Wall clock time and date at job start Tue Mar 31 2020 07:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48501 * 109.46705 * 239.99467 * 3 2 1 5 5 H 1.48494 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47144 * 120.00068 * 3 2 1 7 7 C 1.37886 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47070 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.46778 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99758 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47336 * 179.97438 * 13 12 11 15 15 C 1.38388 * 120.14135 * 260.00100 * 14 13 12 16 16 C 1.38209 * 120.21895 * 180.02562 * 15 14 13 17 17 C 1.38388 * 120.21765 * 359.95470 * 16 15 14 18 18 C 1.38419 * 119.70521 * 359.97438 * 17 16 15 19 19 C 1.38420 * 120.14255 * 79.97530 * 14 13 12 20 20 O 1.36460 * 120.31371 * 0.09815 * 19 14 13 21 21 C 1.42912 * 115.92194 * 248.26880 * 20 19 14 22 22 C 1.52068 * 110.73158 * 275.59406 * 21 20 19 23 23 C 1.52059 * 112.37599 * 64.86222 * 22 21 20 24 24 O 1.36471 * 120.32082 * 180.02562 * 18 17 16 25 25 H 0.96998 * 119.99874 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46768 * 59.99866 * 9 7 2 27 27 H 1.08995 * 109.47373 * 299.99790 * 9 7 2 28 28 H 1.09008 * 109.46710 * 59.99910 * 10 9 7 29 29 H 1.08995 * 109.47337 * 300.00376 * 10 9 7 30 30 H 1.08995 * 109.46973 * 60.00622 * 11 10 9 31 31 H 1.08998 * 109.46833 * 300.00357 * 11 10 9 32 32 H 1.00901 * 111.00107 * 303.95254 * 12 11 10 33 33 H 1.09001 * 109.47048 * 59.99829 * 13 12 11 34 34 H 1.08998 * 109.47461 * 299.99730 * 13 12 11 35 35 H 1.08001 * 119.88929 * 0.02562 * 15 14 13 36 36 H 1.08003 * 119.88902 * 179.97438 * 16 15 14 37 37 H 1.07990 * 120.14822 * 180.02562 * 17 16 15 38 38 H 1.09000 * 109.21354 * 35.94467 * 21 20 19 39 39 H 1.09003 * 109.21861 * 155.32552 * 21 20 19 40 40 H 1.08998 * 108.94075 * 304.09113 * 22 21 20 41 41 H 1.08996 * 108.86450 * 185.58295 * 22 21 20 42 42 H 1.09002 * 109.21622 * 174.77469 * 23 22 21 43 43 H 1.09003 * 109.21481 * 55.39855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4802 -4.9872 -0.0001 12 7 2.4349 -6.1037 0.0005 13 6 1.7346 -7.3950 -0.0007 14 6 2.7441 -8.5140 -0.0007 15 6 3.0560 -9.1684 -1.1794 16 6 3.9812 -10.1952 -1.1811 17 6 4.6024 -10.5750 -0.0042 18 6 4.2936 -9.9214 1.1762 19 6 3.3636 -8.8912 1.1783 20 8 3.0640 -8.2551 2.3479 21 6 4.1068 -7.4547 2.9086 22 6 5.0502 -8.3071 3.7428 23 6 5.8011 -9.3294 2.9042 24 8 4.8990 -10.2853 2.3439 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6044 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8540 -5.0447 -0.8903 31 1 0.8533 -5.0451 0.8896 32 1 3.0703 -6.0366 -0.7804 33 1 1.1106 -7.4691 -0.8914 34 1 1.1088 -7.4699 0.8886 35 1 2.5750 -8.8759 -2.1010 36 1 4.2204 -10.7026 -2.1041 37 1 5.3254 -11.3771 -0.0069 38 1 4.6678 -6.9809 2.1031 39 1 3.6667 -6.6838 3.5411 40 1 4.4733 -8.8308 4.5050 41 1 5.7721 -7.6553 4.2348 42 1 6.5263 -9.8461 3.5330 43 1 6.3261 -8.8165 2.0984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348848455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:41 Heat of formation + Delta-G solvation = -83.754539 kcal Electronic energy + Delta-G solvation = -23007.161367 eV Core-core repulsion = 19630.373537 eV Total energy + Delta-G solvation = -3376.787830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85265 -39.00726 -38.39503 -37.50324 -35.50323 -33.80975 -33.56192 -31.58344 -30.02942 -28.45758 -27.43617 -26.06622 -23.96537 -23.08924 -22.99875 -22.14732 -21.67336 -19.25679 -18.49793 -18.12366 -17.83042 -16.80262 -16.57867 -16.33228 -16.30799 -16.01446 -15.59044 -15.38811 -15.04487 -14.91254 -14.42639 -14.35425 -14.10174 -13.75302 -13.50568 -13.21921 -13.05355 -12.86725 -12.64129 -12.56151 -12.42339 -12.27079 -12.03217 -11.75898 -11.53268 -11.39275 -11.31848 -11.13994 -10.81736 -10.54858 -9.72903 -9.43058 -9.36114 -8.19940 -6.31229 0.15460 0.18377 1.40037 1.43352 1.51329 2.35043 2.41376 2.56929 2.95114 3.13069 3.33214 3.70248 3.75387 3.87290 3.99147 4.20046 4.23742 4.26093 4.31215 4.38622 4.41342 4.44220 4.47500 4.58396 4.64704 4.71804 4.76935 4.84958 4.97627 4.98909 5.10053 5.10200 5.24156 5.27821 5.37846 5.47698 5.51575 5.67707 5.75071 5.85784 6.00503 6.21019 6.26617 6.46236 6.63362 6.85725 7.37997 8.91869 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002994 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.412028 B = 9350.051743 C =10063.714763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.075 3.925 12 N -0.681 5.681 13 C 0.108 3.892 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.120 4.120 18 C 0.043 3.957 19 C 0.068 3.932 20 O -0.337 6.337 21 C 0.064 3.936 22 C -0.182 4.182 23 C 0.056 3.944 24 O -0.340 6.340 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.011 1.011 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.343 0.657 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.504 -23.089 0.641 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.054 4.054 12 N -0.312 5.312 13 C -0.020 4.020 14 C -0.096 4.096 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.139 4.139 18 C -0.001 4.001 19 C 0.024 3.976 20 O -0.254 6.254 21 C -0.010 4.010 22 C -0.220 4.220 23 C -0.018 4.018 24 O -0.257 6.257 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.243 -23.127 1.554 26.214 hybrid contribution -0.286 1.286 -0.651 1.469 sum 11.957 -21.841 0.903 24.916 Atomic orbital electron populations 1.70096 1.07850 1.27853 1.51679 1.26011 0.95784 1.03446 0.94712 0.85488 0.78266 0.77986 0.79244 1.19043 1.20844 1.19158 1.21676 0.93553 0.92387 1.50571 0.92172 1.18962 0.94419 0.93118 0.94703 1.21347 0.97951 0.92739 1.00691 1.21815 0.93915 0.90040 0.99657 1.60457 1.19865 1.00671 1.50216 1.20663 0.93616 0.86525 1.01242 1.19928 0.99835 0.97892 0.91944 1.21350 0.98109 0.96022 0.97115 1.21396 0.95585 0.96739 0.98605 1.21382 1.01145 1.01231 0.90113 1.19437 0.96125 0.97099 0.87451 1.19203 0.97612 0.94149 0.86672 1.86268 1.40088 1.63540 1.35467 1.22638 0.89103 0.92212 0.97075 1.22474 1.00216 0.99306 0.99993 1.22848 0.90637 0.90896 0.97420 1.86301 1.59811 1.43499 1.36085 0.92762 0.99045 0.99213 0.93026 0.92965 0.95519 0.92421 0.83866 0.93104 0.91417 0.83288 0.81819 0.83043 0.92624 0.88152 0.90818 0.86760 0.85552 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.38 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.72 5.41 30.60 0.17 -3.56 16 11 C 0.07 2.61 5.69 86.30 0.49 3.10 16 12 N -0.68 -19.81 6.49 -517.94 -3.36 -23.17 16 13 C 0.11 2.83 5.49 85.56 0.47 3.30 16 14 C -0.09 -2.30 5.40 -19.78 -0.11 -2.41 16 15 C -0.11 -1.96 9.67 22.30 0.22 -1.74 16 16 C -0.11 -1.60 10.04 22.30 0.22 -1.38 16 17 C -0.12 -2.18 10.01 22.35 0.22 -1.96 16 18 C 0.04 1.02 5.73 22.45 0.13 1.15 16 19 C 0.07 1.83 5.70 22.45 0.13 1.96 16 20 O -0.34 -9.89 9.42 -84.10 -0.79 -10.68 16 21 C 0.06 1.52 6.51 71.67 0.47 1.99 16 22 C -0.18 -3.22 5.92 29.98 0.18 -3.04 16 23 C 0.06 0.96 6.51 71.67 0.47 1.43 16 24 O -0.34 -8.07 10.16 -84.23 -0.86 -8.92 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.05 2.17 8.14 -2.38 -0.02 2.16 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.34 9.16 8.72 -89.69 -0.78 8.37 16 33 H 0.05 1.19 8.01 -2.39 -0.02 1.17 16 34 H 0.07 2.01 7.87 -2.39 -0.02 1.99 16 35 H 0.15 2.05 8.04 -2.91 -0.02 2.03 16 36 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.15 2.05 8.06 -2.92 -0.02 2.02 16 38 H 0.06 1.36 7.93 -2.39 -0.02 1.34 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 0.98 7.93 -2.39 -0.02 0.96 16 Total: -1.00 -69.96 353.94 1.40 -68.56 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.20 Total: 15.50 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 3.89 Total: -30.48 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.08 Total: -80.52 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.65 Total: -19.61 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.96 1.40 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348848455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.199 kcal (2) G-P(sol) polarization free energy of solvation -69.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds