Wall clock time and date at job start Tue Mar 31 2020 08:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47383 * 240.00434 * 3 2 1 5 5 H 1.48509 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47302 * 120.00252 * 3 2 1 7 7 C 1.39948 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00181 * 196.81145 * 7 2 1 9 9 C 1.41394 * 119.99758 * 16.81211 * 7 2 1 10 10 C 1.40719 * 120.24414 * 205.15214 * 9 7 2 11 11 C 1.37617 * 119.74495 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24913 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74742 * 180.02562 * 12 11 10 14 14 N 1.46895 * 109.47075 * 89.99963 * 13 12 11 15 15 C 1.47451 * 111.00113 * 182.80525 * 14 13 12 16 16 H 1.09003 * 109.88638 * 242.82771 * 15 14 13 17 17 C 1.52999 * 109.88631 * 3.85014 * 15 14 13 18 18 O 1.42897 * 109.47018 * 66.45776 * 17 15 14 19 19 C 1.54317 * 107.37070 * 123.33949 * 15 14 13 20 20 C 1.55390 * 102.90136 * 22.10503 * 19 15 14 21 21 C 1.47840 * 111.00216 * 303.64528 * 14 13 12 22 22 H 1.08998 * 110.37687 * 332.57720 * 21 14 13 23 23 C 1.53004 * 110.37609 * 94.80764 * 21 14 13 24 24 O 1.42901 * 109.46990 * 64.99965 * 23 21 14 25 25 C 1.38636 * 120.50324 * 0.27037 * 12 11 10 26 26 C 1.37618 * 120.24533 * 359.45108 * 25 12 11 27 27 H 0.97003 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.12513 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87077 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47372 * 329.99799 * 13 12 11 31 31 H 1.09002 * 109.46914 * 209.99531 * 13 12 11 32 32 H 1.08999 * 109.47179 * 186.46100 * 17 15 14 33 33 H 1.09002 * 109.46966 * 306.45769 * 17 15 14 34 34 H 0.96700 * 113.99704 * 180.02562 * 18 17 15 35 35 H 1.09000 * 110.70697 * 140.58661 * 19 15 14 36 36 H 1.09004 * 110.70310 * 263.82136 * 19 15 14 37 37 H 1.09008 * 111.02668 * 206.36720 * 20 19 15 38 38 H 1.09004 * 110.90599 * 82.62288 * 20 19 15 39 39 H 1.09002 * 109.47487 * 185.00342 * 23 21 14 40 40 H 1.09004 * 109.46895 * 305.00473 * 23 21 14 41 41 H 0.96696 * 114.00030 * 179.97438 * 24 23 21 42 42 H 1.07997 * 119.87286 * 179.70234 * 25 12 11 43 43 H 1.07997 * 120.12853 * 180.26910 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0533 -1.2320 0.2699 9 6 1.3463 -2.4101 -0.3553 10 6 1.8178 -3.6477 0.1204 11 6 1.1657 -4.8075 -0.2309 12 6 0.0479 -4.7597 -1.0495 13 6 -0.6579 -6.0367 -1.4266 14 7 -1.6992 -6.3323 -0.4336 15 6 -2.3677 -7.6118 -0.7336 16 1 -3.4228 -7.4382 -0.9453 17 6 -1.6986 -8.2789 -1.9370 18 8 -0.3658 -8.6601 -1.5901 19 6 -2.2232 -8.5105 0.5125 20 6 -1.9722 -7.4849 1.6526 21 6 -1.1271 -6.4080 0.9276 22 1 -0.0809 -6.7107 0.8832 23 6 -1.2606 -5.0592 1.6374 24 8 -2.6439 -4.7602 1.8358 25 6 -0.4225 -3.5466 -1.5281 26 6 0.2105 -2.3737 -1.1851 27 1 -0.4850 0.8401 0.0004 28 1 2.6882 -3.6872 0.7586 29 1 1.5260 -5.7585 0.1327 30 1 0.0614 -6.8552 -1.4534 31 1 -1.1152 -5.9225 -2.4095 32 1 -2.2665 -9.1638 -2.2242 33 1 -1.6706 -7.5784 -2.7717 34 1 0.1196 -9.0899 -2.3076 35 1 -3.1401 -9.0723 0.6910 36 1 -1.3723 -9.1833 0.4058 37 1 -1.4100 -7.9379 2.4694 38 1 -2.9119 -7.0664 2.0131 39 1 -0.7567 -5.1051 2.6028 40 1 -0.8046 -4.2803 1.0262 41 1 -2.8040 -3.9175 2.2821 42 1 -1.2913 -3.5216 -2.1691 43 1 -0.1602 -1.4294 -1.5554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347268727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:57 Heat of formation + Delta-G solvation = -66.590587 kcal Electronic energy + Delta-G solvation = -24466.258666 eV Core-core repulsion = 21090.215120 eV Total energy + Delta-G solvation = -3376.043545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.82555 -37.42818 -36.51389 -35.24634 -33.91259 -31.98408 -30.63396 -29.49650 -29.00758 -26.64631 -25.87095 -23.68049 -22.82869 -21.06509 -20.30295 -20.03312 -18.78633 -17.62372 -17.25168 -16.84753 -15.65756 -15.31404 -15.13574 -14.65228 -14.22920 -13.99795 -13.69282 -13.32339 -13.21388 -12.84922 -12.76449 -12.38531 -12.08278 -11.93712 -11.86667 -11.68044 -11.37689 -11.12070 -11.00478 -10.78451 -10.65627 -10.47587 -10.37435 -10.25692 -10.05639 -9.85240 -9.44150 -9.31398 -9.21952 -8.96407 -7.62069 -7.39283 -7.19213 -6.71969 -4.31739 2.79237 3.07313 3.10018 3.10714 3.21550 3.94860 4.23110 4.38676 4.69006 4.88745 4.99539 5.10483 5.19939 5.34909 5.41678 5.60731 5.74644 5.77835 5.90462 5.97060 6.04058 6.09776 6.10845 6.19287 6.30804 6.37220 6.46387 6.53818 6.57934 6.71323 6.76363 7.00233 7.10477 7.34667 7.39532 7.55233 7.60763 7.65544 7.73123 7.94890 8.08884 8.21494 8.32192 8.34220 8.68332 8.93148 9.01514 10.22035 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.004433 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.141039 B = 6314.544814 C = 6750.200821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.111 3.889 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.201 4.201 13 C 0.091 3.909 14 N -0.501 5.501 15 C 0.072 3.928 16 H 0.089 0.911 17 C 0.057 3.943 18 O -0.561 6.561 19 C -0.133 4.133 20 C -0.124 4.124 21 C 0.090 3.910 22 H 0.064 0.936 23 C 0.084 3.916 24 O -0.566 6.566 25 C -0.083 4.083 26 C -0.166 4.166 27 H 0.280 0.720 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.372 0.628 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.080 0.920 41 H 0.369 0.631 42 H 0.085 0.915 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -11.951 -0.946 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.248 4.248 11 C -0.105 4.105 12 C -0.203 4.203 13 C -0.035 4.035 14 N -0.225 5.225 15 C -0.036 4.036 16 H 0.107 0.893 17 C -0.022 4.022 18 O -0.366 6.366 19 C -0.172 4.172 20 C -0.162 4.162 21 C -0.018 4.018 22 H 0.082 0.918 23 C 0.006 3.994 24 O -0.370 6.370 25 C -0.102 4.102 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.214 0.786 42 H 0.103 0.897 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.524 -11.702 -0.704 12.566 hybrid contribution 1.137 0.515 -0.216 1.266 sum -3.387 -11.187 -0.920 11.725 Atomic orbital electron populations 1.69812 1.07477 1.29160 1.35520 1.25870 0.94705 1.01128 0.92357 0.86414 0.80166 0.80482 0.79901 1.18910 1.20381 1.19106 1.19542 0.97661 0.91262 1.41084 0.90702 1.17588 0.91223 0.91890 0.88446 1.20941 1.03682 0.93004 1.07137 1.20380 0.95818 0.96114 0.98199 1.18963 0.99854 0.93371 1.08080 1.21403 0.92251 0.96131 0.93726 1.63795 1.28811 1.28121 1.01800 1.22575 0.98603 0.89043 0.93407 0.89277 1.22746 0.83241 0.97863 0.98329 1.86587 1.26347 1.80901 1.42790 1.22775 1.01596 0.97934 0.94855 1.22705 1.01215 0.95389 0.96869 1.22410 0.96894 0.93812 0.88698 0.91777 1.22344 0.82082 0.97680 0.97290 1.86403 1.25480 1.42514 1.82588 1.20524 0.97724 0.92576 0.99336 1.21306 0.99326 0.96676 1.01209 0.90919 0.89328 0.89952 0.91657 0.92621 0.93938 0.92539 0.78084 0.91861 0.90667 0.91988 0.89911 0.95317 0.90218 0.78617 0.89682 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.48 10.94 55.55 0.61 -19.87 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.32 9.06 -37.74 -0.34 -12.66 16 8 H 0.07 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.11 2.92 5.57 -106.82 -0.60 2.33 16 10 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 11 C -0.09 -1.90 7.09 -39.66 -0.28 -2.18 16 12 C -0.20 -4.33 3.46 -104.33 -0.36 -4.69 16 13 C 0.09 1.66 3.84 -4.98 -0.02 1.64 16 14 N -0.50 -8.83 4.90 -216.95 -1.06 -9.89 16 15 C 0.07 1.04 3.84 -66.72 -0.26 0.78 16 16 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.06 0.67 6.00 37.16 0.22 0.90 16 18 O -0.56 -6.80 9.71 -35.23 -0.34 -7.14 16 19 C -0.13 -1.78 6.38 -24.77 -0.16 -1.94 16 20 C -0.12 -1.86 6.43 -24.46 -0.16 -2.02 16 21 C 0.09 1.59 2.20 -66.19 -0.15 1.44 16 22 H 0.06 1.19 6.17 -51.93 -0.32 0.87 16 23 C 0.08 1.60 6.40 37.16 0.24 1.84 16 24 O -0.57 -10.34 12.40 -35.23 -0.44 -10.78 16 25 C -0.08 -1.94 9.41 -39.66 -0.37 -2.31 16 26 C -0.17 -4.29 8.69 -38.87 -0.34 -4.62 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.08 1.67 7.07 -52.49 -0.37 1.30 16 30 H 0.07 1.16 5.03 -51.93 -0.26 0.90 16 31 H 0.06 0.99 6.71 -51.93 -0.35 0.64 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.69 6.25 -51.93 -0.32 0.36 16 34 H 0.37 2.89 9.12 45.56 0.42 3.31 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.08 1.32 7.05 -51.93 -0.37 0.96 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.80 5.02 -51.93 -0.26 1.54 16 41 H 0.37 5.55 9.12 45.56 0.42 5.96 16 42 H 0.08 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.12 3.12 6.17 -52.49 -0.32 2.80 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -29.11 329.80 -8.94 -38.05 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -4.61 Total: 16.55 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.04 Total: -25.56 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: -0.46 Total: -29.77 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.78 Total: -17.93 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.11 -8.94 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.538 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds