Wall clock time and date at job start Tue Mar 31 2020 07:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47068 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 120.00225 * 3 2 1 7 7 C 1.37874 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00592 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46808 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00191 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00459 * 179.97438 * 13 12 11 16 16 O 1.42893 * 109.47627 * 179.97438 * 15 13 12 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46534 * 60.00545 * 9 7 2 27 27 H 1.08993 * 109.47314 * 300.00632 * 9 7 2 28 28 H 1.08993 * 109.47328 * 60.00371 * 10 9 7 29 29 H 1.09001 * 109.47125 * 300.00088 * 10 9 7 30 30 H 1.08998 * 109.47651 * 59.99673 * 11 10 9 31 31 H 1.09001 * 109.46985 * 299.99728 * 11 10 9 32 32 H 0.96996 * 120.00105 * 359.97438 * 12 11 10 33 33 H 1.09006 * 109.46845 * 59.99606 * 15 13 12 34 34 H 1.08998 * 109.46993 * 300.00606 * 15 13 12 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7908 -7.5929 -0.0024 15 6 2.9624 -8.5167 -0.0014 16 8 2.2480 -9.7543 -0.0019 17 6 3.0879 -10.9103 -0.0013 18 6 2.2207 -12.1708 -0.0026 19 6 3.1066 -13.3900 -0.0026 20 6 3.5120 -13.9498 1.1946 21 6 4.3241 -15.0684 1.1946 22 6 4.7302 -15.6277 -0.0026 23 6 4.3292 -15.0648 -1.1997 24 6 3.5133 -13.9489 -1.1997 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8913 31 1 0.8534 -5.0451 0.8886 32 1 3.3860 -5.9234 -0.0002 33 1 3.5886 -8.4594 0.8890 34 1 3.5897 -8.4585 -0.8909 35 1 3.7166 -10.9023 0.8890 36 1 3.7178 -10.9022 -0.8909 37 1 1.5924 -12.1787 -0.8932 38 1 1.5906 -12.1792 0.8868 39 1 3.1943 -13.5131 2.1299 40 1 4.6411 -15.5055 2.1299 41 1 5.3644 -16.5019 -0.0025 42 1 4.6501 -15.4991 -2.1350 43 1 3.1960 -13.5120 -2.1350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349300085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:15 Heat of formation + Delta-G solvation = -102.699739 kcal Electronic energy + Delta-G solvation = -21035.038888 eV Core-core repulsion = 17657.429532 eV Total energy + Delta-G solvation = -3377.609355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.84109 -40.21074 -38.63612 -36.92295 -35.19876 -34.41470 -33.11708 -31.76167 -30.39813 -29.07731 -27.57930 -24.83257 -24.34508 -23.45206 -22.32773 -21.91388 -21.38000 -18.59924 -18.16574 -17.97860 -17.51161 -17.36474 -16.65360 -16.58695 -16.34181 -15.97372 -15.82206 -15.32172 -15.23561 -14.37269 -14.28120 -14.15468 -13.92077 -13.84980 -13.75449 -13.41592 -13.38433 -12.71169 -12.55334 -12.41590 -12.38121 -12.30924 -11.94336 -11.80205 -11.66591 -11.57721 -11.25183 -10.82124 -10.69689 -10.54243 -10.12881 -9.81148 -9.63647 -8.18702 -6.30596 0.41488 0.50903 1.42410 1.45527 1.53400 1.56713 1.82434 2.42696 2.81106 3.06208 3.14976 3.75271 3.89560 3.97886 4.15962 4.17983 4.18372 4.20081 4.20716 4.31767 4.32541 4.32967 4.47080 4.54973 4.62961 4.65742 4.93587 4.94310 4.95779 4.98878 5.17504 5.18903 5.19424 5.40852 5.52587 5.58598 5.64469 5.70940 5.71925 5.84538 6.06199 6.13040 6.22450 6.58438 6.86917 7.24186 7.39151 8.93122 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.056885 B = 0.001674 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.103182 B =16723.228070 C =16884.333764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.582 6.582 15 C 0.052 3.948 16 O -0.398 6.398 17 C 0.068 3.932 18 C -0.078 4.078 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.127 4.127 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.958 -30.943 -0.003 34.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.289 3.711 14 O -0.462 6.462 15 C -0.027 4.027 16 O -0.318 6.318 17 C -0.008 4.008 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.257 0.743 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.767 -31.006 -0.004 33.925 hybrid contribution 0.283 1.202 0.000 1.235 sum 14.051 -29.804 -0.003 32.950 Atomic orbital electron populations 1.70112 1.07985 1.27839 1.51594 1.26039 0.95741 1.03605 0.94753 0.85453 0.78158 0.77855 0.79274 1.18988 1.21254 1.18998 1.21667 0.93814 0.91974 1.50611 0.91369 1.18961 0.94527 0.93100 0.95043 1.21593 0.98395 0.91497 1.02359 1.21237 0.92017 0.85560 1.00607 1.45829 1.11426 1.04533 1.74617 1.21098 0.89632 0.84782 0.75545 1.90711 1.19420 1.85362 1.50682 1.22294 0.92556 0.82252 1.05621 1.87956 1.34482 1.13515 1.95809 1.22627 0.92747 0.83628 1.01827 1.20414 0.96950 0.90122 1.04015 1.19754 0.98726 0.96694 0.93929 1.21314 0.98449 0.96830 0.97883 1.21451 0.97750 0.96058 0.99201 1.21504 1.00217 1.00616 0.92489 1.21452 0.97737 0.96069 0.99201 1.21312 0.98413 0.96868 0.97882 0.92853 0.99027 0.99032 0.91088 0.91098 0.93375 0.93386 0.74308 0.86992 0.86984 0.91625 0.91634 0.90581 0.90578 0.85210 0.84299 0.84191 0.84298 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.13 4.58 5.67 86.38 0.49 5.07 16 12 N -0.71 -18.77 5.56 -463.06 -2.57 -21.34 16 13 C 0.50 14.66 7.91 87.66 0.69 15.36 16 14 O -0.58 -23.88 16.50 16.00 0.26 -23.61 16 15 C 0.05 0.97 6.42 71.24 0.46 1.42 16 16 O -0.40 -9.49 9.87 -129.94 -1.28 -10.77 16 17 C 0.07 1.07 5.92 71.98 0.43 1.50 16 18 C -0.08 -1.26 5.71 29.85 0.17 -1.09 16 19 C -0.09 -1.34 5.13 -19.86 -0.10 -1.45 16 20 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 21 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 22 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 23 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 24 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.42 7.57 8.47 -92.71 -0.79 6.78 16 33 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 38 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 39 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -76.55 369.60 3.15 -73.40 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.19 Total: 11.60 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.24 Total: -17.91 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.29 Total: -78.29 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.02 Total: -34.39 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.55 3.15 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.303 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds