Wall clock time and date at job start Tue Mar 31 2020 08:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47297 * 269.99589 * 3 2 1 5 5 H 1.48498 * 109.47354 * 29.99718 * 3 2 1 6 6 H 1.48501 * 109.47389 * 149.99839 * 3 2 1 7 7 C 1.37881 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99764 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99954 * 180.02562 * 7 2 1 10 10 O 1.42901 * 113.26173 * 312.95511 * 9 7 2 11 11 C 1.53514 * 114.17302 * 180.02562 * 9 7 2 12 12 N 1.47478 * 87.93401 * 220.14413 * 11 9 7 13 13 C 1.46896 * 111.00317 * 138.70489 * 12 11 9 14 14 C 1.53002 * 109.47250 * 169.99919 * 13 12 11 15 15 C 1.52996 * 109.46972 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46969 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47079 * 179.97438 * 16 15 14 18 18 C 1.35905 * 116.99842 * 180.02562 * 17 16 15 19 19 C 1.38729 * 120.05486 * 359.72976 * 18 17 16 20 20 C 1.38146 * 119.94131 * 179.74173 * 19 18 17 21 21 C 1.38261 * 120.05612 * 0.50778 * 20 19 18 22 22 C 1.38262 * 120.11084 * 359.77089 * 21 20 19 23 23 C 1.38145 * 120.05938 * 359.97279 * 22 21 20 24 24 C 1.47475 * 87.83801 * 27.00462 * 12 11 9 25 25 H 0.97001 * 119.99658 * 0.02562 * 1 2 3 26 26 H 0.96705 * 113.99383 * 47.04224 * 10 9 7 27 27 H 1.08998 * 113.48260 * 105.37209 * 11 9 7 28 28 H 1.09010 * 113.52644 * 334.91720 * 11 9 7 29 29 H 1.08996 * 109.47530 * 49.99241 * 13 12 11 30 30 H 1.09000 * 109.46698 * 289.99571 * 13 12 11 31 31 H 1.08996 * 109.47407 * 59.99247 * 14 13 12 32 32 H 1.09000 * 109.46986 * 299.99475 * 14 13 12 33 33 H 1.09004 * 109.47298 * 59.99824 * 15 14 13 34 34 H 1.09004 * 109.47552 * 299.99695 * 15 14 13 35 35 H 1.09004 * 109.46930 * 59.99996 * 16 15 14 36 36 H 1.09000 * 109.47312 * 299.99939 * 16 15 14 37 37 H 1.08000 * 120.03286 * 359.97438 * 19 18 17 38 38 H 1.08005 * 119.97238 * 180.27362 * 20 19 18 39 39 H 1.08001 * 119.94699 * 179.74310 * 21 20 19 40 40 H 1.07999 * 119.97562 * 180.02562 * 22 21 20 41 41 H 1.07990 * 120.03151 * 179.97438 * 23 22 21 42 42 H 1.09000 * 113.47596 * 87.76026 * 24 12 11 43 43 H 1.08995 * 113.48323 * 218.22620 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0762 -0.2997 -0.9597 11 6 4.1401 -2.5946 0.0010 12 7 5.1458 -2.0850 0.9517 13 6 5.4198 -3.0699 2.0066 14 6 6.6334 -2.6195 2.8222 15 6 6.9184 -3.6450 3.9212 16 6 8.1324 -3.1949 4.7364 17 8 8.3982 -4.1525 5.7633 18 6 9.4521 -3.9009 6.5837 19 6 10.2181 -2.7589 6.4004 20 6 11.2857 -2.5028 7.2389 21 6 11.5973 -3.3888 8.2536 22 6 10.8389 -4.5305 8.4347 23 6 9.7671 -4.7886 7.6022 24 6 4.1438 -1.0987 1.3967 25 1 -0.4850 0.8401 -0.0004 26 1 3.6784 0.5817 -0.9579 27 1 4.5601 -2.8821 -0.9628 28 1 3.4923 -3.3624 0.4243 29 1 5.6259 -4.0396 1.5537 30 1 4.5522 -3.1518 2.6614 31 1 6.4273 -1.6498 3.2751 32 1 7.5010 -2.5376 2.1674 33 1 7.1244 -4.6150 3.4686 34 1 6.0507 -3.7266 4.5760 35 1 7.9267 -2.2249 5.1890 36 1 8.9999 -3.1137 4.0815 37 1 9.9779 -2.0687 5.6052 38 1 11.8797 -1.6116 7.0994 39 1 12.4348 -3.1889 8.9055 40 1 11.0841 -5.2209 9.2282 41 1 9.1754 -5.6808 7.7438 42 1 3.4963 -1.4664 2.1928 43 1 4.5667 -0.1183 1.6157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351488536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:36 Heat of formation + Delta-G solvation = -40.837997 kcal Electronic energy + Delta-G solvation = -22131.250780 eV Core-core repulsion = 18756.323951 eV Total energy + Delta-G solvation = -3374.926829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24981 -41.02648 -38.50099 -37.13866 -35.35845 -34.54839 -32.03113 -31.39152 -30.35721 -28.55136 -26.89740 -26.09887 -23.98224 -23.27273 -22.32065 -21.91983 -20.89793 -19.35606 -19.15771 -18.18436 -17.38365 -17.09443 -16.92004 -16.65027 -16.35237 -15.62976 -15.36033 -15.33072 -15.09304 -14.75770 -14.45182 -14.34553 -14.17592 -13.92656 -13.62222 -13.16920 -13.07461 -12.87125 -12.58203 -12.49372 -12.39399 -12.30098 -12.02681 -11.88919 -11.71671 -11.66289 -11.43605 -11.11744 -10.93196 -10.41765 -9.95971 -9.77121 -9.17925 -8.45855 -6.55670 0.38576 0.48728 1.20925 1.27352 1.36561 2.14974 2.15732 2.76956 2.84431 3.06270 3.51013 3.77871 3.84217 3.92859 3.95705 4.01704 4.08138 4.13386 4.24740 4.29994 4.32872 4.44626 4.50486 4.58407 4.58857 4.66161 4.71010 4.77149 4.83519 4.90459 4.93807 5.08447 5.10390 5.15714 5.28969 5.33495 5.37750 5.45079 5.48228 5.59916 5.87125 6.00625 6.21911 6.44751 6.48922 6.75106 7.11858 8.69993 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.002327 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.306706 B =12029.801889 C =12286.291492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.021 3.979 3 Si 0.924 3.076 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.181 3.819 10 O -0.554 6.554 11 C 0.023 3.977 12 N -0.471 5.471 13 C 0.015 3.985 14 C -0.095 4.095 15 C -0.108 4.108 16 C 0.062 3.938 17 O -0.333 6.333 18 C 0.107 3.893 19 C -0.223 4.223 20 C -0.088 4.088 21 C -0.165 4.165 22 C -0.084 4.084 23 C -0.172 4.172 24 C -0.023 4.023 25 H 0.273 0.727 26 H 0.350 0.650 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.412 -5.628 15.579 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.179 4.179 3 Si 0.749 3.251 4 H -0.179 1.179 5 H -0.209 1.209 6 H -0.162 1.162 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.140 3.860 10 O -0.366 6.366 11 C -0.106 4.106 12 N -0.193 5.193 13 C -0.113 4.113 14 C -0.133 4.133 15 C -0.146 4.146 16 C -0.013 4.013 17 O -0.247 6.247 18 C 0.061 3.939 19 C -0.242 4.242 20 C -0.106 4.106 21 C -0.183 4.183 22 C -0.102 4.102 23 C -0.191 4.191 24 C -0.152 4.152 25 H 0.082 0.918 26 H 0.202 0.798 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.150 -6.018 15.230 28.357 hybrid contribution -1.511 1.007 0.162 1.823 sum 21.639 -5.011 15.392 27.024 Atomic orbital electron populations 1.70008 1.07917 1.28692 1.49921 1.25874 0.95721 1.03077 0.93212 0.86246 0.79690 0.79167 0.80035 1.17884 1.20919 1.16193 1.21491 0.90360 0.94218 1.52107 0.93155 1.20247 0.90074 0.89470 0.86160 1.86456 1.64209 1.24969 1.60938 1.23843 0.92792 0.95975 0.97954 1.68805 1.29501 1.10033 1.10956 1.22748 0.98331 0.96397 0.93853 1.21218 0.97835 0.98252 0.95998 1.21406 0.96770 0.99953 0.96498 1.22882 0.98885 0.91387 0.88132 1.86022 1.46184 1.49329 1.43212 1.19370 0.87896 0.94974 0.91609 1.21521 0.99664 0.98729 1.04249 1.21315 0.95641 0.99729 0.93904 1.21445 1.01814 0.95269 0.99801 1.21324 0.93181 0.97525 0.98134 1.20736 1.01075 1.00773 0.96522 1.24791 0.93275 0.97725 0.99421 0.91815 0.79793 0.90073 0.90410 0.90052 0.93848 0.92161 0.90726 0.90377 0.91161 0.91543 0.91020 0.84795 0.83779 0.83506 0.82952 0.84904 0.90994 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 2 C 0.02 1.19 5.47 84.66 0.46 1.66 16 3 Si 0.92 40.90 24.41 68.60 1.67 42.58 16 4 H -0.25 -10.60 7.06 99.48 0.70 -9.90 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.24 -9.81 5.47 99.48 0.54 -9.27 16 7 C -0.54 -30.18 9.28 25.60 0.24 -29.94 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 9 C 0.18 8.58 1.09 -11.20 -0.01 8.57 16 10 O -0.55 -26.73 13.32 -148.98 -1.98 -28.72 16 11 C 0.02 0.94 7.09 83.57 0.59 1.53 16 12 N -0.47 -17.33 6.33 -928.26 -5.88 -23.21 16 13 C 0.02 0.44 4.82 86.30 0.42 0.85 16 14 C -0.10 -2.22 5.54 30.59 0.17 -2.05 16 15 C -0.11 -2.16 5.58 30.59 0.17 -1.99 16 16 C 0.06 1.19 4.74 71.98 0.34 1.53 16 17 O -0.33 -7.65 10.14 -92.49 -0.94 -8.59 16 18 C 0.11 2.27 6.69 22.51 0.15 2.42 16 19 C -0.22 -4.11 9.04 22.37 0.20 -3.91 16 20 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 21 C -0.17 -2.19 10.04 22.28 0.22 -1.97 16 22 C -0.08 -1.19 10.04 22.25 0.22 -0.96 16 23 C -0.17 -3.20 9.99 22.37 0.22 -2.97 16 24 C -0.02 -0.93 6.55 83.57 0.55 -0.38 16 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.35 15.98 3.17 -74.05 -0.23 15.74 16 27 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.08 3.03 7.87 -2.38 -0.02 3.02 16 29 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 30 H 0.04 1.27 7.30 -2.39 -0.02 1.26 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.21 7.67 -2.38 -0.02 1.19 16 36 H 0.07 1.23 7.65 -2.39 -0.02 1.22 16 37 H 0.13 2.17 6.30 -2.91 -0.02 2.15 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.13 2.22 8.06 -2.92 -0.02 2.20 16 42 H 0.07 2.94 7.38 -2.39 -0.02 2.93 16 43 H 0.07 2.87 7.11 -2.39 -0.02 2.85 16 Total: -1.00 -65.18 345.63 -2.07 -67.25 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.59 Total: 34.28 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.17 Total: -28.69 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -5.58 Total: -78.11 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -2.92 Total: -37.31 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.67 Total: 42.58 kcal Total: -65.18 -2.07 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351488536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.411 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds