Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99990 * 2 1 4 4 C 1.53001 * 109.47025 * 95.00882 * 3 2 1 5 5 C 1.50698 * 119.99704 * 180.02562 * 2 1 3 6 6 N 1.46506 * 109.47097 * 94.99574 * 5 2 1 7 7 C 1.40006 * 119.99866 * 179.97438 * 6 5 2 8 8 C 1.38642 * 120.09971 * 0.02562 * 7 6 5 9 9 C 1.38282 * 120.00478 * 180.27692 * 8 7 6 10 10 C 1.38271 * 120.20323 * 359.48548 * 9 8 7 11 11 C 1.38244 * 120.19587 * 0.51154 * 10 9 8 12 12 C 1.38726 * 119.99625 * 359.74590 * 11 10 9 13 13 S 1.76200 * 120.10393 * 179.97438 * 12 11 10 14 14 C 1.81395 * 103.00032 * 353.33354 * 13 12 11 15 15 H 1.09002 * 109.47126 * 48.28080 * 14 13 12 16 16 C 1.53004 * 109.47262 * 288.28497 * 14 13 12 17 17 C 1.50696 * 109.47213 * 168.28139 * 14 13 12 18 18 H 1.07999 * 120.00373 * 2.68945 * 17 14 13 19 19 C 1.37881 * 120.00189 * 182.69027 * 17 14 13 20 20 N 1.31515 * 120.00275 * 201.50765 * 19 17 14 21 21 Si 1.86797 * 119.99835 * 21.50229 * 19 17 14 22 22 H 1.48501 * 109.47131 * 93.04567 * 21 19 17 23 23 H 1.48502 * 109.47517 * 213.04493 * 21 19 17 24 24 H 1.48501 * 109.47629 * 333.04556 * 21 19 17 25 25 H 1.08004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00004 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46912 * 215.00258 * 3 2 1 28 28 H 1.08996 * 109.47335 * 335.00310 * 3 2 1 29 29 H 1.09002 * 109.46767 * 299.99465 * 4 3 2 30 30 H 1.08996 * 109.47531 * 59.99549 * 4 3 2 31 31 H 1.08994 * 109.47000 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47452 * 334.99768 * 5 2 1 33 33 H 1.08996 * 109.47195 * 214.99328 * 5 2 1 34 34 H 0.96991 * 120.00087 * 359.97438 * 6 5 2 35 35 H 1.08003 * 119.99928 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.90007 * 179.71878 * 9 8 7 37 37 H 1.08000 * 119.90045 * 180.28359 * 10 9 8 38 38 H 1.08003 * 119.99856 * 179.76942 * 11 10 9 39 39 H 1.08997 * 109.46903 * 55.30445 * 16 14 13 40 40 H 1.08995 * 109.47310 * 175.31498 * 16 14 13 41 41 H 1.09004 * 109.46480 * 295.30930 * 16 14 13 42 42 H 0.96995 * 120.00006 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4276 1.6838 1.4370 5 6 2.0635 -1.3051 -0.0006 6 7 2.4118 -1.6673 -1.3768 7 6 3.1197 -2.8479 -1.6321 8 6 3.4917 -3.6760 -0.5842 9 6 4.1959 -4.8387 -0.8381 10 6 4.5220 -5.1849 -2.1364 11 6 4.1553 -4.3654 -3.1876 12 6 3.4533 -3.1944 -2.9419 13 16 2.9850 -2.1474 -4.2795 14 6 3.8098 -2.9109 -5.7033 15 1 3.6146 -3.9833 -5.7042 16 6 5.3174 -2.6670 -5.6105 17 6 3.2799 -2.3028 -6.9763 18 1 2.5546 -1.5038 -6.9320 19 6 3.7211 -2.7664 -8.1975 20 7 3.6148 -2.0076 -9.2664 21 14 4.4698 -4.4723 -8.3339 22 1 3.4123 -5.4495 -8.6970 23 1 5.5217 -4.4690 -9.3821 24 1 5.0708 -4.8549 -7.0309 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0854 -0.4342 29 1 1.5169 1.7900 2.0265 30 1 3.0525 0.9034 1.8712 31 1 2.9722 2.6279 1.4370 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1992 0.5888 34 1 2.1520 -1.0892 -2.1110 35 1 3.2358 -3.4105 0.4309 36 1 4.4888 -5.4803 -0.0201 37 1 5.0681 -6.0965 -2.3295 38 1 4.4149 -4.6371 -4.2002 39 1 5.6863 -3.0329 -4.6523 40 1 5.8214 -3.1953 -6.4197 41 1 5.5184 -1.5989 -5.6934 42 1 3.9255 -2.3337 -10.1255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358657953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = 17.604731 kcal Electronic energy + Delta-G solvation = -20468.851888 eV Core-core repulsion = 17539.212196 eV Total energy + Delta-G solvation = -2929.639691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.27834 -38.14942 -36.18847 -35.31242 -33.37955 -31.82864 -31.49287 -29.86557 -27.29923 -26.65348 -24.46810 -23.71273 -23.45451 -22.28235 -19.67229 -19.15731 -18.36333 -17.53367 -17.22771 -16.51508 -16.11633 -15.87218 -15.74250 -15.13986 -15.06012 -14.83146 -14.65042 -14.47742 -14.03223 -13.96227 -13.75877 -13.52559 -13.22579 -13.00937 -12.90957 -12.74013 -12.41090 -12.38030 -11.90933 -11.79084 -11.69073 -11.62870 -11.44658 -10.98896 -10.77872 -10.65026 -10.39292 -10.18919 -8.79732 -8.43781 -7.84330 -6.43195 0.43740 0.72011 0.87976 1.13526 1.29250 1.34943 1.42773 1.88799 2.27236 2.76738 2.89004 2.94852 3.74624 3.86221 3.98094 4.25572 4.32657 4.34821 4.49826 4.50067 4.51768 4.55489 4.57341 4.61766 4.66254 4.74379 4.81358 4.93539 4.94479 5.04798 5.09064 5.13864 5.28987 5.34929 5.35801 5.44941 5.50489 5.62676 5.72796 5.85519 5.98707 6.07036 6.45117 6.54944 6.71771 7.16442 8.72136 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.004352 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.835728 B = 6431.982571 C = 7570.802027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.152 4.152 3 C -0.091 4.091 4 C -0.141 4.141 5 C 0.164 3.836 6 N -0.743 5.743 7 C 0.220 3.780 8 C -0.187 4.187 9 C -0.076 4.076 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.169 4.169 13 S -0.170 6.170 14 C 0.066 3.934 15 H 0.045 0.955 16 C -0.135 4.135 17 C -0.532 4.532 18 H 0.038 0.962 19 C 0.041 3.959 20 N -0.922 5.922 21 Si 0.925 3.075 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.234 1.234 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.396 0.604 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 -1.358 23.333 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.129 4.129 4 C -0.198 4.198 5 C 0.041 3.959 6 N -0.373 5.373 7 C 0.111 3.889 8 C -0.211 4.211 9 C -0.097 4.097 10 C -0.188 4.188 11 C -0.132 4.132 12 C -0.285 4.285 13 S 0.074 5.926 14 C -0.063 4.063 15 H 0.063 0.937 16 C -0.194 4.194 17 C -0.571 4.571 18 H 0.056 0.944 19 C -0.161 4.161 20 N -0.559 5.559 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.157 1.157 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.231 0.769 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.121 -0.241 23.262 23.290 hybrid contribution 0.707 -1.204 -1.406 1.982 sum -0.413 -1.445 21.856 21.907 Atomic orbital electron populations 1.24018 0.95031 1.02956 0.97814 1.21790 0.95669 0.95162 1.02568 1.20612 0.99710 0.93978 0.98573 1.21690 1.01806 1.01489 0.94808 1.20365 0.98845 0.93879 0.82792 1.44963 1.61568 1.22547 1.08266 1.17555 0.92470 0.87784 0.91081 1.20816 1.05809 0.96777 0.97720 1.21239 0.95831 0.95822 0.96828 1.21071 1.04354 1.00873 0.92519 1.21161 0.98436 0.93637 0.99979 1.21455 1.10278 1.01390 0.95417 1.84921 1.66552 1.40170 1.00938 1.21045 0.95164 0.97456 0.92655 0.93681 1.22273 0.95340 1.01532 1.00247 1.20439 1.26817 1.20573 0.89242 0.94416 1.25620 0.95047 1.00786 0.94679 1.70109 1.47386 1.37262 1.01154 0.86138 0.78903 0.80431 0.79794 1.19758 1.20123 1.15670 0.86882 0.87959 0.92455 0.90990 0.92006 0.92515 0.91960 0.91097 0.91142 0.76864 0.83622 0.82735 0.84391 0.87184 0.92642 0.92906 0.93304 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 13.88 67.78 0.94 -1.79 16 2 C -0.15 -2.83 4.67 -16.49 -0.08 -2.91 16 3 C -0.09 -1.62 6.10 29.85 0.18 -1.44 16 4 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 5 C 0.16 3.32 5.08 85.63 0.43 3.76 16 6 N -0.74 -20.76 5.68 -342.54 -1.94 -22.71 16 7 C 0.22 6.82 6.66 38.24 0.25 7.07 16 8 C -0.19 -4.61 9.31 22.38 0.21 -4.40 16 9 C -0.08 -1.74 10.04 22.29 0.22 -1.52 16 10 C -0.17 -4.52 10.04 22.28 0.22 -4.30 16 11 C -0.11 -3.74 8.13 22.39 0.18 -3.56 16 12 C -0.17 -6.23 6.00 22.70 0.14 -6.10 16 13 S -0.17 -7.42 19.74 -56.49 -1.12 -8.54 16 14 C 0.07 3.17 1.52 29.85 0.05 3.21 16 15 H 0.05 2.16 5.25 -2.39 -0.01 2.14 16 16 C -0.13 -5.92 8.22 71.98 0.59 -5.33 16 17 C -0.53 -30.71 8.98 25.60 0.23 -30.48 16 18 H 0.04 2.45 7.96 -2.91 -0.02 2.42 16 19 C 0.04 2.34 5.28 84.66 0.45 2.78 16 20 N -0.92 -56.20 13.96 21.45 0.30 -55.90 16 21 Si 0.92 42.39 25.98 68.60 1.78 44.17 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.23 -9.74 5.63 99.48 0.56 -9.18 16 25 H 0.11 1.63 7.99 -2.91 -0.02 1.61 16 26 H 0.10 1.69 7.99 -2.92 -0.02 1.67 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.22 7.99 -2.39 -0.02 1.20 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.30 7.80 -2.39 -0.02 1.28 16 33 H 0.07 1.30 7.95 -2.39 -0.02 1.28 16 34 H 0.40 12.45 7.01 -92.72 -0.65 11.80 16 35 H 0.15 2.73 6.74 -2.91 -0.02 2.71 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.11 4.10 5.06 -2.91 -0.01 4.08 16 39 H 0.05 2.16 6.37 -2.39 -0.02 2.15 16 40 H 0.05 2.27 5.21 -2.39 -0.01 2.26 16 41 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -65.30 347.46 3.97 -61.33 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.21 Total: 27.87 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 4.74 Total: -46.23 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.65 Total: -78.61 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.78 Total: 44.17 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.12 Total: -8.54 kcal Total: -65.30 3.97 -61.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358657953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.936 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds