Wall clock time and date at job start Tue Mar 31 2020 08:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48502 * 109.46986 * 239.99765 * 3 2 1 5 5 H 1.48492 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47100 * 120.00183 * 3 2 1 7 7 C 1.37883 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.47967 * 111.00177 * 169.99819 * 10 9 7 12 12 C 1.53934 * 86.18229 * 222.42116 * 11 10 9 13 13 O 1.42903 * 113.73434 * 269.25624 * 12 11 10 14 14 C 1.42891 * 114.00030 * 208.10258 * 13 12 11 15 15 C 1.52998 * 109.47249 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47325 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.35902 * 116.99753 * 180.02562 * 17 16 15 19 19 C 1.38733 * 120.05535 * 359.72609 * 18 17 16 20 20 C 1.38145 * 119.93957 * 179.74626 * 19 18 17 21 21 C 1.38269 * 120.05690 * 0.50792 * 20 19 18 22 22 C 1.38260 * 120.10844 * 359.76938 * 21 20 19 23 23 C 1.38139 * 120.05957 * 359.97438 * 22 21 20 24 24 C 1.48193 * 111.06841 * 70.57068 * 10 9 7 25 25 H 0.96995 * 119.99693 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47022 * 60.00100 * 9 7 2 27 27 H 1.08996 * 109.47553 * 300.00174 * 9 7 2 28 28 H 1.09001 * 113.75575 * 108.09971 * 11 10 9 29 29 H 1.08993 * 113.75515 * 336.74204 * 11 10 9 30 30 H 1.09002 * 113.73279 * 138.08098 * 12 11 10 31 31 H 1.09010 * 109.46951 * 299.99828 * 14 13 12 32 32 H 1.08998 * 109.47675 * 59.99931 * 14 13 12 33 33 H 1.09000 * 109.47142 * 299.99884 * 15 14 13 34 34 H 1.09004 * 109.47224 * 60.00014 * 15 14 13 35 35 H 1.09000 * 109.47050 * 300.00104 * 16 15 14 36 36 H 1.09004 * 109.46824 * 59.99933 * 16 15 14 37 37 H 1.07999 * 120.02755 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.97204 * 180.27581 * 20 19 18 39 39 H 1.07996 * 119.94051 * 179.75016 * 21 20 19 40 40 H 1.08005 * 119.96656 * 179.97438 * 22 21 20 41 41 H 1.08007 * 120.02774 * 179.97438 * 23 22 21 42 42 H 1.09000 * 113.75997 * 23.23547 * 24 10 9 43 43 H 1.09002 * 113.81982 * 251.81037 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5164 -4.9027 0.2425 12 6 2.6936 -5.2407 1.1749 13 8 3.7702 -5.9152 0.5206 14 6 4.5291 -6.7685 1.3796 15 6 5.6488 -7.4344 0.5773 16 6 6.4618 -8.3476 1.4972 17 8 7.5073 -8.9700 0.7477 18 6 8.3275 -9.8192 1.4207 19 6 8.1337 -10.0443 2.7759 20 6 8.9656 -10.9120 3.4566 21 6 9.9972 -11.5478 2.7907 22 6 10.1960 -11.3206 1.4414 23 6 9.3636 -10.4579 0.7551 24 6 2.9024 -3.7211 1.3051 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 1.4571 -5.5409 -0.6392 29 1 0.5623 -4.7997 0.7593 30 1 2.3923 -5.7234 2.1046 31 1 4.9626 -6.1784 2.1871 32 1 3.8771 -7.5347 1.7990 33 1 5.2157 -8.0243 -0.2305 34 1 6.3008 -6.6679 0.1583 35 1 6.8949 -7.7573 2.3047 36 1 5.8100 -9.1140 1.9166 37 1 7.3308 -9.5445 3.2974 38 1 8.8124 -11.0911 4.5106 39 1 10.6490 -12.2227 3.3256 40 1 11.0028 -11.8182 0.9237 41 1 9.5195 -10.2805 -0.2988 42 1 2.3546 -3.2719 2.1335 43 1 3.9486 -3.4171 1.2709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353011816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:22 Heat of formation + Delta-G solvation = -24.490626 kcal Electronic energy + Delta-G solvation = -21620.801567 eV Core-core repulsion = 18246.583614 eV Total energy + Delta-G solvation = -3374.217954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.42014 -39.40406 -37.87108 -36.63276 -33.20636 -32.61340 -31.31456 -30.03459 -28.98663 -26.11360 -25.60450 -24.80186 -23.17190 -22.41586 -21.76634 -21.29912 -19.30370 -18.59922 -16.82781 -16.71158 -16.38380 -16.18907 -15.90936 -15.42809 -15.21894 -14.77588 -14.40970 -14.04471 -13.80908 -13.65133 -13.43200 -13.18064 -13.11327 -12.37888 -12.13161 -11.96138 -11.90977 -11.73121 -11.54059 -11.17240 -11.11538 -10.96757 -10.88016 -10.65222 -10.53704 -10.36959 -9.59009 -9.36680 -9.21658 -9.16034 -8.54351 -8.46631 -7.66842 -6.03631 -4.05154 0.97787 1.10142 2.71232 3.33622 3.37306 3.41075 3.44303 3.76940 4.42774 4.44138 4.52972 4.58422 4.73518 4.76746 4.82232 4.91057 4.92383 5.02826 5.12237 5.14786 5.23660 5.25665 5.31461 5.32533 5.36646 5.64515 5.81707 5.84785 5.94687 6.01366 6.03183 6.05360 6.17613 6.22721 6.32262 6.42619 6.50880 6.78272 7.09889 7.21373 7.45986 7.67045 7.91521 8.15768 8.46081 9.02357 9.59159 11.07618 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.002009 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.905829 B =13933.712528 C =14329.912602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.061 0.939 9 C 0.158 3.842 10 N -0.468 5.468 11 C -0.002 4.002 12 C 0.056 3.944 13 O -0.350 6.350 14 C 0.066 3.934 15 C -0.119 4.119 16 C 0.064 3.936 17 O -0.312 6.312 18 C 0.133 3.867 19 C -0.211 4.211 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.081 4.081 23 C -0.154 4.154 24 C 0.003 3.997 25 H 0.262 0.738 26 H 0.032 0.968 27 H -0.003 1.003 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.816 -23.570 7.851 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.032 3.968 10 N -0.192 5.192 11 C -0.131 4.131 12 C -0.003 4.003 13 O -0.269 6.269 14 C -0.012 4.012 15 C -0.156 4.156 16 C -0.011 4.011 17 O -0.226 6.226 18 C 0.088 3.912 19 C -0.229 4.229 20 C -0.099 4.099 21 C -0.181 4.181 22 C -0.099 4.099 23 C -0.173 4.173 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.015 0.985 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.047 -23.230 6.832 29.048 hybrid contribution -0.377 0.998 1.241 1.636 sum 15.670 -22.232 8.072 28.372 Atomic orbital electron populations 1.69946 1.06061 1.26897 1.50915 1.25000 0.94893 0.99372 0.95340 0.86539 0.79434 0.82624 0.78702 1.20103 1.21321 1.20280 1.21070 0.93435 0.89986 1.50295 0.92049 1.20231 0.91113 0.89025 0.96469 1.68640 1.20713 1.01609 1.28192 1.24135 0.94781 0.95251 0.98946 1.23734 0.88301 0.93262 0.94963 1.87967 1.44020 1.60064 1.34834 1.22263 0.92826 0.93034 0.93045 1.21362 0.96476 0.98903 0.98897 1.22671 0.88000 0.95700 0.94710 1.86069 1.41556 1.56561 1.38377 1.19065 0.90895 0.90539 0.90751 1.21315 1.03666 1.04159 0.93797 1.20973 0.94156 0.95024 0.99728 1.21073 0.99646 1.02441 0.94937 1.20984 0.98129 0.96485 0.94347 1.20497 0.95780 1.00083 1.00913 1.24212 1.01411 0.93021 0.94030 0.92861 0.94956 0.98490 0.89758 0.91073 0.91683 0.93142 0.93371 0.89842 0.89635 0.91666 0.91778 0.85392 0.85815 0.85970 0.85383 0.85115 0.90960 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.75 8.84 -34.44 -0.30 -15.05 16 8 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 9 C 0.16 4.23 4.58 -4.98 -0.02 4.21 16 10 N -0.47 -10.71 6.25 -239.73 -1.50 -12.21 16 11 C 0.00 -0.03 7.81 -2.76 -0.02 -0.05 16 12 C 0.06 0.90 4.48 -25.80 -0.12 0.78 16 13 O -0.35 -5.57 10.36 -35.23 -0.37 -5.93 16 14 C 0.07 0.73 5.79 37.16 0.21 0.95 16 15 C -0.12 -1.23 5.95 -26.73 -0.16 -1.39 16 16 C 0.06 0.56 4.74 37.16 0.18 0.74 16 17 O -0.31 -3.38 10.14 -19.43 -0.20 -3.58 16 18 C 0.13 1.33 6.69 -39.22 -0.26 1.07 16 19 C -0.21 -1.81 9.04 -39.43 -0.36 -2.16 16 20 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 21 C -0.16 -1.15 10.04 -39.56 -0.40 -1.55 16 22 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 23 C -0.15 -1.38 9.99 -39.44 -0.39 -1.78 16 24 C 0.00 0.05 7.32 -2.63 -0.02 0.03 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.00 -0.07 7.70 -51.93 -0.40 -0.47 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.24 7.79 -51.93 -0.40 0.84 16 30 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.50 7.65 -51.93 -0.40 0.11 16 36 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 37 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.07 1.42 7.79 -51.93 -0.40 1.01 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -32.73 359.83 -10.42 -43.15 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.94 Total: -2.87 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.55 Total: -14.69 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.76 Total: -38.49 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.56 Total: -9.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.73 -10.42 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353011816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.660 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds