Wall clock time and date at job start Tue Mar 31 2020 07:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48501 * 109.46712 * 269.99947 * 3 2 1 5 5 H 1.48491 * 109.47281 * 30.00025 * 3 2 1 6 6 H 1.48504 * 109.46856 * 150.00177 * 3 2 1 7 7 C 1.37875 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47500 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47100 * 54.99323 * 15 14 13 17 17 C 1.53007 * 109.46806 * 294.99611 * 15 14 13 18 18 O 1.42901 * 109.46707 * 64.99949 * 17 15 14 19 19 C 1.52997 * 109.47519 * 175.00001 * 15 14 13 20 20 C 1.50695 * 109.47526 * 184.99653 * 19 15 14 21 21 C 1.38233 * 120.00323 * 269.72706 * 20 19 15 22 22 C 1.38231 * 120.00162 * 179.76549 * 21 20 19 23 23 C 1.38234 * 120.00091 * 0.50210 * 22 21 20 24 24 C 1.38242 * 119.99865 * 359.75116 * 23 22 21 25 25 C 1.38230 * 119.99933 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46737 * 59.99926 * 9 7 2 28 28 H 1.09002 * 109.46890 * 300.00037 * 9 7 2 29 29 H 1.08998 * 109.46837 * 60.00023 * 10 9 7 30 30 H 1.09002 * 109.46926 * 299.99827 * 10 9 7 31 31 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 33 33 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 34 34 H 1.08995 * 109.46945 * 184.99955 * 17 15 14 35 35 H 1.09000 * 109.47277 * 305.00011 * 17 15 14 36 36 H 0.96701 * 113.99516 * 179.97438 * 18 17 15 37 37 H 1.09007 * 109.47118 * 304.99691 * 19 15 14 38 38 H 1.09002 * 109.47058 * 64.99320 * 19 15 14 39 39 H 1.08004 * 119.99643 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.00288 * 180.22840 * 22 21 20 41 41 H 1.08002 * 120.00226 * 179.72790 * 23 22 21 42 42 H 1.07996 * 119.99889 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00526 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 6 1.4331 -7.4031 0.0036 15 6 2.4273 -8.5660 0.0023 16 1 3.1147 -8.4574 0.8412 17 6 3.2171 -8.5603 -1.3082 18 8 4.0175 -7.3785 -1.3767 19 6 1.6670 -9.8872 0.1336 20 6 2.6502 -11.0227 0.2557 21 6 3.1036 -11.6695 -0.8787 22 6 4.0091 -12.7079 -0.7670 23 6 4.4535 -13.1063 0.4798 24 6 3.9961 -12.4630 1.6147 25 6 3.0949 -11.4209 1.5026 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 3.1356 -6.1344 -0.0015 32 1 0.8102 -7.4592 0.8964 33 1 0.8026 -7.4625 -0.8836 34 1 3.8615 -9.4384 -1.3478 35 1 2.5246 -8.5794 -2.1498 36 1 4.5468 -7.3082 -2.1829 37 1 1.0355 -9.8563 1.0217 38 1 1.0455 -10.0381 -0.7490 39 1 2.7528 -11.3613 -1.8526 40 1 4.3662 -13.2108 -1.6536 41 1 5.1577 -13.9205 0.5674 42 1 4.3430 -12.7746 2.5888 43 1 2.7372 -10.9185 2.3892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360309543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:43 Heat of formation + Delta-G solvation = -113.200159 kcal Electronic energy + Delta-G solvation = -22317.436716 eV Core-core repulsion = 18939.372028 eV Total energy + Delta-G solvation = -3378.064688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85060 -40.23322 -38.44060 -36.09697 -35.53056 -34.63990 -32.99049 -31.76106 -31.34901 -28.15894 -26.92603 -26.33472 -23.58620 -23.37481 -22.31471 -21.59144 -20.68381 -18.78930 -18.22477 -17.78963 -17.37154 -16.98292 -16.79141 -16.39673 -16.21658 -15.87202 -15.75691 -15.11178 -14.63858 -14.39789 -14.23488 -14.19142 -14.08842 -13.80560 -13.52682 -13.21647 -13.09592 -12.88173 -12.79268 -12.45759 -12.44337 -11.91110 -11.88775 -11.74297 -11.62193 -11.56433 -11.29290 -10.87683 -10.64605 -10.56143 -9.92945 -9.76318 -9.55964 -8.17023 -6.31243 0.46707 0.53680 1.42243 1.45609 1.56638 1.78284 2.33111 2.47279 2.91931 3.15435 3.30358 3.62089 3.90417 4.04589 4.13390 4.21502 4.22644 4.26505 4.34611 4.48068 4.51595 4.56161 4.56693 4.61695 4.68434 4.73912 4.80672 4.85169 4.98450 5.10775 5.16506 5.21604 5.25367 5.49524 5.61264 5.64526 5.64649 5.67408 5.74979 5.86636 6.16304 6.19221 6.72472 6.87040 6.98067 7.38527 7.46375 8.95777 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039026 B = 0.002389 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.300657 B =11718.236833 C =11916.534844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.506 3.494 12 O -0.597 6.597 13 N -0.707 5.707 14 C 0.124 3.876 15 C -0.081 4.081 16 H 0.083 0.917 17 C 0.080 3.920 18 O -0.589 6.589 19 C -0.069 4.069 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.263 0.737 27 H -0.018 1.018 28 H -0.019 1.019 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.398 0.602 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 -29.470 -1.654 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.158 4.158 11 C 0.294 3.706 12 O -0.478 6.478 13 N -0.362 5.362 14 C 0.000 4.000 15 C -0.100 4.100 16 H 0.101 0.899 17 C 0.003 3.997 18 O -0.398 6.398 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.000 1.000 28 H 0.000 1.000 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.259 0.741 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.248 0.752 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.613 -29.288 -1.086 31.525 hybrid contribution 0.365 0.810 -0.468 1.004 sum 11.979 -28.478 -1.554 30.933 Atomic orbital electron populations 1.70188 1.08322 1.27802 1.51488 1.26175 0.95779 1.04028 0.94630 0.85284 0.78614 0.77548 0.78563 1.19600 1.21095 1.17950 1.21718 0.93971 0.91629 1.50778 0.90686 1.18679 0.93669 0.92475 0.94609 1.21597 0.99269 0.90456 1.04467 1.21314 0.87747 0.87001 0.74504 1.90630 1.16662 1.88577 1.51900 1.46030 1.11439 1.04311 1.74430 1.21367 0.94596 0.82811 1.01213 1.21283 0.96414 0.93155 0.99166 0.89868 1.22336 0.93482 0.87619 0.96307 1.86231 1.62352 1.43597 1.47636 1.20486 0.96031 0.89628 1.04496 1.19893 0.98218 0.97044 0.93662 1.21288 0.98026 0.96489 0.98509 1.21437 0.97464 0.97236 0.98356 1.21461 1.00467 1.00521 0.92708 1.21420 0.97446 0.96199 0.99598 1.21298 0.98223 0.97782 0.97487 0.92846 0.99989 1.00023 0.88271 0.88102 0.74142 0.92680 0.92775 0.91684 0.93203 0.75172 0.89591 0.89447 0.84867 0.84403 0.84556 0.84795 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.80 13.29 21.45 0.28 -60.51 16 2 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 3 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.52 4.26 29.85 0.13 2.65 16 10 C -0.12 -5.12 5.64 29.85 0.17 -4.95 16 11 C 0.51 21.28 7.83 87.65 0.69 21.96 16 12 O -0.60 -31.05 15.98 -3.04 -0.05 -31.10 16 13 N -0.71 -21.64 5.00 -463.05 -2.31 -23.96 16 14 C 0.12 3.20 5.06 86.38 0.44 3.63 16 15 C -0.08 -1.41 2.28 -10.79 -0.02 -1.44 16 16 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 17 C 0.08 1.20 6.16 71.98 0.44 1.65 16 18 O -0.59 -9.85 10.89 -148.98 -1.62 -11.47 16 19 C -0.07 -0.96 4.84 29.85 0.14 -0.82 16 20 C -0.09 -1.24 4.71 -19.87 -0.09 -1.34 16 21 C -0.13 -1.57 7.89 22.27 0.18 -1.39 16 22 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16 23 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 24 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 25 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 28 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 29 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.42 10.99 6.30 -92.71 -0.58 10.41 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 34 H 0.07 0.82 5.94 -2.39 -0.01 0.80 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.40 3.58 9.12 -74.06 -0.68 2.90 16 37 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 38 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 39 H 0.13 1.26 8.01 -2.91 -0.02 1.23 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.13 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -80.96 357.96 1.72 -79.24 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.26 Total: 18.08 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 3.65 Total: -17.54 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.03 Total: -84.47 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.67 Total: -42.57 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.96 1.72 -79.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360309543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.957 kcal (2) G-P(sol) polarization free energy of solvation -80.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds