Wall clock time and date at job start Tue Mar 31 2020 07:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99643 * 3 2 1 6 6 H 1.48498 * 109.47416 * 60.00058 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 C 1.53001 * 109.47238 * 64.99625 * 15 14 13 18 18 O 1.42906 * 109.46999 * 184.99936 * 17 15 14 19 19 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 20 20 C 1.50690 * 109.47563 * 174.99874 * 19 15 14 21 21 C 1.38244 * 120.00022 * 269.72678 * 20 19 15 22 22 C 1.38229 * 119.99789 * 179.76465 * 21 20 19 23 23 C 1.38242 * 120.00231 * 0.50554 * 22 21 20 24 24 C 1.38232 * 119.99520 * 359.74946 * 23 22 21 25 25 C 1.38227 * 120.00353 * 359.97438 * 24 23 22 26 26 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 28 28 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 29 29 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 30 30 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 31 31 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 33 33 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 34 34 H 1.08995 * 109.47272 * 304.99730 * 17 15 14 35 35 H 1.08997 * 109.46682 * 65.00375 * 17 15 14 36 36 H 0.96698 * 113.99909 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.46886 * 295.00118 * 19 15 14 38 38 H 1.09002 * 109.46923 * 54.99368 * 19 15 14 39 39 H 1.07998 * 119.99606 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.99957 * 180.22885 * 22 21 20 41 41 H 1.08002 * 119.99725 * 179.71985 * 23 22 21 42 42 H 1.08002 * 119.99299 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99822 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4277 -8.5659 -0.0125 16 1 3.1124 -8.4550 -0.8533 17 6 3.2216 -8.5638 1.2954 18 8 4.2285 -9.5764 1.2431 19 6 1.6670 -9.8868 -0.1452 20 6 2.6499 -11.0218 -0.2736 21 6 3.0860 -11.4205 -1.5234 22 6 3.9913 -12.4585 -1.6408 23 6 4.4526 -13.1047 -0.5092 24 6 4.0125 -12.7095 0.7402 25 6 3.1116 -11.6678 0.8580 26 1 -0.4849 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8898 29 1 2.8721 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 3.1359 -6.1343 -0.0004 32 1 0.8061 -7.4652 0.8818 33 1 0.8074 -7.4565 -0.8982 34 1 3.6921 -7.5903 1.4333 35 1 2.5485 -8.7634 2.1292 36 1 4.7720 -9.6322 2.0409 37 1 1.0483 -10.0402 0.7389 38 1 1.0328 -9.8534 -1.0311 39 1 2.7219 -10.9188 -2.4077 40 1 4.3349 -12.7676 -2.6170 41 1 5.1565 -13.9187 -0.6013 42 1 4.3726 -13.2147 1.6242 43 1 2.7674 -11.3593 1.8342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360309542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:40 Heat of formation + Delta-G solvation = -83.198675 kcal Electronic energy + Delta-G solvation = -22341.440773 eV Core-core repulsion = 18964.677047 eV Total energy + Delta-G solvation = -3376.763726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86360 -39.08505 -37.50072 -35.37789 -33.46895 -33.40862 -31.19494 -30.94801 -30.39839 -26.56115 -26.18632 -24.87999 -22.67802 -21.98985 -21.22014 -20.54604 -19.53237 -17.67089 -16.92260 -16.76589 -16.16281 -15.72303 -15.58715 -15.13791 -15.04041 -14.77549 -14.40369 -14.31371 -13.49370 -13.41304 -13.07296 -13.02186 -12.85747 -12.68083 -12.20526 -12.00214 -11.91893 -11.59768 -11.16732 -11.15636 -10.97633 -10.94879 -10.82259 -10.57894 -10.25790 -9.96297 -9.66992 -9.18570 -9.02337 -8.91296 -8.80542 -8.59287 -8.32395 -5.96368 -4.00708 1.29444 1.38144 3.25261 3.32296 3.39032 3.42206 3.49696 3.76501 3.94663 4.46975 4.47434 4.62391 4.76046 4.83593 4.90994 4.98121 5.10742 5.19552 5.27768 5.37734 5.38595 5.43655 5.46031 5.54908 5.56859 5.69600 5.83371 5.94227 5.98458 6.04257 6.22472 6.24323 6.38234 6.43181 6.58024 6.69593 6.89285 6.94979 7.38277 7.74544 7.86201 7.86458 8.07121 8.38624 8.77450 9.08191 9.62885 11.14629 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.002331 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.749145 B =12007.398626 C =12190.236398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.534 6.534 13 N -0.746 5.746 14 C 0.125 3.875 15 C -0.092 4.092 16 H 0.086 0.914 17 C 0.077 3.923 18 O -0.555 6.555 19 C -0.073 4.073 20 C -0.067 4.067 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.064 4.064 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.370 0.630 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -26.748 1.586 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.409 6.409 13 N -0.401 5.401 14 C 0.000 4.000 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.001 4.001 18 O -0.360 6.360 19 C -0.110 4.110 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.082 4.082 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.217 0.783 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.325 -26.705 0.995 27.990 hybrid contribution 1.252 1.061 0.551 1.731 sum 9.577 -25.644 1.546 27.418 Atomic orbital electron populations 1.70011 1.06047 1.26470 1.50312 1.25036 0.94839 0.99261 0.95340 0.86532 0.79989 0.83827 0.77583 1.19763 1.21013 1.21022 1.21262 0.92959 0.91014 1.51213 0.92564 1.18904 0.93190 0.89405 0.98623 1.21864 1.00714 0.91988 1.02451 1.21569 0.88653 0.85649 0.74380 1.90673 1.14479 1.87661 1.48135 1.46261 1.10022 1.05599 1.78212 1.21241 0.94004 0.82055 1.02666 1.21414 0.96982 0.94130 0.98519 0.89593 1.22208 0.90143 0.90807 0.96930 1.86766 1.49102 1.56324 1.43845 1.20546 0.95996 0.91380 1.03117 1.19603 0.97811 0.96093 0.93188 1.20985 0.98078 0.97484 0.96923 1.21017 0.98293 0.97024 0.98305 1.21035 1.00313 1.00098 0.92906 1.21014 0.98710 0.98023 0.97125 1.20733 0.96022 0.93854 0.97596 0.93006 0.95808 0.95841 0.90307 0.90256 0.76938 0.91578 0.91123 0.93442 0.93553 0.78288 0.90802 0.90595 0.86650 0.86716 0.86861 0.86812 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16 11 C 0.51 9.68 7.83 -10.98 -0.09 9.59 16 12 O -0.53 -12.56 15.98 5.55 0.09 -12.47 16 13 N -0.75 -10.09 5.23 -60.30 -0.32 -10.40 16 14 C 0.12 1.45 5.06 -4.04 -0.02 1.43 16 15 C -0.09 -0.82 2.26 -90.62 -0.20 -1.03 16 16 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 17 C 0.08 0.62 6.23 37.16 0.23 0.85 16 18 O -0.56 -4.31 9.04 -35.23 -0.32 -4.63 16 19 C -0.07 -0.62 4.84 -27.89 -0.14 -0.75 16 20 C -0.07 -0.62 4.26 -104.63 -0.45 -1.06 16 21 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 22 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.13 -1.09 10.05 -39.59 -0.40 -1.48 16 25 C -0.06 -0.55 6.62 -39.59 -0.26 -0.81 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.40 4.29 7.66 -40.82 -0.31 3.98 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.38 7.07 -51.93 -0.37 0.02 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.37 1.64 9.12 45.56 0.42 2.06 16 37 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.11 0.85 7.80 -52.48 -0.41 0.44 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -35.19 356.97 -8.76 -43.95 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.12 Total: 1.68 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -3.19 Total: -13.41 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.42 Total: -37.18 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.23 Total: -17.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.19 -8.76 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360309542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.245 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds