Wall clock time and date at job start Tue Mar 31 2020 07:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48501 * 109.46705 * 239.99467 * 3 2 1 5 5 H 1.48494 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47144 * 120.00068 * 3 2 1 7 7 C 1.37886 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47070 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.46778 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99758 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47336 * 179.97438 * 13 12 11 15 15 C 1.38388 * 120.14135 * 260.00100 * 14 13 12 16 16 C 1.38209 * 120.21895 * 180.02562 * 15 14 13 17 17 C 1.38388 * 120.21765 * 359.95470 * 16 15 14 18 18 C 1.38419 * 119.70521 * 359.97438 * 17 16 15 19 19 C 1.38420 * 120.14255 * 79.97530 * 14 13 12 20 20 O 1.36460 * 120.31371 * 0.09815 * 19 14 13 21 21 C 1.42912 * 115.92194 * 248.26880 * 20 19 14 22 22 C 1.52068 * 110.73158 * 275.59406 * 21 20 19 23 23 C 1.52059 * 112.37599 * 64.86222 * 22 21 20 24 24 O 1.36471 * 120.32082 * 180.02562 * 18 17 16 25 25 H 0.96998 * 119.99874 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46768 * 59.99866 * 9 7 2 27 27 H 1.08995 * 109.47373 * 299.99790 * 9 7 2 28 28 H 1.09008 * 109.46710 * 59.99910 * 10 9 7 29 29 H 1.08995 * 109.47337 * 300.00376 * 10 9 7 30 30 H 1.08995 * 109.46973 * 60.00622 * 11 10 9 31 31 H 1.08998 * 109.46833 * 300.00357 * 11 10 9 32 32 H 1.00901 * 111.00107 * 303.95254 * 12 11 10 33 33 H 1.09001 * 109.47048 * 59.99829 * 13 12 11 34 34 H 1.08998 * 109.47461 * 299.99730 * 13 12 11 35 35 H 1.08001 * 119.88929 * 0.02562 * 15 14 13 36 36 H 1.08003 * 119.88902 * 179.97438 * 16 15 14 37 37 H 1.07990 * 120.14822 * 180.02562 * 17 16 15 38 38 H 1.09000 * 109.21354 * 35.94467 * 21 20 19 39 39 H 1.09003 * 109.21861 * 155.32552 * 21 20 19 40 40 H 1.08998 * 108.94075 * 304.09113 * 22 21 20 41 41 H 1.08996 * 108.86450 * 185.58295 * 22 21 20 42 42 H 1.09002 * 109.21622 * 174.77469 * 23 22 21 43 43 H 1.09003 * 109.21481 * 55.39855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4802 -4.9872 -0.0001 12 7 2.4349 -6.1037 0.0005 13 6 1.7346 -7.3950 -0.0007 14 6 2.7441 -8.5140 -0.0007 15 6 3.0560 -9.1684 -1.1794 16 6 3.9812 -10.1952 -1.1811 17 6 4.6024 -10.5750 -0.0042 18 6 4.2936 -9.9214 1.1762 19 6 3.3636 -8.8912 1.1783 20 8 3.0640 -8.2551 2.3479 21 6 4.1068 -7.4547 2.9086 22 6 5.0502 -8.3071 3.7428 23 6 5.8011 -9.3294 2.9042 24 8 4.8990 -10.2853 2.3439 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6044 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8540 -5.0447 -0.8903 31 1 0.8533 -5.0451 0.8896 32 1 3.0703 -6.0366 -0.7804 33 1 1.1106 -7.4691 -0.8914 34 1 1.1088 -7.4699 0.8886 35 1 2.5750 -8.8759 -2.1010 36 1 4.2204 -10.7026 -2.1041 37 1 5.3254 -11.3771 -0.0069 38 1 4.6678 -6.9809 2.1031 39 1 3.6667 -6.6838 3.5411 40 1 4.4733 -8.8308 4.5050 41 1 5.7721 -7.6553 4.2348 42 1 6.5263 -9.8461 3.5330 43 1 6.3261 -8.8165 2.0984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348848455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:41 Heat of formation + Delta-G solvation = -64.067767 kcal Electronic energy + Delta-G solvation = -23006.307684 eV Core-core repulsion = 19630.373537 eV Total energy + Delta-G solvation = -3375.934147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.00104 -38.12581 -37.49767 -36.18113 -33.63875 -33.01969 -31.95658 -30.22245 -29.19822 -26.96311 -26.45286 -24.65067 -22.39187 -22.17642 -22.12461 -21.09608 -20.07597 -18.38280 -17.27193 -16.98611 -16.27343 -15.71081 -15.48211 -15.38119 -15.11594 -14.59902 -14.29901 -14.17115 -14.10557 -13.92888 -13.38543 -13.09975 -12.84932 -12.40672 -12.22399 -12.06653 -11.65183 -11.55419 -11.38760 -11.21776 -10.91429 -10.81360 -10.56698 -10.53204 -10.50551 -9.97429 -9.68595 -9.36641 -9.08244 -8.83478 -8.58702 -8.33257 -8.16112 -5.98508 -4.00728 0.96750 1.02341 3.13646 3.33919 3.38191 3.39206 3.40717 3.81572 4.40063 4.48280 4.50045 4.59379 4.69697 4.82963 4.93576 5.04389 5.09593 5.15582 5.20807 5.29396 5.37101 5.41829 5.49658 5.57283 5.70168 5.78389 5.84942 5.89414 5.95477 6.05580 6.17516 6.32496 6.34059 6.42212 6.71872 6.76590 7.03536 7.14185 7.32274 7.51316 7.62424 7.69624 7.85085 8.01961 8.44997 9.06325 9.63057 11.12917 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002994 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.412028 B = 9350.051743 C =10063.714763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.683 5.683 13 C 0.102 3.898 14 C -0.078 4.078 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.121 4.121 18 C 0.059 3.941 19 C 0.092 3.908 20 O -0.312 6.312 21 C 0.069 3.931 22 C -0.189 4.189 23 C 0.061 3.939 24 O -0.322 6.322 25 H 0.261 0.739 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.335 0.665 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -22.306 1.600 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.314 5.314 13 C -0.027 4.027 14 C -0.079 4.079 15 C -0.127 4.127 16 C -0.133 4.133 17 C -0.139 4.139 18 C 0.015 3.985 19 C 0.047 3.953 20 O -0.228 6.228 21 C -0.006 4.006 22 C -0.226 4.226 23 C -0.014 4.014 24 O -0.239 6.239 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.159 -22.324 2.514 24.656 hybrid contribution 0.363 1.102 -0.945 1.497 sum 10.522 -21.222 1.569 23.739 Atomic orbital electron populations 1.69958 1.06058 1.26672 1.50903 1.25034 0.94849 0.99243 0.95388 0.86656 0.79575 0.83154 0.78602 1.20281 1.21309 1.20230 1.21220 0.92987 0.91089 1.50504 0.92766 1.19058 0.94008 0.91323 0.97128 1.21612 0.99158 0.92985 1.00589 1.22138 0.94085 0.90561 1.00044 1.60587 1.20340 1.00765 1.49662 1.20759 0.93352 0.87061 1.01528 1.19923 0.99412 0.97455 0.91145 1.21075 0.98131 0.96204 0.97310 1.21009 0.97017 0.97618 0.97674 1.21056 1.01018 1.01285 0.90579 1.19192 0.95852 0.96835 0.86600 1.18938 0.96434 0.93218 0.86672 1.86320 1.38745 1.63059 1.34666 1.22542 0.89081 0.91836 0.97123 1.22516 1.00293 0.99230 1.00602 1.22623 0.90762 0.90925 0.97061 1.86339 1.59295 1.42472 1.35784 0.92972 0.96824 0.96560 0.92669 0.93742 0.95703 0.91342 0.84741 0.94474 0.89606 0.85311 0.85236 0.85105 0.91832 0.87777 0.90085 0.89265 0.88139 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 N -0.68 -10.02 6.49 -115.06 -0.75 -10.77 16 13 C 0.10 1.34 5.49 -4.98 -0.03 1.32 16 14 C -0.08 -0.98 5.40 -104.50 -0.56 -1.54 16 15 C -0.11 -1.11 9.67 -39.54 -0.38 -1.50 16 16 C -0.12 -1.05 10.04 -39.54 -0.40 -1.45 16 17 C -0.12 -1.23 10.01 -39.46 -0.39 -1.63 16 18 C 0.06 0.73 5.73 -39.31 -0.23 0.51 16 19 C 0.09 1.24 5.70 -39.31 -0.22 1.02 16 20 O -0.31 -4.43 9.42 -36.66 -0.35 -4.78 16 21 C 0.07 0.80 6.51 36.68 0.24 1.04 16 22 C -0.19 -1.72 5.92 -27.68 -0.16 -1.89 16 23 C 0.06 0.56 6.51 36.68 0.24 0.80 16 24 O -0.32 -3.95 10.16 -36.69 -0.37 -4.32 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.16 8.14 -51.92 -0.42 0.73 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.34 4.65 8.72 -39.29 -0.34 4.31 16 33 H 0.04 0.45 8.01 -51.93 -0.42 0.04 16 34 H 0.09 1.23 7.87 -51.93 -0.41 0.82 16 35 H 0.13 1.09 8.04 -52.49 -0.42 0.66 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -31.92 353.94 -10.06 -41.98 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.03 Total: 0.09 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.62 Total: -17.84 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.01 Total: -37.22 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.72 Total: -9.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.92 -10.06 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348848455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.087 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds