Wall clock time and date at job start Tue Mar 31 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00254 * 2 1 4 4 H 1.48498 * 109.47129 * 90.00333 * 3 2 1 5 5 H 1.48498 * 109.47291 * 210.00452 * 3 2 1 6 6 H 1.48503 * 109.46813 * 330.00441 * 3 2 1 7 7 C 1.37873 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00506 * 186.56689 * 7 2 1 9 9 C 1.50705 * 120.00025 * 6.55948 * 7 2 1 10 10 H 1.08998 * 109.46932 * 30.08568 * 9 7 2 11 11 C 1.52994 * 109.47281 * 150.08844 * 9 7 2 12 12 C 1.50706 * 109.46995 * 294.05789 * 11 9 7 13 13 O 1.21284 * 119.99931 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99980 * 179.97438 * 12 11 9 15 15 C 1.46503 * 119.99939 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47206 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47005 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47025 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47077 * 270.08853 * 9 7 2 21 21 C 1.38232 * 120.00156 * 304.29849 * 20 9 7 22 22 C 1.38227 * 120.00423 * 179.81276 * 21 20 9 23 23 C 1.38243 * 119.99751 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85625 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 0.96995 * 120.00371 * 174.72721 * 1 2 3 27 27 H 1.08999 * 109.47445 * 54.05320 * 11 9 7 28 28 H 1.09002 * 109.47203 * 174.06119 * 11 9 7 29 29 H 0.97001 * 120.00043 * 0.02562 * 14 12 11 30 30 H 1.08997 * 109.47631 * 300.00653 * 15 14 12 31 31 H 1.09002 * 109.46627 * 60.00525 * 15 14 12 32 32 H 1.08999 * 109.46886 * 300.00255 * 16 15 14 33 33 H 1.09001 * 109.46961 * 59.99804 * 16 15 14 34 34 H 1.08999 * 109.46538 * 299.99960 * 17 16 15 35 35 H 1.09002 * 109.46969 * 60.00060 * 17 16 15 36 36 H 1.08997 * 109.47735 * 299.99863 * 18 17 16 37 37 H 1.09002 * 109.47203 * 60.00209 * 18 17 16 38 38 H 0.96703 * 114.00316 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.99790 * 359.97438 * 21 20 9 40 40 H 1.08004 * 120.00499 * 180.23296 * 22 21 20 41 41 H 1.08002 * 119.99679 * 179.83680 * 23 22 21 42 42 H 1.08002 * 119.99754 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1064 9 6 1.2584 -2.4948 -0.1502 10 1 0.3619 -2.3327 -0.7487 11 6 2.1563 -3.5208 -0.8443 12 6 2.4283 -3.0755 -2.2581 13 8 1.9512 -2.0392 -2.6698 14 7 3.2024 -3.8282 -3.0646 15 6 3.4663 -3.3955 -4.4392 16 6 4.3643 -4.4215 -5.1333 17 6 4.6405 -3.9693 -6.5687 18 6 5.5390 -4.9950 -7.2625 19 8 5.7964 -4.5729 -8.6033 20 6 0.8673 -3.0091 1.2113 21 6 1.8337 -3.2050 2.1800 22 6 1.4745 -3.6730 3.4301 23 6 0.1497 -3.9530 3.7088 24 6 -0.8160 -3.7621 2.7384 25 6 -0.4572 -3.2904 1.4896 26 1 -0.4850 -0.8364 -0.0772 27 1 3.0983 -3.6049 -0.3024 28 1 1.6574 -4.4899 -0.8583 29 1 3.5842 -4.6569 -2.7352 30 1 2.5243 -3.3121 -4.9811 31 1 3.9646 -2.4262 -4.4256 32 1 5.3064 -4.5052 -4.5915 33 1 3.8656 -5.3907 -5.1469 34 1 3.6985 -3.8853 -7.1106 35 1 5.1393 -3.0003 -6.5547 36 1 6.4809 -5.0786 -6.7204 37 1 5.0405 -5.9642 -7.2765 38 1 6.3616 -5.1769 -9.1041 39 1 2.8692 -2.9898 1.9610 40 1 2.2291 -3.8225 4.1882 41 1 -0.1306 -4.3212 4.6847 42 1 -1.8510 -3.9812 2.9560 43 1 -1.2118 -3.1409 0.7316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357157055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:58 Heat of formation + Delta-G solvation = -112.454032 kcal Electronic energy + Delta-G solvation = -22604.574693 eV Core-core repulsion = 19226.542360 eV Total energy + Delta-G solvation = -3378.032333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78903 -39.82798 -38.21890 -36.69636 -35.95619 -33.96213 -33.21230 -31.60609 -30.66441 -28.89740 -26.84133 -24.86935 -23.71792 -23.16884 -22.35923 -21.75818 -20.98796 -18.82721 -18.27865 -17.84735 -17.22872 -17.10935 -16.88142 -16.37087 -15.83946 -15.66784 -15.62072 -15.07797 -14.98089 -14.51330 -14.42037 -14.04808 -13.97361 -13.47200 -13.32059 -13.12600 -12.92512 -12.83107 -12.65945 -12.59387 -12.07095 -11.96785 -11.89303 -11.82234 -11.71289 -11.48236 -10.86740 -10.75434 -10.62967 -10.31455 -9.98505 -9.63911 -9.26924 -8.45386 -6.11046 0.68063 0.74220 1.46509 1.58806 1.71980 1.89190 2.31622 2.60391 3.10768 3.35432 3.39438 3.89354 3.92355 4.13277 4.13979 4.28642 4.30076 4.30606 4.35267 4.44334 4.45210 4.50028 4.63264 4.63711 4.76296 4.81191 4.83476 4.87037 4.95349 5.12116 5.23132 5.24061 5.29192 5.41344 5.43038 5.59173 5.74868 5.82824 5.94599 6.24333 6.30969 6.39636 6.73549 6.78916 6.91654 7.53166 7.64824 8.95088 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.003572 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.645091 B = 7837.852455 C = 9126.645093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.026 4.026 3 Si 1.102 2.898 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.292 1.292 7 C -0.558 4.558 8 H 0.039 0.961 9 C 0.073 3.927 10 H 0.006 0.994 11 C -0.111 4.111 12 C 0.508 3.492 13 O -0.564 6.564 14 N -0.726 5.726 15 C 0.119 3.881 16 C -0.109 4.109 17 C -0.121 4.121 18 C 0.077 3.923 19 O -0.601 6.601 20 C -0.056 4.056 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.154 4.154 26 H 0.258 0.742 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.414 0.586 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 -16.581 -4.948 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.224 4.224 3 Si 0.927 3.073 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.218 1.218 7 C -0.596 4.596 8 H 0.058 0.942 9 C 0.054 3.946 10 H 0.024 0.976 11 C -0.151 4.151 12 C 0.295 3.705 13 O -0.441 6.441 14 N -0.381 5.381 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.160 4.160 18 C 0.000 4.000 19 O -0.410 6.410 20 C -0.056 4.056 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.172 4.172 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.251 0.749 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.851 -13.701 -5.006 17.601 hybrid contribution 0.240 -1.840 -0.452 1.910 sum 10.091 -15.541 -5.458 19.317 Atomic orbital electron populations 1.70814 1.07837 1.30465 1.49018 1.26742 0.96629 1.05640 0.93396 0.83132 0.74226 0.72755 0.77228 1.19782 1.20564 1.21817 1.21828 0.93552 0.92125 1.52063 0.94236 1.17698 0.94740 0.93228 0.88959 0.97598 1.21586 1.02222 0.99635 0.91679 1.21061 0.77710 0.83322 0.88378 1.90730 1.51530 1.25421 1.76440 1.45896 1.52574 1.26642 1.13003 1.21261 0.99045 0.98241 0.81911 1.21546 1.00127 0.98474 0.94491 1.21416 1.00223 0.99543 0.94783 1.22195 0.98698 0.96770 0.82335 1.86437 1.74199 1.54193 1.26214 1.20622 0.93442 0.93283 0.98269 1.21008 0.99274 1.00113 0.93694 1.21414 0.97171 0.99234 0.96361 1.21313 0.92889 1.02200 0.99840 1.21296 1.00315 0.99690 0.92993 1.21123 0.95841 1.02200 0.98031 0.93161 0.88405 0.88830 0.74895 0.93501 0.93837 0.89400 0.89174 0.92057 0.92222 0.92093 0.91991 0.75167 0.86715 0.83868 0.83535 0.84755 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.03 13.63 21.45 0.29 -60.73 16 2 C -0.03 -1.56 5.45 84.65 0.46 -1.09 16 3 Si 1.10 55.10 29.91 68.60 2.05 57.15 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 7 C -0.56 -31.56 6.40 25.60 0.16 -31.40 16 8 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 9 C 0.07 3.65 1.31 -12.29 -0.02 3.63 16 10 H 0.01 0.34 6.24 -2.39 -0.01 0.32 16 11 C -0.11 -4.33 4.94 29.85 0.15 -4.18 16 12 C 0.51 20.81 7.58 87.66 0.66 21.47 16 13 O -0.56 -30.23 15.02 -3.04 -0.05 -30.28 16 14 N -0.73 -20.74 5.56 -463.05 -2.57 -23.32 16 15 C 0.12 3.19 5.67 86.38 0.49 3.68 16 16 C -0.11 -1.76 5.33 30.59 0.16 -1.59 16 17 C -0.12 -2.14 5.58 30.59 0.17 -1.97 16 18 C 0.08 1.03 7.05 71.98 0.51 1.54 16 19 O -0.60 -9.75 13.66 -148.98 -2.03 -11.79 16 20 C -0.06 -2.50 4.77 -19.87 -0.09 -2.60 16 21 C -0.12 -4.85 8.88 22.27 0.20 -4.65 16 22 C -0.12 -4.03 10.05 22.27 0.22 -3.81 16 23 C -0.14 -4.46 10.05 22.27 0.22 -4.24 16 24 C -0.13 -4.36 10.05 22.27 0.22 -4.13 16 25 C -0.15 -6.57 9.67 22.27 0.22 -6.35 16 26 H 0.26 16.80 6.68 -92.71 -0.62 16.18 16 27 H 0.10 3.41 7.87 -2.39 -0.02 3.39 16 28 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.41 8.21 8.47 -92.71 -0.79 7.43 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.40 2.47 9.12 -74.06 -0.68 1.79 16 39 H 0.11 4.41 7.80 -2.91 -0.02 4.39 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -82.13 361.27 1.13 -81.01 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.31 Total: 23.66 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 3.74 Total: -35.69 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.28 Total: -84.05 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.08 Total: -42.07 kcal Atomic # 14 Polarization: 55.10 SS G_CDS: 2.05 Total: 57.15 kcal Total: -82.13 1.13 -81.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357157055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.449 kcal (2) G-P(sol) polarization free energy of solvation -82.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds