Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.79359 * 2 1 4 4 C 1.53251 * 109.63391 * 239.50224 * 2 1 3 5 5 N 1.46468 * 109.85938 * 178.29380 * 4 2 1 6 6 C 1.46898 * 110.99475 * 197.76535 * 5 4 2 7 7 C 1.50705 * 109.46853 * 170.00095 * 6 5 4 8 8 C 1.38635 * 119.74745 * 269.72398 * 7 6 5 9 9 C 1.37627 * 120.24501 * 179.76186 * 8 7 6 10 10 C 1.40715 * 119.74480 * 0.53444 * 9 8 7 11 11 C 1.41389 * 120.24519 * 179.74569 * 10 9 8 12 12 H 1.08004 * 119.99883 * 24.37530 * 11 10 9 13 13 C 1.39944 * 120.00067 * 204.37734 * 11 10 9 14 14 N 1.30822 * 120.00254 * 17.85473 * 13 11 10 15 15 Si 1.86806 * 119.99879 * 197.86165 * 13 11 10 16 16 H 1.48496 * 109.47118 * 59.99947 * 15 13 11 17 17 H 1.48501 * 109.47163 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46940 * 299.99415 * 15 13 11 19 19 C 1.40723 * 119.50947 * 359.72095 * 10 9 8 20 20 C 1.37611 * 119.74799 * 0.02562 * 19 10 9 21 21 C 1.46470 * 112.55918 * 72.66185 * 5 4 2 22 22 C 1.53250 * 109.85527 * 287.34039 * 21 5 4 23 23 H 1.09007 * 109.63069 * 302.29665 * 22 21 5 24 24 C 1.53000 * 109.63116 * 181.90873 * 22 21 5 25 25 S 1.81898 * 108.50759 * 62.00445 * 22 21 5 26 26 H 1.08993 * 109.47496 * 180.49678 * 1 2 3 27 27 H 1.09003 * 109.47447 * 300.49938 * 1 2 3 28 28 H 1.09001 * 109.47142 * 60.49293 * 1 2 3 29 29 H 1.08998 * 109.40102 * 58.17283 * 4 2 1 30 30 H 1.09000 * 109.40554 * 298.41639 * 4 2 1 31 31 H 1.09002 * 109.47180 * 289.99799 * 6 5 4 32 32 H 1.08998 * 109.47332 * 50.00344 * 6 5 4 33 33 H 1.07991 * 119.87968 * 0.02562 * 8 7 6 34 34 H 1.07994 * 120.12845 * 180.23550 * 9 8 7 35 35 H 0.97004 * 120.00468 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.12623 * 179.97438 * 19 10 9 37 37 H 1.08001 * 119.88041 * 179.97438 * 20 19 10 38 38 H 1.09000 * 109.41105 * 47.45450 * 21 5 4 39 39 H 1.08991 * 109.40453 * 167.22449 * 21 5 4 40 40 H 1.09006 * 109.47143 * 59.99620 * 24 22 21 41 41 H 1.09000 * 109.47202 * 179.97438 * 24 22 21 42 42 H 1.09001 * 109.46814 * 299.99887 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0449 -0.7325 -1.2437 5 7 3.5090 -0.7002 -1.2697 6 6 4.0184 -1.0045 -2.6135 7 6 5.4983 -0.7242 -2.6650 8 6 5.9476 0.5337 -3.0361 9 6 7.2966 0.8023 -3.0819 10 6 8.2211 -0.2090 -2.7612 11 6 9.6095 0.0538 -2.8100 12 1 9.9718 1.0654 -2.7006 13 6 10.5143 -0.9968 -3.0000 14 7 10.0965 -2.1422 -3.4743 15 14 12.3186 -0.7637 -2.5762 16 1 12.4498 -0.4336 -1.1343 17 1 13.0611 -2.0166 -2.8662 18 1 12.8792 0.3443 -3.3907 19 6 7.7535 -1.4836 -2.3911 20 6 6.4000 -1.7281 -2.3470 21 6 4.1084 -1.5852 -0.2683 22 6 3.9230 -0.9888 1.1312 23 1 4.3706 0.0044 1.1683 24 6 4.5921 -1.8931 2.1682 25 16 2.1410 -0.8693 1.4764 26 1 -0.3634 -1.0275 0.0089 27 1 -0.3634 0.5216 0.8855 28 1 -0.3633 0.5062 -0.8944 29 1 1.6559 -0.2454 -2.1378 30 1 1.7058 -1.7682 -1.2204 31 1 3.8396 -2.0555 -2.8405 32 1 3.5050 -0.3820 -3.3463 33 1 5.2364 1.3069 -3.2861 34 1 7.6445 1.7839 -3.3676 35 1 10.7235 -2.8705 -3.6057 36 1 8.4543 -2.2672 -2.1433 37 1 6.0388 -2.7057 -2.0636 38 1 3.6260 -2.5617 -0.3126 39 1 5.1724 -1.6984 -0.4756 40 1 5.6565 -1.9737 1.9472 41 1 4.4590 -1.4664 3.1623 42 1 4.1379 -2.8834 2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398990698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = 8.110223 kcal Electronic energy + Delta-G solvation = -21027.569293 eV Core-core repulsion = 18097.517889 eV Total energy + Delta-G solvation = -2930.051404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -38.67844 -37.08030 -34.18329 -33.89172 -32.54939 -30.13326 -29.33243 -27.15014 -26.67995 -24.78880 -22.78278 -21.42381 -21.13402 -20.58909 -19.75696 -17.33075 -16.85905 -15.68708 -15.31420 -15.05123 -14.95735 -14.57146 -14.15012 -13.72710 -13.55487 -13.43412 -12.91053 -12.61169 -12.53895 -12.19756 -12.02520 -11.88118 -11.82634 -11.62385 -11.47698 -11.26097 -11.09360 -11.00318 -10.91294 -10.60350 -10.41558 -10.36458 -9.68027 -9.50165 -9.39803 -9.15212 -8.09748 -7.58802 -7.46465 -7.33231 -6.79859 -4.38211 1.83615 2.62134 2.70246 3.03365 3.04945 3.06784 3.15336 3.90100 4.05514 4.62028 4.74121 4.89189 5.05302 5.14082 5.22197 5.32534 5.41023 5.54907 5.60155 5.66714 5.69981 5.76442 5.78955 5.84324 5.92931 6.02022 6.09626 6.16133 6.20178 6.23971 6.32241 6.37348 6.90904 7.04224 7.20022 7.32535 7.35201 7.38301 7.58131 7.84827 8.02006 8.09655 8.27112 8.60386 8.86498 8.94405 10.14543 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.003743 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.617207 B = 7477.901068 C = 8025.641796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.042 4.042 3 H 0.094 0.906 4 C 0.059 3.941 5 N -0.546 5.546 6 C 0.126 3.874 7 C -0.212 4.212 8 C -0.068 4.068 9 C -0.228 4.228 10 C 0.114 3.886 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.793 5.793 15 Si 0.907 3.093 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.165 4.165 20 C -0.096 4.096 21 C 0.056 3.944 22 C -0.038 4.038 23 H 0.095 0.905 24 C -0.132 4.132 25 S -0.288 6.288 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 -0.049 5.811 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.172 4.172 3 H 0.113 0.887 4 C -0.071 4.071 5 N -0.270 5.270 6 C 0.000 4.000 7 C -0.213 4.213 8 C -0.086 4.086 9 C -0.248 4.248 10 C 0.111 3.889 11 C -0.492 4.492 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.418 5.418 15 Si 0.731 3.269 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.185 4.185 20 C -0.115 4.115 21 C -0.073 4.073 22 C -0.167 4.167 23 H 0.114 0.886 24 C -0.191 4.191 25 S -0.061 6.061 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.495 -0.190 6.731 14.194 hybrid contribution 1.288 -0.281 -1.112 1.725 sum -11.206 -0.471 5.619 12.545 Atomic orbital electron populations 1.21583 0.92128 1.02772 1.02475 1.23172 0.98275 1.01722 0.93997 0.88746 1.22274 0.88884 0.98893 0.97017 1.61238 1.04694 1.54591 1.06514 1.20689 0.94154 0.97615 0.87523 1.18813 0.91852 0.95415 1.15240 1.20309 0.94782 0.94672 0.98879 1.20964 0.92750 0.99481 1.11612 1.17611 0.92869 0.91235 0.87161 1.19583 0.91044 0.94727 1.43895 0.90499 1.25905 1.01501 0.94512 0.92176 1.69816 1.37523 1.03736 1.30694 0.86386 0.81598 0.78590 0.80281 1.18794 1.20335 1.18991 1.21276 0.93446 0.98660 1.05087 1.20501 0.93927 0.96175 1.00861 1.22385 1.02635 0.92945 0.89342 1.23213 0.92001 1.03602 0.97847 0.88634 1.21595 1.00853 0.99046 0.97622 1.86694 1.09725 1.77809 1.31890 0.91871 0.91778 0.91214 0.90219 0.94094 0.95676 0.91570 0.89567 0.89133 0.90814 0.86535 0.89886 0.94494 0.87701 0.90620 0.91889 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.23 37.16 0.34 -0.90 16 2 C -0.04 -0.52 3.34 -26.60 -0.09 -0.61 16 3 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.06 0.77 4.72 -3.93 -0.02 0.75 16 5 N -0.55 -8.62 4.40 -236.48 -1.04 -9.66 16 6 C 0.13 2.15 5.12 -4.97 -0.03 2.13 16 7 C -0.21 -4.41 4.91 -104.33 -0.51 -4.92 16 8 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 9 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 10 C 0.11 2.98 5.57 -106.82 -0.60 2.38 16 11 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 12 H 0.08 1.94 7.91 -52.48 -0.42 1.53 16 13 C 0.08 1.90 5.14 -17.34 -0.09 1.82 16 14 N -0.79 -20.16 10.95 55.55 0.61 -19.55 16 15 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 16 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 C -0.17 -4.16 8.70 -38.87 -0.34 -4.50 16 20 C -0.10 -2.13 7.73 -39.66 -0.31 -2.44 16 21 C 0.06 0.88 4.55 -3.93 -0.02 0.86 16 22 C -0.04 -0.54 3.33 -26.60 -0.09 -0.63 16 23 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 24 C -0.13 -1.64 9.24 37.16 0.34 -1.30 16 25 S -0.29 -3.93 21.15 -107.50 -2.27 -6.20 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 30 H 0.04 0.54 7.91 -51.93 -0.41 0.13 16 31 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.12 3.05 6.15 -52.49 -0.32 2.72 16 37 H 0.08 1.69 7.74 -52.49 -0.41 1.28 16 38 H 0.04 0.57 7.92 -51.93 -0.41 0.16 16 39 H 0.11 1.86 4.94 -51.93 -0.26 1.60 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -26.28 343.24 -11.88 -38.16 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.81 Total: 6.32 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.50 Total: -27.62 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: -0.43 Total: -29.21 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.27 Total: -6.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.28 -11.88 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.267 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds