Wall clock time and date at job start Tue Mar 31 2020 08:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47383 * 240.00434 * 3 2 1 5 5 H 1.48509 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47302 * 120.00252 * 3 2 1 7 7 C 1.39948 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00181 * 196.81145 * 7 2 1 9 9 C 1.41394 * 119.99758 * 16.81211 * 7 2 1 10 10 C 1.40719 * 120.24414 * 205.15214 * 9 7 2 11 11 C 1.37617 * 119.74495 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24913 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74742 * 180.02562 * 12 11 10 14 14 N 1.46895 * 109.47075 * 89.99963 * 13 12 11 15 15 C 1.47451 * 111.00113 * 182.80525 * 14 13 12 16 16 H 1.09003 * 109.88638 * 242.82771 * 15 14 13 17 17 C 1.52999 * 109.88631 * 3.85014 * 15 14 13 18 18 O 1.42897 * 109.47018 * 66.45776 * 17 15 14 19 19 C 1.54317 * 107.37070 * 123.33949 * 15 14 13 20 20 C 1.55390 * 102.90136 * 22.10503 * 19 15 14 21 21 C 1.47840 * 111.00216 * 303.64528 * 14 13 12 22 22 H 1.08998 * 110.37687 * 332.57720 * 21 14 13 23 23 C 1.53004 * 110.37609 * 94.80764 * 21 14 13 24 24 O 1.42901 * 109.46990 * 64.99965 * 23 21 14 25 25 C 1.38636 * 120.50324 * 0.27037 * 12 11 10 26 26 C 1.37618 * 120.24533 * 359.45108 * 25 12 11 27 27 H 0.97003 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.12513 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87077 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47372 * 329.99799 * 13 12 11 31 31 H 1.09002 * 109.46914 * 209.99531 * 13 12 11 32 32 H 1.08999 * 109.47179 * 186.46100 * 17 15 14 33 33 H 1.09002 * 109.46966 * 306.45769 * 17 15 14 34 34 H 0.96700 * 113.99704 * 180.02562 * 18 17 15 35 35 H 1.09000 * 110.70697 * 140.58661 * 19 15 14 36 36 H 1.09004 * 110.70310 * 263.82136 * 19 15 14 37 37 H 1.09008 * 111.02668 * 206.36720 * 20 19 15 38 38 H 1.09004 * 110.90599 * 82.62288 * 20 19 15 39 39 H 1.09002 * 109.47487 * 185.00342 * 23 21 14 40 40 H 1.09004 * 109.46895 * 305.00473 * 23 21 14 41 41 H 0.96696 * 114.00030 * 179.97438 * 24 23 21 42 42 H 1.07997 * 119.87286 * 179.70234 * 25 12 11 43 43 H 1.07997 * 120.12853 * 180.26910 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0533 -1.2320 0.2699 9 6 1.3463 -2.4101 -0.3553 10 6 1.8178 -3.6477 0.1204 11 6 1.1657 -4.8075 -0.2309 12 6 0.0479 -4.7597 -1.0495 13 6 -0.6579 -6.0367 -1.4266 14 7 -1.6992 -6.3323 -0.4336 15 6 -2.3677 -7.6118 -0.7336 16 1 -3.4228 -7.4382 -0.9453 17 6 -1.6986 -8.2789 -1.9370 18 8 -0.3658 -8.6601 -1.5901 19 6 -2.2232 -8.5105 0.5125 20 6 -1.9722 -7.4849 1.6526 21 6 -1.1271 -6.4080 0.9276 22 1 -0.0809 -6.7107 0.8832 23 6 -1.2606 -5.0592 1.6374 24 8 -2.6439 -4.7602 1.8358 25 6 -0.4225 -3.5466 -1.5281 26 6 0.2105 -2.3737 -1.1851 27 1 -0.4850 0.8401 0.0004 28 1 2.6882 -3.6872 0.7586 29 1 1.5260 -5.7585 0.1327 30 1 0.0614 -6.8552 -1.4534 31 1 -1.1152 -5.9225 -2.4095 32 1 -2.2665 -9.1638 -2.2242 33 1 -1.6706 -7.5784 -2.7717 34 1 0.1196 -9.0899 -2.3076 35 1 -3.1401 -9.0723 0.6910 36 1 -1.3723 -9.1833 0.4058 37 1 -1.4100 -7.9379 2.4694 38 1 -2.9119 -7.0664 2.0131 39 1 -0.7567 -5.1051 2.6028 40 1 -0.8046 -4.2803 1.0262 41 1 -2.8040 -3.9175 2.2821 42 1 -1.2913 -3.5216 -2.1691 43 1 -0.1602 -1.4294 -1.5554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347268727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:52 Heat of formation + Delta-G solvation = -88.448668 kcal Electronic energy + Delta-G solvation = -24467.206503 eV Core-core repulsion = 21090.215120 eV Total energy + Delta-G solvation = -3376.991383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.12160 -39.15684 -37.73945 -36.49196 -35.71640 -33.52071 -31.89925 -31.28854 -30.73108 -28.10043 -27.36106 -25.14361 -24.20552 -22.89638 -21.88572 -21.45027 -20.12781 -19.16982 -18.56004 -18.30165 -17.19131 -16.76934 -16.51349 -15.90680 -15.72154 -15.69614 -15.27621 -14.95380 -14.47733 -14.25466 -14.17061 -13.91708 -13.76218 -13.36428 -13.31032 -13.16778 -12.86168 -12.76529 -12.64400 -12.28468 -12.10439 -11.98806 -11.68921 -11.50572 -11.41065 -11.27438 -11.18416 -11.01577 -10.76054 -10.58721 -9.30798 -9.13744 -8.85524 -8.59146 -6.29520 0.99998 1.18433 1.37760 1.48543 1.53617 2.21558 2.71874 3.18137 3.39904 3.53870 3.78162 3.92208 3.95843 4.06398 4.31082 4.38740 4.41289 4.43934 4.53805 4.58707 4.66407 4.70691 4.73887 4.81843 4.86558 5.01892 5.05780 5.13249 5.16057 5.18147 5.20509 5.29689 5.44865 5.50250 5.53494 5.74804 5.99090 6.13563 6.25428 6.36639 6.42780 6.45284 6.74920 6.93016 6.96078 6.98316 7.08368 8.36631 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.004433 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.141039 B = 6314.544814 C = 6750.200821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.082 3.918 10 C -0.239 4.239 11 C -0.080 4.080 12 C -0.184 4.184 13 C 0.099 3.901 14 N -0.519 5.519 15 C 0.064 3.936 16 H 0.092 0.908 17 C 0.062 3.938 18 O -0.578 6.578 19 C -0.122 4.122 20 C -0.119 4.119 21 C 0.089 3.911 22 H 0.055 0.945 23 C 0.088 3.912 24 O -0.572 6.572 25 C -0.090 4.090 26 C -0.186 4.186 27 H 0.286 0.714 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.392 0.608 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.380 0.620 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -13.889 -1.129 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.258 4.258 11 C -0.098 4.098 12 C -0.185 4.185 13 C -0.027 4.027 14 N -0.244 5.244 15 C -0.044 4.044 16 H 0.110 0.890 17 C -0.016 4.016 18 O -0.386 6.386 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.019 4.019 22 H 0.073 0.927 23 C 0.010 3.990 24 O -0.377 6.377 25 C -0.108 4.108 26 C -0.205 4.205 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.227 0.773 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.877 -13.663 -0.896 14.535 hybrid contribution 1.163 0.974 -0.154 1.525 sum -3.714 -12.690 -1.050 13.264 Atomic orbital electron populations 1.69878 1.08888 1.30327 1.36197 1.26684 0.95450 1.04276 0.91356 0.85316 0.78819 0.75980 0.79960 1.18636 1.19264 1.18441 1.19782 0.97849 0.92574 1.43254 0.90984 1.17871 0.91948 0.92917 0.89311 1.21106 1.04119 0.93254 1.07367 1.20557 0.95486 0.96209 0.97580 1.19333 0.99075 0.94246 1.05849 1.21344 0.92741 0.94422 0.94210 1.63665 1.28367 1.30879 1.01478 1.22709 0.98654 0.87926 0.95130 0.88983 1.22624 0.83511 0.98795 0.96653 1.86497 1.26617 1.81234 1.44290 1.22726 1.02753 0.97309 0.93274 1.22658 1.00309 0.95052 0.97709 1.22366 0.96908 0.93550 0.89125 0.92686 1.22218 0.82139 0.97522 0.97146 1.86371 1.25050 1.43480 1.82820 1.20681 0.97842 0.92736 0.99591 1.21214 1.00202 0.96742 1.02370 0.90357 0.88974 0.87767 0.90383 0.91980 0.91078 0.92921 0.75764 0.89694 0.90431 0.90630 0.90911 0.94634 0.94203 0.77283 0.88893 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.21 10.94 21.83 0.24 -43.97 16 2 C 0.04 1.89 5.16 85.26 0.44 2.33 16 3 Si 0.98 39.06 29.59 68.60 2.03 41.09 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.81 9.06 23.46 0.21 -27.60 16 8 H 0.07 3.84 7.90 -2.91 -0.02 3.82 16 9 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 10 C -0.24 -11.83 9.80 22.73 0.22 -11.61 16 11 C -0.08 -3.48 7.09 22.22 0.16 -3.32 16 12 C -0.18 -7.82 3.46 -19.67 -0.07 -7.89 16 13 C 0.10 3.43 3.84 85.56 0.33 3.76 16 14 N -0.52 -17.34 4.90 -840.30 -4.12 -21.46 16 15 C 0.06 1.64 3.84 45.26 0.17 1.82 16 16 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 17 C 0.06 1.26 6.00 71.98 0.43 1.69 16 18 O -0.58 -11.92 9.71 -148.98 -1.45 -13.36 16 19 C -0.12 -2.85 6.38 31.86 0.20 -2.64 16 20 C -0.12 -3.30 6.43 32.07 0.21 -3.09 16 21 C 0.09 2.99 2.20 45.39 0.10 3.09 16 22 H 0.06 1.94 6.17 -2.39 -0.01 1.93 16 23 C 0.09 3.33 6.40 71.98 0.46 3.79 16 24 O -0.57 -20.68 12.40 -148.98 -1.85 -22.53 16 25 C -0.09 -4.29 9.41 22.22 0.21 -4.08 16 26 C -0.19 -10.02 8.69 22.73 0.20 -9.83 16 27 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 28 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.10 4.07 7.07 -2.91 -0.02 4.05 16 30 H 0.08 2.55 5.03 -2.39 -0.01 2.54 16 31 H 0.06 2.07 6.71 -2.39 -0.02 2.06 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.11 6.25 -2.39 -0.01 1.09 16 34 H 0.39 4.64 9.12 -74.06 -0.68 3.97 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.80 6.90 -2.38 -0.02 1.79 16 37 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.07 2.17 7.05 -2.38 -0.02 2.16 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.83 5.02 -2.38 -0.01 1.82 16 41 H 0.38 11.48 9.12 -74.06 -0.68 10.81 16 42 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.10 5.44 6.17 -2.91 -0.02 5.42 16 Total: -1.00 -64.29 329.80 -2.29 -66.58 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -0.31 Total: 42.87 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.16 Total: -49.22 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -3.88 Total: -65.42 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -3.29 Total: -35.89 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -64.29 -2.29 -66.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347268727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.867 kcal (2) G-P(sol) polarization free energy of solvation -64.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds