Wall clock time and date at job start Tue Mar 31 2020 07:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99643 * 3 2 1 6 6 H 1.48498 * 109.47416 * 60.00058 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09008 * 109.47304 * 304.99667 * 15 14 13 17 17 C 1.53001 * 109.47238 * 64.99625 * 15 14 13 18 18 O 1.42906 * 109.46999 * 184.99936 * 17 15 14 19 19 C 1.53003 * 109.47530 * 184.99929 * 15 14 13 20 20 C 1.50690 * 109.47563 * 174.99874 * 19 15 14 21 21 C 1.38244 * 120.00022 * 269.72678 * 20 19 15 22 22 C 1.38229 * 119.99789 * 179.76465 * 21 20 19 23 23 C 1.38242 * 120.00231 * 0.50554 * 22 21 20 24 24 C 1.38232 * 119.99520 * 359.74946 * 23 22 21 25 25 C 1.38227 * 120.00353 * 359.97438 * 24 23 22 26 26 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 28 28 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 29 29 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 30 30 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 31 31 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 33 33 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 34 34 H 1.08995 * 109.47272 * 304.99730 * 17 15 14 35 35 H 1.08997 * 109.46682 * 65.00375 * 17 15 14 36 36 H 0.96698 * 113.99909 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.46886 * 295.00118 * 19 15 14 38 38 H 1.09002 * 109.46923 * 54.99368 * 19 15 14 39 39 H 1.07998 * 119.99606 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.99957 * 180.22885 * 22 21 20 41 41 H 1.08002 * 119.99725 * 179.71985 * 23 22 21 42 42 H 1.08002 * 119.99299 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99822 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4277 -8.5659 -0.0125 16 1 3.1124 -8.4550 -0.8533 17 6 3.2216 -8.5638 1.2954 18 8 4.2285 -9.5764 1.2431 19 6 1.6670 -9.8868 -0.1452 20 6 2.6499 -11.0218 -0.2736 21 6 3.0860 -11.4205 -1.5234 22 6 3.9913 -12.4585 -1.6408 23 6 4.4526 -13.1047 -0.5092 24 6 4.0125 -12.7095 0.7402 25 6 3.1116 -11.6678 0.8580 26 1 -0.4849 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8898 29 1 2.8721 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 3.1359 -6.1343 -0.0004 32 1 0.8061 -7.4652 0.8818 33 1 0.8074 -7.4565 -0.8982 34 1 3.6921 -7.5903 1.4333 35 1 2.5485 -8.7634 2.1292 36 1 4.7720 -9.6322 2.0409 37 1 1.0483 -10.0402 0.7389 38 1 1.0328 -9.8534 -1.0311 39 1 2.7219 -10.9188 -2.4077 40 1 4.3349 -12.7676 -2.6170 41 1 5.1565 -13.9187 -0.6013 42 1 4.3726 -13.2147 1.6242 43 1 2.7674 -11.3593 1.8342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360309542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:39 Heat of formation + Delta-G solvation = -107.351662 kcal Electronic energy + Delta-G solvation = -22342.488125 eV Core-core repulsion = 18964.677047 eV Total energy + Delta-G solvation = -3377.811078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87799 -40.18307 -38.27438 -36.29834 -35.54290 -34.42796 -33.00258 -31.57551 -31.41121 -28.14071 -26.87342 -26.29380 -23.58775 -23.30402 -22.24486 -21.51738 -20.81438 -18.84815 -18.27015 -17.57601 -17.31447 -16.94940 -16.82020 -16.46172 -16.30150 -15.82019 -15.44975 -15.28931 -14.77122 -14.33101 -14.19955 -14.09231 -13.95487 -13.55991 -13.53689 -13.24005 -13.20077 -12.83568 -12.75422 -12.43671 -12.32921 -11.92103 -11.80897 -11.67355 -11.61674 -11.49888 -11.28147 -10.85350 -10.73313 -10.57811 -10.06841 -9.56329 -9.24730 -8.18041 -6.31940 0.64365 0.73936 1.42343 1.43705 1.56970 1.72457 2.25266 2.45025 3.08342 3.14990 3.29037 3.73067 3.94171 4.07172 4.11119 4.18714 4.32183 4.37269 4.44142 4.49367 4.53108 4.56539 4.59237 4.62946 4.76985 4.81994 4.86178 4.90247 5.03694 5.09706 5.22648 5.33792 5.36328 5.46346 5.52956 5.63989 5.74921 5.80210 5.86119 5.92875 6.18036 6.32810 6.59627 6.87020 6.97065 7.34708 7.38586 8.94834 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.002331 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.749145 B =12007.398626 C =12190.236398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.511 3.489 12 O -0.589 6.589 13 N -0.719 5.719 14 C 0.126 3.874 15 C -0.078 4.078 16 H 0.082 0.918 17 C 0.080 3.920 18 O -0.564 6.564 19 C -0.071 4.071 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.068 4.068 26 H 0.263 0.737 27 H -0.018 1.018 28 H -0.017 1.017 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.414 0.586 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.386 0.614 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 -27.446 2.113 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.373 5.373 14 C 0.002 3.998 15 C -0.097 4.097 16 H 0.100 0.900 17 C 0.003 3.997 18 O -0.372 6.372 19 C -0.108 4.108 20 C -0.077 4.077 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.086 4.086 26 H 0.071 0.929 27 H 0.000 1.000 28 H 0.001 0.999 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.252 0.748 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.235 0.765 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.138 -27.455 1.531 29.668 hybrid contribution 0.408 1.168 0.391 1.298 sum 11.546 -26.287 1.921 28.775 Atomic orbital electron populations 1.70186 1.08294 1.27729 1.51596 1.26154 0.95751 1.03992 0.94718 0.85264 0.79293 0.78085 0.77535 1.17608 1.20690 1.20611 1.21751 0.94003 0.91618 1.50549 0.90596 1.18699 0.93750 0.92512 0.94716 1.21638 0.99314 0.90201 1.04838 1.21308 0.87786 0.86767 0.74176 1.90661 1.16691 1.88416 1.51101 1.45948 1.10893 1.04766 1.75691 1.21334 0.94578 0.81808 1.02096 1.21250 0.96254 0.92996 0.99213 0.89989 1.22118 0.90328 0.91077 0.96224 1.86726 1.49245 1.56062 1.45130 1.20525 0.95944 0.90901 1.03476 1.19697 0.98130 0.96447 0.93434 1.21172 0.98653 0.98068 0.97308 1.21258 0.98358 0.97072 0.99225 1.21326 1.00545 1.00489 0.92920 1.21293 0.98430 0.97913 0.97807 1.20899 0.95987 0.93869 0.97849 0.92872 0.99989 0.99879 0.87678 0.87880 0.74840 0.91936 0.92055 0.93262 0.92919 0.76476 0.90151 0.90632 0.86387 0.85590 0.85245 0.84998 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.29 21.45 0.28 -59.41 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.28 4.26 29.85 0.13 2.41 16 10 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 11 C 0.51 19.39 7.83 87.66 0.69 20.08 16 12 O -0.59 -28.69 15.98 -3.04 -0.05 -28.74 16 13 N -0.72 -18.44 5.23 -463.07 -2.42 -20.86 16 14 C 0.13 2.82 5.06 86.38 0.44 3.26 16 15 C -0.08 -1.28 2.26 -10.79 -0.02 -1.31 16 16 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 17 C 0.08 1.10 6.23 71.98 0.45 1.55 16 18 O -0.56 -7.36 9.04 -148.98 -1.35 -8.71 16 19 C -0.07 -1.12 4.84 29.85 0.14 -0.97 16 20 C -0.08 -1.32 4.26 -19.87 -0.08 -1.41 16 21 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 22 C -0.14 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.14 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.07 -1.05 6.62 22.27 0.15 -0.90 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 28 H -0.02 -1.08 8.10 -2.38 -0.02 -1.10 16 29 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.41 7.88 7.66 -92.71 -0.71 7.17 16 32 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 0.66 7.07 -2.39 -0.02 0.64 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.39 2.37 9.12 -74.06 -0.68 1.70 16 37 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.12 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.12 1.57 7.80 -2.91 -0.02 1.55 16 Total: -1.00 -78.66 356.97 1.74 -76.92 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.38 Total: 14.91 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.63 Total: -20.47 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.14 Total: -80.27 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.40 Total: -37.45 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.66 1.74 -76.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360309542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.434 kcal (2) G-P(sol) polarization free energy of solvation -78.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds