Wall clock time and date at job start Tue Mar 31 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 102.99901 * 2 1 4 4 C 1.39000 * 120.08264 * 359.97438 * 3 2 1 5 5 C 1.38061 * 119.92436 * 180.02562 * 4 3 2 6 6 C 1.38329 * 120.07375 * 359.72708 * 5 4 3 7 7 C 1.38279 * 120.16242 * 0.55208 * 6 5 4 8 8 C 1.38098 * 120.08193 * 359.44225 * 7 6 5 9 9 C 1.50698 * 120.04297 * 180.25165 * 8 7 6 10 10 N 1.46500 * 109.47491 * 260.00826 * 9 8 7 11 11 C 1.36932 * 120.00291 * 85.18683 * 10 9 8 12 12 H 1.07992 * 120.00453 * 217.99860 * 11 10 9 13 13 C 1.38819 * 119.99871 * 37.99741 * 11 10 9 14 14 N 1.31615 * 120.00305 * 216.43348 * 13 11 10 15 15 Si 1.86802 * 119.99761 * 36.43509 * 13 11 10 16 16 H 1.48503 * 109.47185 * 95.43311 * 15 13 11 17 17 H 1.48504 * 109.47084 * 215.43194 * 15 13 11 18 18 H 1.48499 * 109.47232 * 335.42946 * 15 13 11 19 19 C 1.46497 * 119.99492 * 265.19016 * 10 9 8 20 20 C 1.54269 * 110.03332 * 237.37120 * 19 10 9 21 21 C 1.54957 * 104.16467 * 217.13994 * 20 19 10 22 22 C 1.54889 * 102.77698 * 37.88958 * 21 20 19 23 23 C 1.53875 * 110.03385 * 120.16086 * 19 10 9 24 24 H 1.09009 * 109.46949 * 60.00049 * 1 2 3 25 25 H 1.08995 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47494 * 299.99949 * 1 2 3 27 27 H 1.08001 * 120.03625 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96268 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.91185 * 180.27348 * 6 5 4 30 30 H 1.08007 * 119.95549 * 179.72488 * 7 6 5 31 31 H 1.09004 * 109.46849 * 20.01046 * 9 8 7 32 32 H 1.09003 * 109.47091 * 140.00024 * 9 8 7 33 33 H 0.96992 * 119.99989 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.02416 * 358.76470 * 19 10 9 35 35 H 1.09000 * 110.48438 * 335.79271 * 20 19 10 36 36 H 1.09005 * 110.48592 * 98.42567 * 20 19 10 37 37 H 1.09002 * 110.72083 * 279.57173 * 21 20 19 38 38 H 1.09006 * 110.92607 * 156.29666 * 21 20 19 39 39 H 1.09002 * 110.48643 * 203.40727 * 22 21 20 40 40 H 1.08995 * 110.59949 * 80.81910 * 22 21 20 41 41 H 1.09000 * 110.03160 * 238.57037 * 23 19 10 42 42 H 1.09005 * 110.02861 * 359.94569 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8328 4.4131 0.0046 7 6 3.8454 3.4715 -0.0006 8 6 3.5386 2.1250 0.0000 9 6 4.6429 1.0996 0.0000 10 7 4.8372 0.5911 -1.3601 11 6 5.6472 1.2657 -2.2341 12 1 5.3764 1.3355 -3.2772 13 6 6.8164 1.8599 -1.7793 14 7 7.2114 3.0083 -2.2866 15 14 7.8292 1.0294 -0.4474 16 1 8.9106 0.2282 -1.0750 17 1 8.4275 2.0624 0.4360 18 1 6.9547 0.1376 0.3557 19 6 4.1649 -0.6392 -1.7851 20 6 5.2060 -1.6721 -2.2637 21 6 4.5180 -2.3776 -3.4596 22 6 3.7618 -1.2173 -4.1531 23 6 3.2467 -0.3504 -2.9856 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.1616 2.3526 -0.0014 28 1 0.7211 4.7488 -0.0019 29 1 3.0756 5.4655 0.0087 30 1 4.8776 3.7895 -0.0007 31 1 5.5663 1.5601 0.3511 32 1 4.3737 0.2757 0.6610 33 1 8.0282 3.4236 -1.9685 34 1 3.5828 -1.0504 -0.9603 35 1 6.1179 -1.1717 -2.5894 36 1 5.4248 -2.3883 -1.4717 37 1 3.8205 -3.1385 -3.1092 38 1 5.2570 -2.8136 -4.1320 39 1 2.9275 -1.6022 -4.7394 40 1 4.4383 -0.6425 -4.7855 41 1 2.2192 -0.6221 -2.7437 42 1 3.3007 0.7054 -3.2514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358049061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:03 Heat of formation + Delta-G solvation = 29.507766 kcal Electronic energy + Delta-G solvation = -22257.215174 eV Core-core repulsion = 19328.091637 eV Total energy + Delta-G solvation = -2929.123537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22688 -39.10394 -36.14281 -33.79245 -32.16899 -31.94897 -29.55199 -29.30686 -28.54093 -27.34426 -24.36681 -23.54139 -22.25876 -21.29604 -20.65336 -18.71746 -18.03283 -17.21884 -16.82575 -16.63436 -16.18921 -15.78723 -15.44122 -15.15506 -14.82958 -14.70495 -14.42968 -14.25469 -14.04660 -13.89739 -13.54744 -13.26613 -12.93971 -12.72009 -12.68017 -12.30757 -12.20909 -11.89185 -11.86892 -11.73896 -11.70505 -11.51026 -11.36432 -11.28061 -10.63110 -10.48224 -10.38615 -9.63416 -8.60627 -8.22172 -8.10531 -5.38275 0.40564 0.55027 0.75861 1.32511 1.42913 1.51385 1.69616 2.48202 2.79253 3.07956 3.57857 3.98423 4.01628 4.05166 4.12241 4.20681 4.32281 4.36784 4.39246 4.44928 4.60835 4.71136 4.80362 4.83440 4.84972 4.93952 4.99228 5.00530 5.04419 5.06532 5.19075 5.23867 5.25682 5.36505 5.42741 5.60446 5.63125 5.70999 5.72630 5.81456 6.00857 6.13095 6.34046 7.09801 7.76522 8.23145 8.98528 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.009177 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.608909 B = 3050.469762 C = 4468.661371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.128 6.128 3 C -0.087 4.087 4 C -0.140 4.140 5 C -0.111 4.111 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.083 4.083 9 C 0.181 3.819 10 N -0.588 5.588 11 C -0.236 4.236 12 H 0.037 0.963 13 C 0.008 3.992 14 N -0.917 5.917 15 Si 0.887 3.113 16 H -0.298 1.298 17 H -0.301 1.301 18 H -0.249 1.249 19 C 0.169 3.831 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -6.187 5.004 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.114 5.886 3 C -0.200 4.200 4 C -0.163 4.163 5 C -0.130 4.130 6 C -0.153 4.153 7 C -0.127 4.127 8 C -0.091 4.091 9 C 0.055 3.945 10 N -0.309 5.309 11 C -0.366 4.366 12 H 0.054 0.946 13 C -0.191 4.191 14 N -0.559 5.559 15 Si 0.714 3.286 16 H -0.226 1.226 17 H -0.228 1.228 18 H -0.173 1.173 19 C 0.063 3.937 20 C -0.181 4.181 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.155 4.155 24 H 0.104 0.896 25 H 0.141 0.859 26 H 0.109 0.891 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.619 -7.157 5.011 17.030 hybrid contribution 0.805 1.477 0.315 1.711 sum -13.814 -5.680 5.326 15.857 Atomic orbital electron populations 1.23826 0.93836 1.08042 1.05934 1.85653 1.07812 1.02800 1.92314 1.21655 0.95532 0.97563 1.05279 1.21381 0.98489 0.93148 1.03314 1.21265 0.96302 0.95861 0.99616 1.21342 0.93165 0.99663 1.01141 1.21018 0.99091 0.93101 0.99467 1.20497 0.94210 0.95546 0.98823 1.20139 0.93415 0.93603 0.87309 1.44216 1.52267 1.24327 1.10060 1.18170 0.99304 1.27323 0.91793 0.94565 1.25781 0.98328 0.96253 0.98725 1.70209 1.24153 1.14606 1.46922 0.86624 0.80481 0.80212 0.81253 1.22617 1.22846 1.17286 1.21477 0.91648 0.84833 0.95719 1.22845 0.99520 0.97694 0.98058 1.22365 0.98987 0.96983 0.96307 1.22262 0.99349 0.96662 0.97268 1.22393 0.99203 0.98241 0.95667 0.89574 0.85864 0.89117 0.83583 0.82940 0.84810 0.88592 0.94829 0.91918 0.93136 0.90058 0.93545 0.92315 0.89823 0.91787 0.90487 0.94476 0.90919 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.15 113.37 1.04 -1.60 16 2 S -0.13 -3.67 16.47 -56.49 -0.93 -4.60 16 3 C -0.09 -3.00 6.11 22.63 0.14 -2.87 16 4 C -0.14 -4.01 9.36 22.41 0.21 -3.80 16 5 C -0.11 -3.12 10.04 22.25 0.22 -2.89 16 6 C -0.13 -4.46 10.04 22.30 0.22 -4.24 16 7 C -0.11 -4.42 9.66 22.25 0.21 -4.21 16 8 C -0.08 -3.43 5.45 -19.73 -0.11 -3.53 16 9 C 0.18 8.09 4.08 85.63 0.35 8.44 16 10 N -0.59 -27.51 1.97 -678.32 -1.34 -28.84 16 11 C -0.24 -13.09 7.86 84.04 0.66 -12.43 16 12 H 0.04 2.27 7.39 -2.91 -0.02 2.25 16 13 C 0.01 0.44 5.02 84.86 0.43 0.87 16 14 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 15 Si 0.89 45.18 26.34 68.60 1.81 46.98 16 16 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 17 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 18 H -0.25 -12.00 6.19 99.48 0.62 -11.38 16 19 C 0.17 6.63 2.53 45.72 0.12 6.74 16 20 C -0.14 -5.33 6.41 31.69 0.20 -5.12 16 21 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 22 C -0.12 -3.84 6.83 31.67 0.22 -3.62 16 23 C -0.12 -4.26 5.78 31.32 0.18 -4.08 16 24 H 0.09 1.46 7.75 -2.39 -0.02 1.44 16 25 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.39 7.75 -2.39 -0.02 1.37 16 27 H 0.15 3.16 5.88 -2.91 -0.02 3.15 16 28 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.10 4.47 8.04 -2.91 -0.02 4.44 16 31 H 0.03 1.63 4.37 -2.39 -0.01 1.62 16 32 H 0.06 2.59 6.94 -2.39 -0.02 2.58 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.08 2.95 4.99 -8.25 -0.04 2.91 16 35 H 0.05 2.08 7.01 -2.39 -0.02 2.06 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 42 H 0.03 1.30 7.04 -2.38 -0.02 1.28 16 Total: -1.00 -65.90 332.42 5.03 -60.87 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.88 Total: 16.81 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.31 Total: -35.39 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.03 Total: -84.68 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.81 Total: 46.98 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -0.93 Total: -4.60 kcal Total: -65.90 5.03 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358049061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.380 kcal (2) G-P(sol) polarization free energy of solvation -65.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds