -51.93 -0.36 0.69 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.68 6.25 -51.93 -0.32 0.35 16 40 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.37 2.96 9.12 45.56 0.42 3.37 16 42 H 0.08 1.78 7.09 -52.49 -0.37 1.41 16 43 H 0.11 3.04 6.25 -52.49 -0.33 2.71 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -29.00 329.87 -8.94 -37.94 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -4.62 Total: 16.54 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -3.03 Total: -25.39 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: -0.45 Total: -29.73 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.78 Total: -18.00 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.00 -8.94 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.012 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds