Wall clock time and date at job start Tue Mar 31 2020 08:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48502 * 109.46986 * 239.99765 * 3 2 1 5 5 H 1.48492 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47100 * 120.00183 * 3 2 1 7 7 C 1.37883 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.47967 * 111.00177 * 169.99819 * 10 9 7 12 12 C 1.53934 * 86.18229 * 222.42116 * 11 10 9 13 13 O 1.42903 * 113.73434 * 269.25624 * 12 11 10 14 14 C 1.42891 * 114.00030 * 208.10258 * 13 12 11 15 15 C 1.52998 * 109.47249 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47325 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.35902 * 116.99753 * 180.02562 * 17 16 15 19 19 C 1.38733 * 120.05535 * 359.72609 * 18 17 16 20 20 C 1.38145 * 119.93957 * 179.74626 * 19 18 17 21 21 C 1.38269 * 120.05690 * 0.50792 * 20 19 18 22 22 C 1.38260 * 120.10844 * 359.76938 * 21 20 19 23 23 C 1.38139 * 120.05957 * 359.97438 * 22 21 20 24 24 C 1.48193 * 111.06841 * 70.57068 * 10 9 7 25 25 H 0.96995 * 119.99693 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47022 * 60.00100 * 9 7 2 27 27 H 1.08996 * 109.47553 * 300.00174 * 9 7 2 28 28 H 1.09001 * 113.75575 * 108.09971 * 11 10 9 29 29 H 1.08993 * 113.75515 * 336.74204 * 11 10 9 30 30 H 1.09002 * 113.73279 * 138.08098 * 12 11 10 31 31 H 1.09010 * 109.46951 * 299.99828 * 14 13 12 32 32 H 1.08998 * 109.47675 * 59.99931 * 14 13 12 33 33 H 1.09000 * 109.47142 * 299.99884 * 15 14 13 34 34 H 1.09004 * 109.47224 * 60.00014 * 15 14 13 35 35 H 1.09000 * 109.47050 * 300.00104 * 16 15 14 36 36 H 1.09004 * 109.46824 * 59.99933 * 16 15 14 37 37 H 1.07999 * 120.02755 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.97204 * 180.27581 * 20 19 18 39 39 H 1.07996 * 119.94051 * 179.75016 * 21 20 19 40 40 H 1.08005 * 119.96656 * 179.97438 * 22 21 20 41 41 H 1.08007 * 120.02774 * 179.97438 * 23 22 21 42 42 H 1.09000 * 113.75997 * 23.23547 * 24 10 9 43 43 H 1.09002 * 113.81982 * 251.81037 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5164 -4.9027 0.2425 12 6 2.6936 -5.2407 1.1749 13 8 3.7702 -5.9152 0.5206 14 6 4.5291 -6.7685 1.3796 15 6 5.6488 -7.4344 0.5773 16 6 6.4618 -8.3476 1.4972 17 8 7.5073 -8.9700 0.7477 18 6 8.3275 -9.8192 1.4207 19 6 8.1337 -10.0443 2.7759 20 6 8.9656 -10.9120 3.4566 21 6 9.9972 -11.5478 2.7907 22 6 10.1960 -11.3206 1.4414 23 6 9.3636 -10.4579 0.7551 24 6 2.9024 -3.7211 1.3051 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 1.4571 -5.5409 -0.6392 29 1 0.5623 -4.7997 0.7593 30 1 2.3923 -5.7234 2.1046 31 1 4.9626 -6.1784 2.1871 32 1 3.8771 -7.5347 1.7990 33 1 5.2157 -8.0243 -0.2305 34 1 6.3008 -6.6679 0.1583 35 1 6.8949 -7.7573 2.3047 36 1 5.8100 -9.1140 1.9166 37 1 7.3308 -9.5445 3.2974 38 1 8.8124 -11.0911 4.5106 39 1 10.6490 -12.2227 3.3256 40 1 11.0028 -11.8182 0.9237 41 1 9.5195 -10.2805 -0.2988 42 1 2.3546 -3.2719 2.1335 43 1 3.9486 -3.4171 1.2709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353011816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:18 Heat of formation + Delta-G solvation = -46.319530 kcal Electronic energy + Delta-G solvation = -21621.748140 eV Core-core repulsion = 18246.583614 eV Total energy + Delta-G solvation = -3375.164526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.07813 -40.85418 -38.56468 -37.83422 -35.03251 -33.84104 -31.89440 -31.00446 -30.51118 -27.39755 -27.00930 -26.38712 -23.82533 -23.56705 -23.05761 -22.14193 -20.74389 -19.25290 -18.59925 -17.82109 -17.45330 -17.07692 -16.93085 -16.61757 -16.33348 -16.14222 -15.50436 -15.33641 -15.08381 -14.65339 -14.36445 -14.24571 -14.16909 -13.89050 -13.48566 -13.18266 -13.05391 -12.77916 -12.69204 -12.52151 -12.45428 -12.31577 -12.11414 -12.05651 -11.67801 -11.61603 -11.38308 -11.21258 -10.66352 -10.44891 -9.94012 -9.44902 -9.16741 -8.25141 -6.35820 0.40581 0.50207 1.37913 1.41652 1.49819 1.96486 2.37590 2.72213 2.86200 3.07331 3.38519 3.52678 3.84580 3.87153 3.96972 3.99017 4.08033 4.14809 4.28265 4.36855 4.38589 4.43116 4.48609 4.52828 4.55030 4.59897 4.72151 4.75620 4.77231 4.92790 5.00877 5.03338 5.09504 5.10297 5.16051 5.38141 5.49738 5.52524 5.61948 5.78744 5.88210 6.12570 6.32317 6.44921 6.46867 6.79009 7.33983 8.86195 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.002009 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.905829 B =13933.712528 C =14329.912602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.174 3.826 10 N -0.498 5.498 11 C -0.005 4.005 12 C 0.084 3.916 13 O -0.377 6.377 14 C 0.061 3.939 15 C -0.113 4.113 16 C 0.067 3.933 17 O -0.335 6.335 18 C 0.107 3.893 19 C -0.220 4.220 20 C -0.087 4.087 21 C -0.166 4.166 22 C -0.085 4.085 23 C -0.174 4.174 24 C -0.003 4.003 25 H 0.266 0.734 26 H -0.001 1.001 27 H -0.020 1.020 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.204 -24.714 9.625 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.047 3.953 10 N -0.222 5.222 11 C -0.134 4.134 12 C 0.026 3.974 13 O -0.295 6.295 14 C -0.015 4.015 15 C -0.151 4.151 16 C -0.007 4.007 17 O -0.249 6.249 18 C 0.062 3.938 19 C -0.238 4.238 20 C -0.105 4.105 21 C -0.184 4.184 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.017 0.983 27 H -0.002 1.002 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.450 -24.401 8.612 31.210 hybrid contribution -0.754 1.245 0.678 1.605 sum 16.697 -23.156 9.290 30.021 Atomic orbital electron populations 1.70064 1.07631 1.28090 1.51323 1.25932 0.95838 1.03243 0.94545 0.85419 0.78201 0.77806 0.79097 1.19671 1.20398 1.19023 1.21365 0.93344 0.91427 1.50817 0.92633 1.19890 0.91126 0.90358 0.93964 1.68549 1.20816 1.02017 1.30776 1.24223 0.96109 0.92943 1.00137 1.23405 0.87151 0.91274 0.95615 1.87935 1.44296 1.60715 1.36597 1.22509 0.92994 0.93252 0.92786 1.21278 0.96211 0.98566 0.99060 1.22674 0.87882 0.95957 0.94220 1.86018 1.42269 1.57175 1.39463 1.19335 0.91493 0.91283 0.91649 1.21539 1.04367 1.04570 0.93336 1.21331 0.93825 0.94429 1.00910 1.21449 0.99686 1.02302 0.94925 1.21302 0.98242 0.95934 0.94800 1.20728 0.96348 1.00919 1.01281 1.24255 1.00454 0.96277 0.92214 0.92525 0.98293 1.00200 0.89300 0.90229 0.87394 0.91810 0.90678 0.90672 0.91407 0.90528 0.90040 0.84138 0.83561 0.83606 0.83201 0.85206 0.91279 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.53 -31.43 8.84 25.60 0.23 -31.21 16 8 H 0.06 3.27 7.80 -2.91 -0.02 3.25 16 9 C 0.17 9.64 4.58 85.56 0.39 10.03 16 10 N -0.50 -23.15 6.25 -915.58 -5.72 -28.87 16 11 C -0.01 -0.19 7.81 86.41 0.67 0.49 16 12 C 0.08 2.54 4.48 31.24 0.14 2.68 16 13 O -0.38 -11.34 10.36 -148.98 -1.54 -12.88 16 14 C 0.06 1.22 5.79 71.98 0.42 1.63 16 15 C -0.11 -2.24 5.95 30.59 0.18 -2.06 16 16 C 0.07 1.09 4.74 71.98 0.34 1.43 16 17 O -0.33 -7.20 10.14 -92.45 -0.94 -8.14 16 18 C 0.11 2.10 6.69 22.51 0.15 2.25 16 19 C -0.22 -3.43 9.04 22.37 0.20 -3.23 16 20 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 21 C -0.17 -1.97 10.04 22.28 0.22 -1.75 16 22 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 23 C -0.17 -3.08 9.99 22.36 0.22 -2.86 16 24 C 0.00 -0.11 7.32 86.36 0.63 0.53 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H -0.02 -1.13 7.70 -2.39 -0.02 -1.15 16 28 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.08 2.74 7.79 -2.39 -0.02 2.72 16 30 H 0.11 2.41 7.89 -2.39 -0.02 2.39 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.05 7.65 -2.39 -0.02 1.03 16 36 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 37 H 0.14 1.69 6.30 -2.91 -0.02 1.67 16 38 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 39 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.07 2.70 7.79 -2.39 -0.02 2.68 16 43 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -72.17 359.83 -0.21 -72.39 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.97 Total: 9.99 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.71 Total: -23.22 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -5.44 Total: -85.41 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -2.48 Total: -21.02 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.17 -0.21 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353011816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.066 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds