Wall clock time and date at job start Tue Mar 31 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00254 * 2 1 4 4 H 1.48498 * 109.47129 * 90.00333 * 3 2 1 5 5 H 1.48498 * 109.47291 * 210.00452 * 3 2 1 6 6 H 1.48503 * 109.46813 * 330.00441 * 3 2 1 7 7 C 1.37873 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00506 * 186.56689 * 7 2 1 9 9 C 1.50705 * 120.00025 * 6.55948 * 7 2 1 10 10 H 1.08998 * 109.46932 * 30.08568 * 9 7 2 11 11 C 1.52994 * 109.47281 * 150.08844 * 9 7 2 12 12 C 1.50706 * 109.46995 * 294.05789 * 11 9 7 13 13 O 1.21284 * 119.99931 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99980 * 179.97438 * 12 11 9 15 15 C 1.46503 * 119.99939 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47206 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47005 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47025 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47077 * 270.08853 * 9 7 2 21 21 C 1.38232 * 120.00156 * 304.29849 * 20 9 7 22 22 C 1.38227 * 120.00423 * 179.81276 * 21 20 9 23 23 C 1.38243 * 119.99751 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85625 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 0.96995 * 120.00371 * 174.72721 * 1 2 3 27 27 H 1.08999 * 109.47445 * 54.05320 * 11 9 7 28 28 H 1.09002 * 109.47203 * 174.06119 * 11 9 7 29 29 H 0.97001 * 120.00043 * 0.02562 * 14 12 11 30 30 H 1.08997 * 109.47631 * 300.00653 * 15 14 12 31 31 H 1.09002 * 109.46627 * 60.00525 * 15 14 12 32 32 H 1.08999 * 109.46886 * 300.00255 * 16 15 14 33 33 H 1.09001 * 109.46961 * 59.99804 * 16 15 14 34 34 H 1.08999 * 109.46538 * 299.99960 * 17 16 15 35 35 H 1.09002 * 109.46969 * 60.00060 * 17 16 15 36 36 H 1.08997 * 109.47735 * 299.99863 * 18 17 16 37 37 H 1.09002 * 109.47203 * 60.00209 * 18 17 16 38 38 H 0.96703 * 114.00316 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.99790 * 359.97438 * 21 20 9 40 40 H 1.08004 * 120.00499 * 180.23296 * 22 21 20 41 41 H 1.08002 * 119.99679 * 179.83680 * 23 22 21 42 42 H 1.08002 * 119.99754 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1064 9 6 1.2584 -2.4948 -0.1502 10 1 0.3619 -2.3327 -0.7487 11 6 2.1563 -3.5208 -0.8443 12 6 2.4283 -3.0755 -2.2581 13 8 1.9512 -2.0392 -2.6698 14 7 3.2024 -3.8282 -3.0646 15 6 3.4663 -3.3955 -4.4392 16 6 4.3643 -4.4215 -5.1333 17 6 4.6405 -3.9693 -6.5687 18 6 5.5390 -4.9950 -7.2625 19 8 5.7964 -4.5729 -8.6033 20 6 0.8673 -3.0091 1.2113 21 6 1.8337 -3.2050 2.1800 22 6 1.4745 -3.6730 3.4301 23 6 0.1497 -3.9530 3.7088 24 6 -0.8160 -3.7621 2.7384 25 6 -0.4572 -3.2904 1.4896 26 1 -0.4850 -0.8364 -0.0772 27 1 3.0983 -3.6049 -0.3024 28 1 1.6574 -4.4899 -0.8583 29 1 3.5842 -4.6569 -2.7352 30 1 2.5243 -3.3121 -4.9811 31 1 3.9646 -2.4262 -4.4256 32 1 5.3064 -4.5052 -4.5915 33 1 3.8656 -5.3907 -5.1469 34 1 3.6985 -3.8853 -7.1106 35 1 5.1393 -3.0003 -6.5547 36 1 6.4809 -5.0786 -6.7204 37 1 5.0405 -5.9642 -7.2765 38 1 6.3616 -5.1769 -9.1041 39 1 2.8692 -2.9898 1.9610 40 1 2.2291 -3.8225 4.1882 41 1 -0.1306 -4.3212 4.6847 42 1 -1.8510 -3.9812 2.9560 43 1 -1.2118 -3.1409 0.7316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357157055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:58 Heat of formation + Delta-G solvation = -86.925278 kcal Electronic energy + Delta-G solvation = -22603.467683 eV Core-core repulsion = 19226.542360 eV Total energy + Delta-G solvation = -3376.925324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.19900 -38.31971 -37.50717 -35.50801 -34.18579 -32.78965 -31.29888 -30.10698 -29.22988 -27.76488 -25.02913 -23.31877 -22.50785 -21.65749 -21.48865 -20.20501 -19.40030 -17.61680 -16.88830 -16.31186 -16.21410 -15.86069 -15.48572 -14.99163 -14.48997 -14.12984 -14.08033 -13.79902 -13.63357 -13.01544 -12.85568 -12.51670 -12.40744 -12.09026 -12.07738 -11.98404 -11.79559 -11.45399 -11.15643 -11.06859 -10.83281 -10.68577 -10.42167 -10.28949 -10.13314 -10.02788 -9.64345 -9.01515 -8.65025 -8.55832 -8.24057 -8.13565 -7.62437 -6.21426 -3.88868 2.19510 2.25406 3.48396 3.51822 3.54283 3.58271 3.71359 4.04076 4.61956 4.64705 4.68134 4.71051 4.99803 5.06630 5.18631 5.31592 5.46897 5.53906 5.59976 5.63747 5.67469 5.69405 5.76771 5.92057 6.00697 6.04426 6.11683 6.13332 6.19271 6.32094 6.43029 6.70129 6.79774 6.89246 6.93981 7.21232 7.23116 7.28462 7.39123 7.73251 7.86489 8.04913 8.24689 8.52940 8.99145 9.04541 9.80460 11.19084 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.003572 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.645091 B = 7837.852455 C = 9126.645093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 1.066 2.934 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.568 4.568 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.051 0.949 11 C -0.117 4.117 12 C 0.512 3.488 13 O -0.499 6.499 14 N -0.751 5.751 15 C 0.122 3.878 16 C -0.126 4.126 17 C -0.119 4.119 18 C 0.076 3.924 19 O -0.576 6.576 20 C -0.031 4.031 21 C -0.108 4.108 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.130 4.130 26 H 0.270 0.730 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.392 0.608 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.379 0.621 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -14.020 -6.564 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.174 4.174 3 Si 0.896 3.104 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.605 4.605 8 H 0.063 0.937 9 C 0.053 3.947 10 H 0.069 0.931 11 C -0.157 4.157 12 C 0.298 3.702 13 O -0.371 6.371 14 N -0.407 5.407 15 C -0.002 4.002 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.002 4.002 19 O -0.381 6.381 20 C -0.031 4.031 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.142 4.142 25 C -0.148 4.148 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.225 0.775 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.887 -11.055 -6.617 15.106 hybrid contribution 0.814 -2.496 0.062 2.626 sum 8.701 -13.551 -6.555 17.386 Atomic orbital electron populations 1.70723 1.06881 1.31170 1.45409 1.25581 0.96435 1.02228 0.93112 0.83593 0.74916 0.75677 0.76242 1.21843 1.21669 1.21092 1.21552 0.93824 0.90612 1.54541 0.93660 1.17867 0.96156 0.92970 0.87731 0.93103 1.21685 1.02048 0.99778 0.92229 1.20869 0.77779 0.83815 0.87698 1.90749 1.48665 1.22436 1.75212 1.46173 1.54660 1.26804 1.13031 1.21155 0.98926 0.97440 0.82670 1.21676 1.00277 0.99336 0.95128 1.21424 1.00403 0.99370 0.94523 1.22196 0.98261 0.97026 0.82668 1.86494 1.73394 1.52757 1.25488 1.20836 0.92310 0.90947 0.99046 1.20915 0.99696 0.99209 0.92823 1.21011 0.95810 1.01084 0.96864 1.20824 0.93552 1.04119 0.98655 1.20964 0.98353 1.00850 0.94075 1.21068 0.96453 1.00608 0.96706 0.91842 0.90315 0.91715 0.77502 0.91953 0.91765 0.91220 0.91283 0.90825 0.90768 0.93625 0.93669 0.77479 0.86745 0.87458 0.87593 0.87466 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.63 55.43 0.76 -27.17 16 2 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 3 Si 1.07 26.68 29.91 -169.99 -5.08 21.59 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.57 -15.59 6.40 -34.44 -0.22 -15.81 16 8 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 9 C 0.07 1.73 1.31 -92.92 -0.12 1.61 16 10 H 0.05 1.38 6.24 -51.93 -0.32 1.06 16 11 C -0.12 -2.28 4.94 -27.88 -0.14 -2.41 16 12 C 0.51 10.29 7.58 -10.98 -0.08 10.21 16 13 O -0.50 -12.69 15.02 5.55 0.08 -12.60 16 14 N -0.75 -11.04 5.56 -60.29 -0.33 -11.38 16 15 C 0.12 1.63 5.67 -4.04 -0.02 1.61 16 16 C -0.13 -1.15 5.33 -26.73 -0.14 -1.29 16 17 C -0.12 -1.11 5.58 -26.73 -0.15 -1.26 16 18 C 0.08 0.59 7.05 37.15 0.26 0.86 16 19 O -0.58 -5.11 13.66 -35.23 -0.48 -5.59 16 20 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 21 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 22 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 23 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.12 -2.29 10.05 -39.59 -0.40 -2.69 16 25 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 26 H 0.27 8.23 6.68 -40.82 -0.27 7.95 16 27 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.39 4.39 8.47 -40.82 -0.35 4.04 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.38 1.52 9.12 45.56 0.42 1.93 16 39 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -35.40 361.27 -8.80 -44.20 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.04 Total: 6.52 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.14 Total: -21.02 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.42 Total: -38.55 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.40 Total: -18.19 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -5.08 Total: 21.59 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.40 -8.80 -44.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357157055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.724 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds