Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.79359 * 2 1 4 4 C 1.53251 * 109.63391 * 239.50224 * 2 1 3 5 5 N 1.46468 * 109.85938 * 178.29380 * 4 2 1 6 6 C 1.46898 * 110.99475 * 197.76535 * 5 4 2 7 7 C 1.50705 * 109.46853 * 170.00095 * 6 5 4 8 8 C 1.38635 * 119.74745 * 269.72398 * 7 6 5 9 9 C 1.37627 * 120.24501 * 179.76186 * 8 7 6 10 10 C 1.40715 * 119.74480 * 0.53444 * 9 8 7 11 11 C 1.41389 * 120.24519 * 179.74569 * 10 9 8 12 12 H 1.08004 * 119.99883 * 24.37530 * 11 10 9 13 13 C 1.39944 * 120.00067 * 204.37734 * 11 10 9 14 14 N 1.30822 * 120.00254 * 17.85473 * 13 11 10 15 15 Si 1.86806 * 119.99879 * 197.86165 * 13 11 10 16 16 H 1.48496 * 109.47118 * 59.99947 * 15 13 11 17 17 H 1.48501 * 109.47163 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46940 * 299.99415 * 15 13 11 19 19 C 1.40723 * 119.50947 * 359.72095 * 10 9 8 20 20 C 1.37611 * 119.74799 * 0.02562 * 19 10 9 21 21 C 1.46470 * 112.55918 * 72.66185 * 5 4 2 22 22 C 1.53250 * 109.85527 * 287.34039 * 21 5 4 23 23 H 1.09007 * 109.63069 * 302.29665 * 22 21 5 24 24 C 1.53000 * 109.63116 * 181.90873 * 22 21 5 25 25 S 1.81898 * 108.50759 * 62.00445 * 22 21 5 26 26 H 1.08993 * 109.47496 * 180.49678 * 1 2 3 27 27 H 1.09003 * 109.47447 * 300.49938 * 1 2 3 28 28 H 1.09001 * 109.47142 * 60.49293 * 1 2 3 29 29 H 1.08998 * 109.40102 * 58.17283 * 4 2 1 30 30 H 1.09000 * 109.40554 * 298.41639 * 4 2 1 31 31 H 1.09002 * 109.47180 * 289.99799 * 6 5 4 32 32 H 1.08998 * 109.47332 * 50.00344 * 6 5 4 33 33 H 1.07991 * 119.87968 * 0.02562 * 8 7 6 34 34 H 1.07994 * 120.12845 * 180.23550 * 9 8 7 35 35 H 0.97004 * 120.00468 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.12623 * 179.97438 * 19 10 9 37 37 H 1.08001 * 119.88041 * 179.97438 * 20 19 10 38 38 H 1.09000 * 109.41105 * 47.45450 * 21 5 4 39 39 H 1.08991 * 109.40453 * 167.22449 * 21 5 4 40 40 H 1.09006 * 109.47143 * 59.99620 * 24 22 21 41 41 H 1.09000 * 109.47202 * 179.97438 * 24 22 21 42 42 H 1.09001 * 109.46814 * 299.99887 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0449 -0.7325 -1.2437 5 7 3.5090 -0.7002 -1.2697 6 6 4.0184 -1.0045 -2.6135 7 6 5.4983 -0.7242 -2.6650 8 6 5.9476 0.5337 -3.0361 9 6 7.2966 0.8023 -3.0819 10 6 8.2211 -0.2090 -2.7612 11 6 9.6095 0.0538 -2.8100 12 1 9.9718 1.0654 -2.7006 13 6 10.5143 -0.9968 -3.0000 14 7 10.0965 -2.1422 -3.4743 15 14 12.3186 -0.7637 -2.5762 16 1 12.4498 -0.4336 -1.1343 17 1 13.0611 -2.0166 -2.8662 18 1 12.8792 0.3443 -3.3907 19 6 7.7535 -1.4836 -2.3911 20 6 6.4000 -1.7281 -2.3470 21 6 4.1084 -1.5852 -0.2683 22 6 3.9230 -0.9888 1.1312 23 1 4.3706 0.0044 1.1683 24 6 4.5921 -1.8931 2.1682 25 16 2.1410 -0.8693 1.4764 26 1 -0.3634 -1.0275 0.0089 27 1 -0.3634 0.5216 0.8855 28 1 -0.3633 0.5062 -0.8944 29 1 1.6559 -0.2454 -2.1378 30 1 1.7058 -1.7682 -1.2204 31 1 3.8396 -2.0555 -2.8405 32 1 3.5050 -0.3820 -3.3463 33 1 5.2364 1.3069 -3.2861 34 1 7.6445 1.7839 -3.3676 35 1 10.7235 -2.8705 -3.6057 36 1 8.4543 -2.2672 -2.1433 37 1 6.0388 -2.7057 -2.0636 38 1 3.6260 -2.5617 -0.3126 39 1 5.1724 -1.6984 -0.4756 40 1 5.6565 -1.9737 1.9472 41 1 4.4590 -1.4664 3.1623 42 1 4.1379 -2.8834 2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398990698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -3.615240 kcal Electronic energy + Delta-G solvation = -21028.077747 eV Core-core repulsion = 18097.517889 eV Total energy + Delta-G solvation = -2930.559858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.13773 -38.65179 -35.72757 -35.11068 -33.86896 -31.75520 -31.15635 -28.68027 -27.76821 -26.24249 -24.17093 -23.03712 -22.18782 -22.05185 -21.41272 -19.21454 -17.95554 -17.22539 -16.75567 -16.38900 -16.05785 -15.96711 -15.71666 -15.21417 -15.00169 -14.71150 -14.22397 -13.98454 -13.79246 -13.59094 -13.35972 -13.26752 -13.17299 -12.88431 -12.79110 -12.67493 -12.55886 -12.31592 -12.22266 -12.12217 -12.01376 -11.50100 -11.35731 -11.24586 -10.98664 -10.61928 -9.41396 -9.27085 -9.16301 -8.67298 -8.63793 -6.32698 0.78727 0.94367 1.16801 1.37394 1.47870 1.52327 1.56340 2.20286 2.62720 2.98189 3.70841 3.78159 3.81258 4.06491 4.07185 4.14890 4.19713 4.32922 4.36828 4.52148 4.55015 4.61287 4.65639 4.72915 4.74097 4.80212 4.85582 4.90990 4.96363 5.03249 5.05040 5.15008 5.16798 5.23872 5.38071 5.48477 5.71501 5.95226 6.01913 6.11004 6.19568 6.29987 6.41046 6.71262 6.95471 7.05189 8.32837 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.003743 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.617207 B = 7477.901068 C = 8025.641796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.038 4.038 3 H 0.087 0.913 4 C 0.060 3.940 5 N -0.556 5.556 6 C 0.131 3.869 7 C -0.196 4.196 8 C -0.071 4.071 9 C -0.246 4.246 10 C 0.082 3.918 11 C -0.504 4.504 12 H 0.072 0.928 13 C 0.038 3.962 14 N -0.825 5.825 15 Si 0.979 3.021 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.260 1.260 19 C -0.188 4.188 20 C -0.094 4.094 21 C 0.061 3.939 22 C -0.037 4.037 23 H 0.077 0.923 24 C -0.128 4.128 25 S -0.295 6.295 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.288 0.712 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 0.038 6.008 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 H 0.105 0.895 4 C -0.069 4.069 5 N -0.280 5.280 6 C 0.005 3.995 7 C -0.198 4.198 8 C -0.089 4.089 9 C -0.265 4.265 10 C 0.079 3.921 11 C -0.534 4.534 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.451 5.451 15 Si 0.800 3.200 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.184 1.184 19 C -0.208 4.208 20 C -0.112 4.112 21 C -0.068 4.068 22 C -0.166 4.166 23 H 0.096 0.904 24 C -0.187 4.187 25 S -0.069 6.069 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.374 -0.100 6.932 15.958 hybrid contribution 1.659 -0.291 -1.168 2.049 sum -12.715 -0.391 5.764 13.966 Atomic orbital electron populations 1.21574 0.89771 1.03291 1.03700 1.23264 1.00043 1.00767 0.92644 0.89500 1.22353 0.86780 0.99469 0.98250 1.61156 1.06622 1.54645 1.05557 1.20622 0.91446 0.98509 0.88905 1.19234 0.94100 0.94341 1.12100 1.20616 0.94295 0.95838 0.98201 1.21157 0.93821 0.99352 1.12185 1.17934 0.93605 0.92217 0.88297 1.19815 0.91967 0.95223 1.46364 0.90964 1.26705 1.05785 0.93871 0.91366 1.69867 1.39236 1.04549 1.31409 0.85304 0.75939 0.78923 0.79868 1.18595 1.19108 1.18439 1.21229 0.94532 0.98200 1.06819 1.20701 0.93064 0.97448 1.00022 1.22293 1.01111 0.93331 0.90113 1.23129 0.92942 1.02857 0.97645 0.90413 1.21574 1.00479 0.99054 0.97561 1.86732 1.08754 1.78060 1.33315 0.91653 0.91436 0.89121 0.88278 0.93788 0.94985 0.89656 0.86922 0.88955 0.90179 0.88370 0.88187 0.94138 0.90163 0.91017 0.90956 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.23 71.98 0.66 -1.29 16 2 C -0.04 -0.83 3.34 30.68 0.10 -0.72 16 3 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.06 1.38 4.72 86.47 0.41 1.79 16 5 N -0.56 -16.25 4.40 -902.09 -3.97 -20.22 16 6 C 0.13 4.14 5.12 85.56 0.44 4.58 16 7 C -0.20 -7.96 4.91 -19.67 -0.10 -8.05 16 8 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 9 C -0.25 -12.14 9.80 22.73 0.22 -11.92 16 10 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 11 C -0.50 -27.56 9.05 23.46 0.21 -27.35 16 12 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 13 C 0.04 1.91 5.14 85.26 0.44 2.35 16 14 N -0.82 -43.28 10.95 21.83 0.24 -43.05 16 15 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 17 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.19 -9.83 8.70 22.73 0.20 -9.63 16 20 C -0.09 -4.18 7.73 22.22 0.17 -4.01 16 21 C 0.06 1.83 4.55 86.47 0.39 2.23 16 22 C -0.04 -1.01 3.33 30.68 0.10 -0.91 16 23 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 24 C -0.13 -3.08 9.24 71.98 0.67 -2.41 16 25 S -0.30 -7.52 21.15 -56.49 -1.20 -8.71 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.92 7.76 -2.39 -0.02 1.90 16 30 H 0.04 1.01 7.91 -2.39 -0.02 0.99 16 31 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.09 2.40 7.77 -2.39 -0.02 2.39 16 33 H 0.11 4.21 8.06 -2.92 -0.02 4.19 16 34 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 36 H 0.10 5.40 6.15 -2.91 -0.02 5.38 16 37 H 0.10 4.05 7.74 -2.91 -0.02 4.02 16 38 H 0.04 1.18 7.92 -2.39 -0.02 1.16 16 39 H 0.08 2.82 4.94 -2.39 -0.01 2.81 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -57.97 343.24 2.10 -55.87 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.98 Total: 29.48 kcal Atomic # 6 Polarization: -57.88 SS G_CDS: 4.02 Total: -53.86 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -3.73 Total: -63.27 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.20 Total: -8.71 kcal Total: -57.97 2.10 -55.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.257 kcal (2) G-P(sol) polarization free energy of solvation -57.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds