Wall clock time and date at job start Tue Mar 31 2020 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 102.99901 * 2 1 4 4 C 1.39000 * 120.08264 * 359.97438 * 3 2 1 5 5 C 1.38061 * 119.92436 * 180.02562 * 4 3 2 6 6 C 1.38329 * 120.07375 * 359.72708 * 5 4 3 7 7 C 1.38279 * 120.16242 * 0.55208 * 6 5 4 8 8 C 1.38098 * 120.08193 * 359.44225 * 7 6 5 9 9 C 1.50698 * 120.04297 * 180.25165 * 8 7 6 10 10 N 1.46500 * 109.47491 * 260.00826 * 9 8 7 11 11 C 1.36932 * 120.00291 * 85.18683 * 10 9 8 12 12 H 1.07992 * 120.00453 * 217.99860 * 11 10 9 13 13 C 1.38819 * 119.99871 * 37.99741 * 11 10 9 14 14 N 1.31615 * 120.00305 * 216.43348 * 13 11 10 15 15 Si 1.86802 * 119.99761 * 36.43509 * 13 11 10 16 16 H 1.48503 * 109.47185 * 95.43311 * 15 13 11 17 17 H 1.48504 * 109.47084 * 215.43194 * 15 13 11 18 18 H 1.48499 * 109.47232 * 335.42946 * 15 13 11 19 19 C 1.46497 * 119.99492 * 265.19016 * 10 9 8 20 20 C 1.54269 * 110.03332 * 237.37120 * 19 10 9 21 21 C 1.54957 * 104.16467 * 217.13994 * 20 19 10 22 22 C 1.54889 * 102.77698 * 37.88958 * 21 20 19 23 23 C 1.53875 * 110.03385 * 120.16086 * 19 10 9 24 24 H 1.09009 * 109.46949 * 60.00049 * 1 2 3 25 25 H 1.08995 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47494 * 299.99949 * 1 2 3 27 27 H 1.08001 * 120.03625 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96268 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.91185 * 180.27348 * 6 5 4 30 30 H 1.08007 * 119.95549 * 179.72488 * 7 6 5 31 31 H 1.09004 * 109.46849 * 20.01046 * 9 8 7 32 32 H 1.09003 * 109.47091 * 140.00024 * 9 8 7 33 33 H 0.96992 * 119.99989 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.02416 * 358.76470 * 19 10 9 35 35 H 1.09000 * 110.48438 * 335.79271 * 20 19 10 36 36 H 1.09005 * 110.48592 * 98.42567 * 20 19 10 37 37 H 1.09002 * 110.72083 * 279.57173 * 21 20 19 38 38 H 1.09006 * 110.92607 * 156.29666 * 21 20 19 39 39 H 1.09002 * 110.48643 * 203.40727 * 22 21 20 40 40 H 1.08995 * 110.59949 * 80.81910 * 22 21 20 41 41 H 1.09000 * 110.03160 * 238.57037 * 23 19 10 42 42 H 1.09005 * 110.02861 * 359.94569 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8328 4.4131 0.0046 7 6 3.8454 3.4715 -0.0006 8 6 3.5386 2.1250 0.0000 9 6 4.6429 1.0996 0.0000 10 7 4.8372 0.5911 -1.3601 11 6 5.6472 1.2657 -2.2341 12 1 5.3764 1.3355 -3.2772 13 6 6.8164 1.8599 -1.7793 14 7 7.2114 3.0083 -2.2866 15 14 7.8292 1.0294 -0.4474 16 1 8.9106 0.2282 -1.0750 17 1 8.4275 2.0624 0.4360 18 1 6.9547 0.1376 0.3557 19 6 4.1649 -0.6392 -1.7851 20 6 5.2060 -1.6721 -2.2637 21 6 4.5180 -2.3776 -3.4596 22 6 3.7618 -1.2173 -4.1531 23 6 3.2467 -0.3504 -2.9856 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.1616 2.3526 -0.0014 28 1 0.7211 4.7488 -0.0019 29 1 3.0756 5.4655 0.0087 30 1 4.8776 3.7895 -0.0007 31 1 5.5663 1.5601 0.3511 32 1 4.3737 0.2757 0.6610 33 1 8.0282 3.4236 -1.9685 34 1 3.5828 -1.0504 -0.9603 35 1 6.1179 -1.1717 -2.5894 36 1 5.4248 -2.3883 -1.4717 37 1 3.8205 -3.1385 -3.1092 38 1 5.2570 -2.8136 -4.1320 39 1 2.9275 -1.6022 -4.7394 40 1 4.4383 -0.6425 -4.7855 41 1 2.2192 -0.6221 -2.7437 42 1 3.3007 0.7054 -3.2514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358049061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:06 Heat of formation + Delta-G solvation = 43.071247 kcal Electronic energy + Delta-G solvation = -22256.627017 eV Core-core repulsion = 19328.091637 eV Total energy + Delta-G solvation = -2928.535380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.76809 -37.58813 -34.47985 -31.84526 -30.81460 -30.43291 -28.58797 -27.81825 -26.96872 -25.55788 -22.67445 -22.11525 -20.77193 -19.88784 -18.93960 -17.20909 -16.39726 -15.63503 -15.18963 -15.11744 -14.55723 -14.29553 -14.05120 -13.78054 -13.69317 -13.30312 -12.93422 -12.63793 -12.44062 -12.25769 -12.11789 -12.08135 -11.38916 -11.19238 -10.82115 -10.71560 -10.52344 -10.37750 -10.31611 -10.26564 -10.08417 -9.96844 -9.85617 -9.51631 -9.26275 -9.11899 -8.35519 -8.20065 -6.87871 -6.70230 -6.08134 -3.29480 1.77270 1.90172 1.96159 2.81616 3.37896 3.51495 3.57676 4.23598 4.58023 5.06547 5.17308 5.19336 5.27181 5.31234 5.38101 5.48774 5.50511 5.62917 5.73979 5.74575 5.91160 6.02654 6.17657 6.22673 6.31819 6.34547 6.36947 6.48798 6.58096 6.59213 6.62643 6.65996 6.70852 6.80092 6.87933 7.02300 7.08534 7.26764 7.28104 7.30275 7.50764 8.04608 8.48651 9.05769 9.76729 10.22793 11.07317 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.009177 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.608909 B = 3050.469762 C = 4468.661371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S -0.098 6.098 3 C -0.081 4.081 4 C -0.141 4.141 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.055 4.055 9 C 0.179 3.821 10 N -0.582 5.582 11 C -0.264 4.264 12 H 0.076 0.924 13 C 0.052 3.948 14 N -0.871 5.871 15 Si 0.832 3.168 16 H -0.290 1.290 17 H -0.296 1.296 18 H -0.262 1.262 19 C 0.175 3.825 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -4.398 4.173 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.145 5.855 3 C -0.194 4.194 4 C -0.165 4.165 5 C -0.141 4.141 6 C -0.147 4.147 7 C -0.098 4.098 8 C -0.063 4.063 9 C 0.052 3.948 10 N -0.301 5.301 11 C -0.392 4.392 12 H 0.093 0.907 13 C -0.150 4.150 14 N -0.509 5.509 15 Si 0.658 3.342 16 H -0.218 1.218 17 H -0.222 1.222 18 H -0.186 1.186 19 C 0.068 3.932 20 C -0.177 4.177 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.166 4.166 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.938 -5.334 4.157 12.860 hybrid contribution -0.121 0.910 0.571 1.081 sum -11.060 -4.424 4.728 12.815 Atomic orbital electron populations 1.23733 0.98463 1.06039 1.04821 1.85730 1.02950 1.04309 1.92545 1.21476 0.96202 0.95665 1.06099 1.20933 0.97347 0.93342 1.04897 1.20804 0.96299 0.94920 1.02106 1.21107 0.92841 0.99239 1.01468 1.21073 0.99582 0.91992 0.97174 1.20683 0.93318 0.96052 0.96256 1.20263 0.93605 0.92884 0.88021 1.44165 1.52465 1.23171 1.10324 1.18462 0.99375 1.28512 0.92822 0.90694 1.25431 0.97266 0.95839 0.96469 1.70134 1.23414 1.13079 1.44289 0.87515 0.81985 0.81355 0.83309 1.21789 1.22241 1.18623 1.21256 0.91336 0.85859 0.94733 1.22854 1.01038 0.97506 0.96254 1.22400 0.98616 0.97109 0.97711 1.22275 0.98721 0.96812 0.97884 1.22535 0.98191 1.00427 0.95411 0.90335 0.88285 0.90678 0.86986 0.86900 0.86664 0.85512 0.92359 0.93010 0.92860 0.91666 0.89882 0.93620 0.92775 0.92856 0.93505 0.91991 0.93037 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.15 101.05 0.92 -0.92 16 2 S -0.10 -1.53 16.47 -107.50 -1.77 -3.31 16 3 C -0.08 -1.46 6.11 -39.03 -0.24 -1.70 16 4 C -0.14 -2.27 9.36 -39.36 -0.37 -2.63 16 5 C -0.12 -1.89 10.04 -39.61 -0.40 -2.29 16 6 C -0.13 -2.16 10.04 -39.53 -0.40 -2.56 16 7 C -0.08 -1.55 9.66 -39.62 -0.38 -1.93 16 8 C -0.05 -1.11 5.45 -104.41 -0.57 -1.68 16 9 C 0.18 3.89 4.08 -5.19 -0.02 3.87 16 10 N -0.58 -13.23 1.97 -165.75 -0.33 -13.56 16 11 C -0.26 -6.92 7.86 -15.06 -0.12 -7.04 16 12 H 0.08 2.17 7.39 -52.49 -0.39 1.78 16 13 C 0.05 1.42 5.02 -17.43 -0.09 1.34 16 14 N -0.87 -25.09 13.97 55.49 0.78 -24.32 16 15 Si 0.83 20.74 26.34 -169.99 -4.48 16.26 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 17 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 18 H -0.26 -6.31 6.19 56.52 0.35 -5.96 16 19 C 0.18 3.47 2.53 -66.81 -0.17 3.30 16 20 C -0.14 -2.63 6.41 -25.03 -0.16 -2.79 16 21 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 22 C -0.12 -2.02 6.83 -25.07 -0.17 -2.20 16 23 C -0.13 -2.37 5.78 -25.61 -0.15 -2.52 16 24 H 0.08 0.87 7.75 -51.92 -0.40 0.47 16 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.11 1.51 5.88 -52.49 -0.31 1.20 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.13 2.70 8.04 -52.48 -0.42 2.28 16 31 H 0.06 1.36 4.37 -51.93 -0.23 1.13 16 32 H 0.05 1.07 6.94 -51.93 -0.36 0.71 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.24 4.99 -42.71 -0.21 1.03 16 35 H 0.08 1.82 7.01 -51.93 -0.36 1.46 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.89 7.57 -51.93 -0.39 0.49 16 42 H 0.07 1.53 7.04 -51.93 -0.37 1.17 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -28.25 332.42 -9.68 -37.93 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.42 Total: 3.86 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.48 Total: -21.87 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.45 Total: -37.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.48 Total: 16.26 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -1.77 Total: -3.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.25 -9.68 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358049061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.999 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds