Wall clock time and date at job start Tue Mar 31 2020 08:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48510 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47266 * 300.00132 * 3 2 1 6 6 H 1.48505 * 109.46767 * 60.00441 * 3 2 1 7 7 C 1.39948 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99582 * 195.41018 * 7 2 1 9 9 C 1.41392 * 119.99712 * 15.41865 * 7 2 1 10 10 C 1.40720 * 120.23864 * 206.87667 * 9 7 2 11 11 C 1.37620 * 119.74160 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.24934 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75060 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47388 * 89.99156 * 13 12 11 15 15 C 1.47843 * 110.99596 * 55.94494 * 14 13 12 16 16 H 1.08990 * 110.37713 * 27.53430 * 15 14 13 17 17 C 1.53001 * 110.37429 * 265.19245 * 15 14 13 18 18 O 1.42898 * 109.47072 * 295.00312 * 17 15 14 19 19 C 1.54907 * 104.79359 * 146.36441 * 15 14 13 20 20 C 1.55141 * 101.65500 * 322.92988 * 19 15 14 21 21 C 1.47442 * 111.00179 * 176.78709 * 14 13 12 22 22 H 1.09005 * 109.88774 * 117.17434 * 21 14 13 23 23 C 1.53002 * 109.88550 * 356.15123 * 21 14 13 24 24 O 1.42897 * 109.47321 * 293.32780 * 23 21 14 25 25 C 1.38636 * 120.50117 * 0.26643 * 12 11 10 26 26 C 1.37616 * 120.24707 * 359.45195 * 25 12 11 27 27 H 0.97001 * 119.99985 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.13080 * 359.95097 * 10 9 7 29 29 H 1.08002 * 119.87610 * 179.97438 * 11 10 9 30 30 H 1.08992 * 109.47313 * 209.99784 * 13 12 11 31 31 H 1.09007 * 109.46796 * 329.99327 * 13 12 11 32 32 H 1.08994 * 109.47106 * 55.00059 * 17 15 14 33 33 H 1.08994 * 109.47334 * 175.00499 * 17 15 14 34 34 H 0.96708 * 114.00041 * 179.97438 * 18 17 15 35 35 H 1.08996 * 110.99205 * 204.83549 * 19 15 14 36 36 H 1.09001 * 110.99376 * 81.02324 * 19 15 14 37 37 H 1.09004 * 110.70143 * 277.27086 * 20 19 15 38 38 H 1.08994 * 110.85328 * 154.10697 * 20 19 15 39 39 H 1.09001 * 109.47285 * 53.33223 * 23 21 14 40 40 H 1.09007 * 109.46746 * 173.33196 * 23 21 14 41 41 H 0.96693 * 114.00631 * 180.02562 * 24 23 21 42 42 H 1.08000 * 119.87349 * 179.71085 * 25 12 11 43 43 H 1.07998 * 120.12573 * 180.26872 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0588 -1.2289 0.2480 9 6 1.3390 -2.4143 -0.3266 10 6 1.7994 -3.6422 0.1836 11 6 1.1403 -4.8062 -0.1400 12 6 0.0271 -4.7720 -0.9656 13 6 -0.6864 -6.0533 -1.3122 14 7 -1.7350 -6.3146 -0.3171 15 6 -2.6682 -5.1721 -0.2185 16 1 -2.7054 -4.6299 -1.1632 17 6 -2.2477 -4.2373 0.9174 18 8 -2.3694 -4.9207 2.1665 19 6 -4.0448 -5.8115 0.0909 20 6 -3.9887 -7.1052 -0.7635 21 6 -2.5060 -7.5218 -0.6663 22 1 -2.3809 -8.2786 0.1081 23 6 -2.0305 -8.0716 -2.0127 24 8 -2.3617 -7.1454 -3.0492 25 6 -0.4316 -3.5686 -1.4788 26 6 0.2084 -2.3917 -1.1640 27 1 -0.4850 0.8401 0.0004 28 1 2.6668 -3.6712 0.8263 29 1 1.4920 -5.7499 0.2501 30 1 -1.1377 -5.9621 -2.3001 31 1 0.0269 -6.8776 -1.3133 32 1 -1.2123 -3.9302 0.7707 33 1 -2.8908 -3.3573 0.9207 34 1 -2.1184 -4.3871 2.9329 35 1 -4.8584 -5.1635 -0.2349 36 1 -4.1364 -6.0474 1.1511 37 1 -4.2634 -6.8964 -1.7974 38 1 -4.6340 -7.8763 -0.3429 39 1 -0.9504 -8.2154 -1.9854 40 1 -2.5193 -9.0260 -2.2085 41 1 -2.0896 -7.4297 -3.9325 42 1 -1.2970 -3.5543 -2.1248 43 1 -0.1533 -1.4549 -1.5614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347268726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:39 Heat of formation + Delta-G solvation = -88.673011 kcal Electronic energy + Delta-G solvation = -24526.341228 eV Core-core repulsion = 21149.340117 eV Total energy + Delta-G solvation = -3377.001111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -41.13399 -39.16373 -37.74606 -36.50032 -35.70785 -33.53124 -31.96801 -31.06862 -30.90019 -28.09768 -27.35885 -25.14156 -24.20603 -22.94596 -21.81648 -21.49071 -20.12738 -19.17962 -18.56039 -18.30438 -17.16210 -16.80771 -16.52655 -15.90462 -15.75090 -15.65925 -15.28803 -14.96038 -14.47040 -14.23417 -14.18867 -13.93083 -13.76360 -13.47645 -13.24617 -13.17353 -12.82005 -12.76891 -12.62077 -12.38202 -12.09474 -11.95179 -11.68956 -11.51550 -11.40954 -11.30486 -11.15814 -11.02459 -10.75695 -10.61451 -9.29592 -9.14696 -8.86255 -8.59222 -6.30294 0.97693 1.18608 1.37894 1.49815 1.52273 2.21878 2.71992 3.17292 3.40058 3.52722 3.77396 3.92003 3.95096 4.06368 4.30490 4.38887 4.40744 4.43805 4.52706 4.60993 4.67604 4.70668 4.74654 4.81322 4.85364 5.00932 5.03655 5.13098 5.16365 5.17986 5.22682 5.28921 5.41278 5.51580 5.52788 5.74814 5.99709 6.13481 6.21405 6.37324 6.42308 6.44611 6.74079 6.93191 6.95818 6.98488 7.07547 8.37539 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.004582 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.478257 B = 6109.104157 C = 6495.303170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.082 3.918 10 C -0.240 4.240 11 C -0.078 4.078 12 C -0.182 4.182 13 C 0.098 3.902 14 N -0.516 5.516 15 C 0.090 3.910 16 H 0.049 0.951 17 C 0.092 3.908 18 O -0.569 6.569 19 C -0.120 4.120 20 C -0.123 4.123 21 C 0.064 3.936 22 H 0.097 0.903 23 C 0.062 3.938 24 O -0.579 6.579 25 C -0.092 4.092 26 C -0.180 4.180 27 H 0.285 0.715 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.381 0.619 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.392 0.608 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 -11.754 -3.286 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.535 4.535 8 H 0.088 0.912 9 C 0.080 3.920 10 C -0.259 4.259 11 C -0.096 4.096 12 C -0.184 4.184 13 C -0.029 4.029 14 N -0.240 5.240 15 C -0.019 4.019 16 H 0.067 0.933 17 C 0.014 3.986 18 O -0.375 6.375 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.044 4.044 22 H 0.115 0.885 23 C -0.017 4.017 24 O -0.388 6.388 25 C -0.111 4.111 26 C -0.199 4.199 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.228 0.772 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.242 0.758 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.491 -11.859 -2.702 14.284 hybrid contribution 0.622 1.445 -0.614 1.688 sum -6.870 -10.414 -3.315 12.909 Atomic orbital electron populations 1.69870 1.08783 1.30128 1.36808 1.26648 0.95490 1.04145 0.91384 0.85224 0.79390 0.76603 0.78869 1.18398 1.18961 1.19140 1.19811 0.97289 0.92399 1.43971 0.91174 1.17880 0.92036 0.92813 0.89318 1.21152 1.04200 0.93562 1.07017 1.20600 0.95572 0.96364 0.97102 1.19347 0.99409 0.94270 1.05354 1.21361 0.93038 0.93626 0.94842 1.63694 1.11573 1.02326 1.46417 1.22327 0.92166 0.92252 0.95143 0.93319 1.22129 0.99567 0.92572 0.84318 1.86368 1.90631 1.44343 1.16168 1.22613 0.95161 0.97050 1.00937 1.22680 0.95744 0.97236 1.00463 1.22730 0.93151 0.93414 0.95081 0.88534 1.22647 0.99555 0.92119 0.87333 1.86511 1.84336 1.48097 1.19875 1.20648 0.98154 0.92625 0.99624 1.21157 1.00044 0.96634 1.02075 0.90424 0.89145 0.87680 0.90754 0.91390 0.94040 0.95444 0.77225 0.91045 0.90651 0.90685 0.89567 0.92653 0.91043 0.75800 0.88868 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.92 10.98 21.83 0.24 -43.68 16 2 C 0.04 1.91 5.17 85.26 0.44 2.35 16 3 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.50 -27.86 9.06 23.46 0.21 -27.65 16 8 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 9 C 0.08 4.48 5.55 -21.29 -0.12 4.36 16 10 C -0.24 -12.09 9.80 22.73 0.22 -11.87 16 11 C -0.08 -3.50 9.37 22.22 0.21 -3.29 16 12 C -0.18 -7.74 3.45 -19.67 -0.07 -7.81 16 13 C 0.10 3.35 3.85 85.56 0.33 3.68 16 14 N -0.52 -17.11 4.90 -840.31 -4.12 -21.23 16 15 C 0.09 3.13 2.19 45.39 0.10 3.23 16 16 H 0.05 1.86 6.17 -2.39 -0.01 1.84 16 17 C 0.09 3.62 6.41 71.98 0.46 4.08 16 18 O -0.57 -20.39 12.40 -148.98 -1.85 -22.24 16 19 C -0.12 -3.44 6.43 31.98 0.21 -3.24 16 20 C -0.12 -2.94 6.35 31.77 0.20 -2.73 16 21 C 0.06 1.64 3.85 45.26 0.17 1.81 16 22 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 23 C 0.06 1.23 6.00 71.98 0.43 1.67 16 24 O -0.58 -12.37 9.70 -148.98 -1.45 -13.81 16 25 C -0.09 -4.23 7.12 22.22 0.16 -4.08 16 26 C -0.18 -9.50 8.68 22.73 0.20 -9.30 16 27 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 28 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.07 2.48 5.01 -2.39 -0.01 2.47 16 31 H 0.07 2.18 6.74 -2.38 -0.02 2.16 16 32 H 0.04 1.94 5.02 -2.39 -0.01 1.93 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.38 11.13 9.12 -74.05 -0.68 10.45 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.29 7.05 -2.39 -0.02 2.27 16 37 H 0.07 1.83 6.88 -2.38 -0.02 1.81 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.13 6.25 -2.39 -0.01 1.11 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 41 H 0.39 4.91 9.12 -74.06 -0.68 4.23 16 42 H 0.09 4.04 7.09 -2.91 -0.02 4.02 16 43 H 0.10 5.32 6.25 -2.91 -0.02 5.30 16 Total: -1.00 -63.95 329.87 -2.29 -66.25 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -0.31 Total: 42.37 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.16 Total: -48.77 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -3.88 Total: -64.91 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -3.29 Total: -36.05 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -63.95 -2.29 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds