Wall clock time and date at job start Tue Mar 31 2020 07:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47068 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 120.00225 * 3 2 1 7 7 C 1.37874 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00592 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46808 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00191 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00459 * 179.97438 * 13 12 11 16 16 O 1.42893 * 109.47627 * 179.97438 * 15 13 12 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46534 * 60.00545 * 9 7 2 27 27 H 1.08993 * 109.47314 * 300.00632 * 9 7 2 28 28 H 1.08993 * 109.47328 * 60.00371 * 10 9 7 29 29 H 1.09001 * 109.47125 * 300.00088 * 10 9 7 30 30 H 1.08998 * 109.47651 * 59.99673 * 11 10 9 31 31 H 1.09001 * 109.46985 * 299.99728 * 11 10 9 32 32 H 0.96996 * 120.00105 * 359.97438 * 12 11 10 33 33 H 1.09006 * 109.46845 * 59.99606 * 15 13 12 34 34 H 1.08998 * 109.46993 * 300.00606 * 15 13 12 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7908 -7.5929 -0.0024 15 6 2.9624 -8.5167 -0.0014 16 8 2.2480 -9.7543 -0.0019 17 6 3.0879 -10.9103 -0.0013 18 6 2.2207 -12.1708 -0.0026 19 6 3.1066 -13.3900 -0.0026 20 6 3.5120 -13.9498 1.1946 21 6 4.3241 -15.0684 1.1946 22 6 4.7302 -15.6277 -0.0026 23 6 4.3292 -15.0648 -1.1997 24 6 3.5133 -13.9489 -1.1997 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8913 31 1 0.8534 -5.0451 0.8886 32 1 3.3860 -5.9234 -0.0002 33 1 3.5886 -8.4594 0.8890 34 1 3.5897 -8.4585 -0.8909 35 1 3.7166 -10.9023 0.8890 36 1 3.7178 -10.9022 -0.8909 37 1 1.5924 -12.1787 -0.8932 38 1 1.5906 -12.1792 0.8868 39 1 3.1943 -13.5131 2.1299 40 1 4.6411 -15.5055 2.1299 41 1 5.3644 -16.5019 -0.0025 42 1 4.6501 -15.4991 -2.1350 43 1 3.1960 -13.5120 -2.1350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349300085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:19 Heat of formation + Delta-G solvation = -81.983437 kcal Electronic energy + Delta-G solvation = -21034.140561 eV Core-core repulsion = 17657.429532 eV Total energy + Delta-G solvation = -3376.711029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.83055 -39.52347 -37.76162 -35.37489 -33.81041 -33.32785 -31.36024 -31.28631 -29.54582 -27.92797 -26.09260 -23.81458 -22.97171 -22.95654 -21.32647 -20.77107 -20.02261 -17.37140 -17.12954 -16.78468 -16.69911 -16.24850 -15.61753 -15.46240 -15.18325 -14.99590 -14.48620 -14.25230 -14.06967 -13.77186 -13.40057 -13.28492 -12.97510 -12.69107 -12.28346 -11.86026 -11.85640 -11.62421 -11.62008 -11.44727 -11.27884 -10.89071 -10.74244 -10.63360 -9.94948 -9.87692 -9.83926 -9.37124 -9.31934 -9.14605 -9.11070 -8.80685 -8.37575 -6.02186 -4.05622 0.92136 1.00065 2.73272 2.81277 3.31550 3.36447 3.37660 3.38714 3.88223 4.42951 4.43672 4.52070 4.63884 4.71411 4.73735 4.75461 4.92116 4.99557 5.01173 5.08149 5.12377 5.14101 5.33411 5.47955 5.52553 5.68190 5.69666 5.75306 5.76534 6.06475 6.11978 6.14700 6.24132 6.45014 6.58294 6.60376 6.74145 6.86814 6.98739 7.62453 7.67352 7.75186 7.96178 8.35221 8.39037 9.00759 9.58554 11.08990 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.056885 B = 0.001674 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.103182 B =16723.228070 C =16884.333764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.725 5.725 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.045 3.955 16 O -0.363 6.363 17 C 0.067 3.933 18 C -0.080 4.080 19 C -0.081 4.081 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -30.210 -0.004 32.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.378 5.378 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.035 4.035 16 O -0.281 6.281 17 C -0.010 4.010 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.501 -30.260 -0.004 32.030 hybrid contribution 1.297 1.044 0.000 1.665 sum 11.798 -29.216 -0.003 31.508 Atomic orbital electron populations 1.69956 1.06055 1.26815 1.50379 1.25029 0.94861 0.99293 0.95245 0.86636 0.79552 0.83090 0.78565 1.20255 1.21255 1.20261 1.21166 0.92952 0.90958 1.51177 0.92694 1.19032 0.93863 0.90820 0.97718 1.21892 0.99786 0.93276 1.00899 1.21667 0.91807 0.84844 1.02142 1.46102 1.10917 1.05528 1.75280 1.20192 0.89567 0.83788 0.77320 1.90733 1.16611 1.84530 1.48012 1.22219 0.94068 0.84689 1.02486 1.87997 1.32433 1.12210 1.95447 1.22497 0.92964 0.84939 1.00572 1.20466 0.96905 0.89602 1.04787 1.19756 0.98292 0.96657 0.93383 1.21132 0.98078 0.96329 0.97717 1.21173 0.98076 0.96293 0.98191 1.21185 1.00271 1.00105 0.92662 1.21174 0.98062 0.96305 0.98191 1.21131 0.98040 0.96367 0.97717 0.92857 0.96227 0.96232 0.92679 0.92688 0.91658 0.91666 0.76794 0.90355 0.90349 0.92988 0.92997 0.89786 0.89783 0.85857 0.86001 0.86134 0.86000 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.73 -10.15 5.56 -60.29 -0.33 -10.49 16 13 C 0.51 7.65 7.91 -10.99 -0.09 7.56 16 14 O -0.52 -10.51 16.50 -14.35 -0.24 -10.74 16 15 C 0.05 0.48 6.42 36.01 0.23 0.71 16 16 O -0.36 -4.54 9.87 -55.14 -0.54 -5.09 16 17 C 0.07 0.59 5.92 37.15 0.22 0.81 16 18 C -0.08 -0.66 5.71 -27.88 -0.16 -0.82 16 19 C -0.08 -0.63 5.13 -104.62 -0.54 -1.16 16 20 C -0.11 -0.83 9.70 -39.58 -0.38 -1.22 16 21 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 22 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 23 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 24 C -0.11 -0.83 9.70 -39.58 -0.38 -1.22 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -34.35 369.60 -9.91 -44.25 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.07 Total: -1.63 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.01 Total: -12.23 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.40 Total: -36.52 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.78 Total: -15.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.35 -9.91 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.731 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds